View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11720_low_3 (Length: 689)
Name: NF11720_low_3
Description: NF11720
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11720_low_3 |
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Alignment Details
Target: chr2 (Bit Score: 615; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 615; E-Value: 0
Query Start/End: Original strand, 1 - 679
Target Start/End: Complemental strand, 36457820 - 36457142
Alignment:
| Q |
1 |
cggtctgctacctattttcgatgacatccatttccaactaagagattgaacacattaggaatactgtccataaaaattatattatttctagcaatccata |
100 |
Q |
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||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36457820 |
cggtctgctacctattttcgacgacattcatttccaactaagagattgaacacattaggaatactgtccataaaaattatattatttctagcaatccata |
36457721 |
T |
|
| Q |
101 |
gagatcaaacaaccgctcaccacaacaacagaccgagcgagccttttgtttttcactccccataaagacacattatgctgcagcagatgaaccacaggat |
200 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36457720 |
gagaccaaacaaccgctcaccacaacaacagaccgagcgagccttttgtttttcactccccataaagacacattatgctgcagcagatgaaccacaggat |
36457621 |
T |
|
| Q |
201 |
ctacatgagttacaattgatactccaatccactgataaaactccaaacaaaccactaaacttcactgacagccgaagaatagatgttcctcgctctaatt |
300 |
Q |
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||||||||||||||||||| |||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36457620 |
ctacatgagttacaattgacactccaatccactgataaaactccaaccaaaccacaaaacttcactgacagccgaagaatagatgttcctcgctctaatt |
36457521 |
T |
|
| Q |
301 |
attgtcagaacagaacacaaaggatgaattatgatccgcaggcataatgtttcttgtgattaaattcaacattgcctgcagcctcttctgcaggcgcttc |
400 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||| |
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| T |
36457520 |
attgtcagaacagaacacaaaggatgaattatgatccgcaggcataatgtttcttgtgattaaattcaacattgactgcagcctcttctgcaggagcttc |
36457421 |
T |
|
| Q |
401 |
aacccgacaacctggactttcgacccatcgccaaattaggtgatatgctgctctaaactcgtcgcctgcatataaatctgacagcattctacatcagctt |
500 |
Q |
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|| ||| |||||||||||||||| |||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36457420 |
cacacgaaaacctggactttcgacacatcgccaaattaggtgatatgctactttaaactcgtcgcctgcatataaatctgacagcattctacatcagctt |
36457321 |
T |
|
| Q |
501 |
ttgcagctgaatctctgcgtagattctagtttccagacccagtatcaggctggtcctgccttggagacgctgacagcagcagcgtattcaaattctgcac |
600 |
Q |
| |
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||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
36457320 |
ttgcagctgaatctctgtgtagactctagtttccagacccagtatcaggctggtcctgccttggagacgctgacagcagcagcgtattcaaattctgcac |
36457221 |
T |
|
| Q |
601 |
cagttaggcctcccaatcaatagcattacgcttccaagatagcctctatgaccacccattattaatccactcccctatg |
679 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36457220 |
cagttaggcctcccaatcaatagcattacgcttccaagatagcctctatgaccacccattattaatccactcccctatg |
36457142 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 116; Significance: 1e-58; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 116; E-Value: 1e-58
Query Start/End: Original strand, 149 - 352
Target Start/End: Original strand, 11629469 - 11629672
Alignment:
| Q |
149 |
tttttcactccccataaagacacattatgctgcagcagatgaaccacaggatctacatgagttacaattgatactccaatccactgataaaactccaaac |
248 |
Q |
| |
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|||||||| ||||| |||||||||||||| ||||||| ||| |||| | ||||||||| ||||||||| || ||||||||||||||||||| || || | |
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| T |
11629469 |
tttttcacaccccacaaagacacattatggtgcagcaaatgtaccataagatctacataagttacaatagacactccaatccactgataaacctttaacc |
11629568 |
T |
|
| Q |
249 |
aaaccactaaacttcactgacagccgaagaatagatgttcctcgctctaattattgtcagaacagaacacaaaggatgaattatgatccgcaggcataat |
348 |
Q |
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||||||| | |||||| ||| |||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||| |||||| |||| |
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| T |
11629569 |
aaaccacaacacttcattgatagccgaagaatagatgtttctcgctctaattattgtcggaacagaacacaaaggatgaattatgatctgcaggcctaat |
11629668 |
T |
|
| Q |
349 |
gttt |
352 |
Q |
| |
|
|||| |
|
|
| T |
11629669 |
gttt |
11629672 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 51 - 130
Target Start/End: Original strand, 11628377 - 11628456
Alignment:
| Q |
51 |
cacattaggaatactgtccataaaaattatattatttctagcaatccatagagatcaaacaaccgctcaccacaacaaca |
130 |
Q |
| |
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|||||||| |||| ||||||||||||||||||||||||||||||| ||||||| ||||||||| ||| | ||||||||| |
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| T |
11628377 |
cacattagaaatattgtccataaaaattatattatttctagcaatatatagagaccaaacaacctctcccaacaacaaca |
11628456 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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