View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11720_low_6 (Length: 490)

Name: NF11720_low_6
Description: NF11720
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11720_low_6
NF11720_low_6
[»] chr4 (15 HSPs)
chr4 (9-473)||(47968678-47969135)
chr4 (13-135)||(41279624-41279747)
chr4 (14-135)||(54976223-54976345)
chr4 (15-133)||(6884561-6884680)
chr4 (14-135)||(55874038-55874160)
chr4 (15-135)||(37564259-37564380)
chr4 (15-135)||(29191491-29191612)
chr4 (49-135)||(22443262-22443348)
chr4 (50-135)||(29119383-29119470)
chr4 (17-135)||(38024052-38024171)
chr4 (49-135)||(49283618-49283705)
chr4 (49-135)||(1921716-1921803)
chr4 (49-135)||(42739094-42739180)
chr4 (66-135)||(8067423-8067492)
chr4 (66-135)||(47498136-47498205)
[»] chr7 (7 HSPs)
chr7 (14-135)||(42027443-42027565)
chr7 (15-135)||(29008149-29008270)
chr7 (50-135)||(12313377-12313463)
chr7 (9-135)||(44118574-44118701)
chr7 (49-135)||(33119210-33119296)
chr7 (66-135)||(1828489-1828558)
chr7 (9-99)||(47645967-47646058)
[»] chr6 (3 HSPs)
chr6 (14-135)||(20219518-20219640)
chr6 (14-135)||(22113543-22113665)
chr6 (49-135)||(11455693-11455780)
[»] chr1 (13 HSPs)
chr1 (14-135)||(44565549-44565671)
chr1 (15-135)||(42887150-42887271)
chr1 (14-135)||(2326301-2326423)
chr1 (15-135)||(261198-261319)
chr1 (28-135)||(17307066-17307174)
chr1 (15-135)||(46833690-46833811)
chr1 (15-135)||(49622367-49622486)
chr1 (15-135)||(51621337-51621457)
chr1 (49-135)||(15545037-15545124)
chr1 (49-135)||(21373441-21373527)
chr1 (15-135)||(29743934-29744055)
chr1 (49-135)||(33506239-33506326)
chr1 (49-135)||(37661435-37661521)
[»] chr8 (8 HSPs)
chr8 (15-133)||(6610253-6610372)
chr8 (49-135)||(40978120-40978206)
chr8 (15-135)||(43634151-43634272)
chr8 (49-135)||(2956516-2956603)
chr8 (52-135)||(21594708-21594792)
chr8 (49-135)||(36557617-36557704)
chr8 (49-135)||(43048459-43048545)
chr8 (66-135)||(27424047-27424116)
[»] scaffold0735 (1 HSPs)
scaffold0735 (15-135)||(103-224)
[»] chr5 (8 HSPs)
chr5 (15-135)||(35384657-35384778)
chr5 (15-135)||(16617882-16618003)
chr5 (15-135)||(30404243-30404364)
chr5 (55-135)||(18672894-18672975)
chr5 (49-135)||(10329235-10329322)
chr5 (49-135)||(2956109-2956195)
chr5 (49-135)||(37276511-37276598)
chr5 (66-135)||(1751895-1751964)
[»] chr2 (8 HSPs)
chr2 (15-135)||(35734064-35734185)
chr2 (15-135)||(7758715-7758835)
chr2 (15-135)||(28809207-28809328)
chr2 (15-135)||(10356152-10356273)
chr2 (49-135)||(34209879-34209966)
chr2 (49-135)||(43589342-43589429)
chr2 (49-135)||(16256724-16256811)
chr2 (54-135)||(16255910-16255992)
[»] scaffold1251 (1 HSPs)
scaffold1251 (49-135)||(117-204)
[»] chr3 (1 HSPs)
chr3 (49-135)||(46484985-46485071)


Alignment Details
Target: chr4 (Bit Score: 334; Significance: 0; HSPs: 15)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 334; E-Value: 0
Query Start/End: Original strand, 9 - 473
Target Start/End: Original strand, 47968678 - 47969135
Alignment:
Q  9 aaaggatgacattggtatgttacaaaaaagaggataatgtgcaatatgttgaaaacatt-aaatttttaataaggatgattttatcatttaaaaataaat 107  Q
    ||||||||||||||  |||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||    
T  47968678 aaaggatgacattgtaatgttacaaaaaagaggataatgtgcaatatgttaaaaacatttaaatttttaataaggatgattttatcatttaaaaataaat 47968777  T
