View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11720_low_5 (Length: 527)
Name: NF11720_low_5
Description: NF11720
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11720_low_5 |
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Alignment Details
Target: chr4 (Bit Score: 424; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 424; E-Value: 0
Query Start/End: Original strand, 57 - 504
Target Start/End: Original strand, 54212913 - 54213360
Alignment:
| Q |
57 |
agaagacaagcaaacaaaacagtgtcaattatatccttaaaatgaaaatatcacttgtcataaaataatggaataagtcaattattcgtgtgtacttcaa |
156 |
Q |
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|||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
54212913 |
agaagacaagtaaacaaaacagtgtcaattatatccttaaaatgaaaatatcaattgtcataaaataatggaataagtcaattattcgtgtgtacttcaa |
54213012 |
T |
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| Q |
157 |
accaaacctttttcctactatgctcccaaaataaagaaatcacacacaaagcaattaacgcatacagtttatgtaactgattaaatatgttagttcttga |
256 |
Q |
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| T |
54213013 |
accaaacctttttcctactatgctcccaaaataaagaaatctcacacaaagcaattaacgcatacagtttatgtaactgattaaatatgttagttcttga |
54213112 |
T |
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| Q |
257 |
aattccaaagaagaaaagagattttttattcaactaaacaagaaatgccgaatcaagaaggcagggatgaaaagagtaacagcaaaagatataaaaacat |
356 |
Q |
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| T |
54213113 |
aattccaaagaagaaaagagattttttattcaactaaacaagaaatgccgaatcaagaaggcagggatgaaaagagtaacagcaaaagatgtaaaaacat |
54213212 |
T |
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| Q |
357 |
gaacatttatattttcaaggttttcatcatctcatttactatttgtagttaccagacagtgaaggcacaatagcaatggaattcatgaataataaagtga |
456 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
54213213 |
gaacatttatattttcaaggttttcatcatctcatttactatttgtagttaccagacagtgaaggtacaatagcaatggaattcatgaataataaagtga |
54213312 |
T |
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| Q |
457 |
caaagccattttatcttatcatgcaaataaatttataaaggaaaattg |
504 |
Q |
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| T |
54213313 |
caaagccattttatcttattatgcaaataaatttataaaggaaaattg |
54213360 |
T |
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