View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11720_low_26 (Length: 222)
Name: NF11720_low_26
Description: NF11720
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11720_low_26 |
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Alignment Details
Target: chr4 (Bit Score: 200; Significance: 1e-109; HSPs: 7)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 1 - 204
Target Start/End: Original strand, 8042224 - 8042427
Alignment:
| Q |
1 |
acttccattccctaaatcttcaataacgcggccttcccaccaccgttgtttccggaaagcctccaccttgtcgccgatcttcacttcccaatcatcgctc |
100 |
Q |
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| T |
8042224 |
acttccattccctaaatcttcaataacgcggccttcccaccaccgttgtttccggaaagcctccaccttgtcgccgatcttcacttcccaatcatcgctc |
8042323 |
T |
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| Q |
101 |
tctggcgtaggtactggtcggagctgatgaagaccgacagttgttggcttcacgtccacgtcatcgtattcgaccagtaatttgtcggaggagacccacc |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8042324 |
tctggcgtaggtactggtcggagctgatgaagaccgacagttgttggcttcacgtccacgtcatcgtattcgaccagtaatttgtcggaggagacccact |
8042423 |
T |
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| Q |
201 |
tgac |
204 |
Q |
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|||| |
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| T |
8042424 |
tgac |
8042427 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 131; E-Value: 4e-68
Query Start/End: Original strand, 1 - 203
Target Start/End: Complemental strand, 8410407 - 8410205
Alignment:
| Q |
1 |
acttccattccctaaatcttcaataacgcggccttcccaccaccgttgtttccggaaagcctccaccttgtcgccgatcttcacttcccaatcatcgctc |
100 |
Q |
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||||||||||||||||||||| |||| |||||||||||||||| ||||||||||| |||||||| ||||||||||||||||||||||||||||| || |
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| T |
8410407 |
acttccattccctaaatcttcgctaacacggccttcccaccacctgtgtttccggaacgcctccactttgtcgccgatcttcacttcccaatcatcaatc |
8410308 |
T |
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| Q |
101 |
tctggcgtaggtactggtcggagctgatgaagaccgacagttgttggcttcacgtccacgtcatcgtattcgaccagtaatttgtcggaggagacccacc |
200 |
Q |
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| T |
8410307 |
tccagcgtgggcactggtcggagctgatgaagaccgacaactgttggcttcacgtcctcgtcatcgaattcgaccagtaatttgtcggaggagaaccacc |
8410208 |
T |
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| Q |
201 |
tga |
203 |
Q |
| |
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||| |
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| T |
8410207 |
tga |
8410205 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 2 - 203
Target Start/End: Original strand, 9139848 - 9140049
Alignment:
| Q |
2 |
cttccattccctaaatcttcaataacgcggccttcccaccaccgttgtttccggaaagcctccaccttgtcgccgatcttcacttcccaatcatcgctct |
101 |
Q |
| |
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|||||||||||||||||| | |||||||||||||||||||||| ||||| ||||| |||||||||||||||||||||||||||||||||| ||||||| |
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| T |
9139848 |
cttccattccctaaatctgcgctaacgcggccttcccaccaccggtgttttcggaatgcctccaccttgtcgccgatcttcacttcccaataatcgctca |
9139947 |
T |
|
| Q |
102 |
ctggcgtaggtactggtcggagctgatgaagaccgacagttgttggcttcacgtccacgtcatcgtattcgaccagtaatttgtcggaggagacccacct |
201 |
Q |
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| T |
9139948 |
ccggcgtgggcactggtcggagctgatgaagaccgacaactgttggcttcacatccatgtcatcgtattggaccagtaatatgtcggaggagaaccacct |
9140047 |
T |
|
| Q |
202 |
ga |
203 |
Q |
| |
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|| |
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| T |
9140048 |
ga |
9140049 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 32 - 204
Target Start/End: Original strand, 8036776 - 8036948
Alignment:
| Q |
32 |
ccttcccaccaccgttgtttccggaaagcctccaccttgtcgccgatcttcacttcccaatcatcgctctctggcgtaggtactggtcggagctgatgaa |
131 |
Q |
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||||||||||||| ||||||||||| |||||||| ||||| | |||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
8036776 |
ccttcccaccacctgtgtttccggaacgcctccactttgtccctgatcttcacttcccaatcatcgctctctggtgtaggtactggtcggagctgatgaa |
8036875 |
T |
|
| Q |
132 |
gaccgacagttgttggcttcacgtccacgtcatcgtattcgaccagtaatttgtcggaggagacccacctgac |
204 |
Q |
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| T |
8036876 |
gaccaacatctgttggcttcacgtccatgtcatcgtattcgaccagtaatttgtcggaggaaacccacctgac |
8036948 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 149 - 204
Target Start/End: Complemental strand, 8416063 - 8416008
Alignment:
| Q |
149 |
ttcacgtccacgtcatcgtattcgaccagtaatttgtcggaggagacccacctgac |
204 |
Q |
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|||||||||| ||||||||||||||||||||||||||| || || ||||||||||| |
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| T |
8416063 |
ttcacgtccatgtcatcgtattcgaccagtaatttgtcagacgaaacccacctgac |
8416008 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 35 - 133
Target Start/End: Original strand, 43145537 - 43145635
Alignment:
| Q |
35 |
tcccaccaccgttgtttccggaaagcctccaccttgtcgccgatcttcacttcccaatcatcgctctctggcgtaggtactggtcggagctgatgaaga |
133 |
Q |
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| T |
43145537 |
tcccaccaccgctgtttccagaaggcttctaccttgtcgccggtcctcaaatgccaatcatcgctctccggtgtaggcactggtcggagttggtgaaga |
43145635 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 30 - 93
Target Start/End: Original strand, 8360123 - 8360186
Alignment:
| Q |
30 |
ggccttcccaccaccgttgtttccggaaagcctccaccttgtcgccgatcttcacttcccaatc |
93 |
Q |
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|||| |||| |||||||||||||| || ||||||||||||||||| ||||| ||||||||||| |
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| T |
8360123 |
ggccctcccgccaccgttgtttcccaaatgcctccaccttgtcgccaatctttacttcccaatc |
8360186 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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