View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11720_low_27 (Length: 221)
Name: NF11720_low_27
Description: NF11720
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11720_low_27 |
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| [»] chr1 (2 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 172; Significance: 1e-92; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 172; E-Value: 1e-92
Query Start/End: Original strand, 10 - 221
Target Start/End: Original strand, 49655281 - 49655492
Alignment:
| Q |
10 |
gagattttctatcaaaaccattcatttagagtttccaatggtgtgttttcaagaccagacaccaacaaaggttgtcttttaccaacccaaaacctcactt |
109 |
Q |
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| T |
49655281 |
gagattttctatcaaaaccattcatttagagtttccaatgttgttttttcaagatcaaacaccaacaaaggttgtctttcaccaacccaaaacctcactt |
49655380 |
T |
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| Q |
110 |
ttcccattaacattttctactttgcacctaaccaaagtgaagtgaaattgttcttcggatgcgattcaacaaagctacccagagagctgcaaaggaacac |
209 |
Q |
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| T |
49655381 |
ttccccataacatgttctatcttgcacctaaccaaagtgaagtgaaattgttcttcggatgcgattcaacaaagctacccagagagctgcaaaggaacac |
49655480 |
T |
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| Q |
210 |
aattggttgctc |
221 |
Q |
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| T |
49655481 |
aattggttgctc |
49655492 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 172; E-Value: 1e-92
Query Start/End: Original strand, 10 - 221
Target Start/End: Original strand, 49712803 - 49713014
Alignment:
| Q |
10 |
gagattttctatcaaaaccattcatttagagtttccaatggtgtgttttcaagaccagacaccaacaaaggttgtcttttaccaacccaaaacctcactt |
109 |
Q |
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| T |
49712803 |
gagattttctatcaaaaccattcatttagagtttccaatgttgttttttcaagatcaaacaccaacaaaggttgtctttcaccaacccaaaacctcactt |
49712902 |
T |
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| Q |
110 |
ttcccattaacattttctactttgcacctaaccaaagtgaagtgaaattgttcttcggatgcgattcaacaaagctacccagagagctgcaaaggaacac |
209 |
Q |
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| T |
49712903 |
ttccccataacatgttctatcttgcacctaaccaaagtgaagtgaaattgttcttcggatgcgattcaacaaagctacccagagagctgcaaaggaacac |
49713002 |
T |
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| Q |
210 |
aattggttgctc |
221 |
Q |
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| T |
49713003 |
aattggttgctc |
49713014 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 60; Significance: 9e-26; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 60; E-Value: 9e-26
Query Start/End: Original strand, 53 - 220
Target Start/End: Original strand, 28448617 - 28448784
Alignment:
| Q |
53 |
tgttttcaagaccagacaccaacaaaggttgtcttttaccaacccaaaacctcacttttcccattaacattttctactttgcacctaaccaaagtgaagt |
152 |
Q |
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| T |
28448617 |
tgttttgaagatcaaacaccaacaaaggttgtctttctcctgttcagaacctcactattcccatggacatgttctatattgctccgaatcaaagtgaaat |
28448716 |
T |
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| Q |
153 |
gaaattgttcttcggatgcgattcaacaaagctacccagagagctgcaaaggaacacaattggttgct |
220 |
Q |
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| T |
28448717 |
gatattgtttttgggatgcgactcaacaaagctactcagagtgctgcaaaggaacacaatcggttgct |
28448784 |
T |
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