Q  108 acgaagataattatctcaatgtaattaattgagtgtgcctataatgaaatttacaaatgatatctataaacaaattagtt-atgactcatcattgtaata 206  Q
    ||||||||||||||           |||||||| |||| |||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||    
T  47968778 acgaagataattat-----------taattgagcgtgcgtataatgaaatttacaaatgatatttataaacaaattagtttatgactcatcattgtaata 47968866  T
Q  207 gatggattaatttattctgaatttaaaa-tgttataaataatttaattattattctttgttgatttacaagaaaattgtgagagatcaaattgattgttt 305  Q
    |||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||    
T  47968867 gatggattaatttattctcaatttaaaaatgttataaataatttaattattattctttgttgatttataagaaaattgtgagagatcaaattgatcgttt 47968966  T
Q  306 tgctnnnnnnnttgaagccaattgaacatttttatttatggaacaaaa-aatgaaattgtgttgttgaaaatttggcatttgatgtgagccacaagcatg 404  Q
    ||||       ||||||||||| ||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  47968967 tgctaaaaaagttgaagccaatagaacatttttatttatggaacaaaaaaatgaaattgtggtgttgaaaatttggcatttgatgtgagccacaagcatg 47969066  T
Q  405 aaactcctccgtggctggctacctctcaagacaatagaacatcaataccatcatgcctttgtctttcct 473  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  47969067 aaactcctccgtggctggctacctctcaagacaatagaacatcaataccatcatgcctttgtctttcct 47969135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 13 - 135
Target Start/End: Original strand, 41279624 - 41279747
Alignment:
Q  13 gatgacattggtatgttacaaaaaagaggataatgtgcaatatgttgaaaaca-ttaaatttttaataaggatgattttatcatttaaaaataaatacga 111  Q
    ||||||||||| ||||||||||||||||| ||||  |||||||||||||| || |||||||||||||||||| |||||| ||||||||||||||||| ||    
T  41279624 gatgacattggcatgttacaaaaaagaggttaataagcaatatgttgaaagcacttaaatttttaataaggacgattttgtcatttaaaaataaatatga 41279723  T
Q  112 agataattatctcaatgtaattaa 135  Q
     |||||| || |||||||||||||    
T  41279724 ggataataatgtcaatgtaattaa 41279747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 14 - 135
Target Start/End: Original strand, 54976223 - 54976345
Alignment:
Q  14 atgacattggtatgttacaaaaaagaggataatgtgcaatatgttgaaaaca-ttaaatttttaataaggatgattttatcatttaaaaataaatacgaa 112  Q
    |||||||||| ||||||||||||||| | ||||  ||||||||||||||||| |||||||||||||||||| | |||| ||||||||||||||| | ||     
T  54976223 atgacattggcatgttacaaaaaagatggtaataagcaatatgttgaaaacacttaaatttttaataaggacggttttgtcatttaaaaataaacatgag 54976322  T
Q  113 gataattatctcaatgtaattaa 135  Q
    ||||||||| |||||||||||||    
T  54976323 gataattatgtcaatgtaattaa 54976345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 64; E-Value: 9e-28
Query Start/End: Original strand, 15 - 133
Target Start/End: Complemental strand, 6884680 - 6884561
Alignment:
Q  15 tgacattggtatgttacaaaaaagaggataatgtgcaatatgttgaaaaca-ttaaatttttaataaggatgattttatcatttaaaaataaatacgaag 113  Q
    ||||||||| ||||||||||||||| | ||||  ||||||||||||||||| |||||||||||||||||| | |||| ||||||||||||||| | || |    
T  6884680 tgacattggcatgttacaaaaaagatggtaataagcaatatgttgaaaacacttaaatttttaataaggacggttttgtcatttaaaaataaacatgagg 6884581  T
Q  114 ataattatctcaatgtaatt 133  Q
    |||||||| |||||||||||    
T  6884580 ataattatgtcaatgtaatt 6884561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 14 - 135
Target Start/End: Original strand, 55874038 - 55874160
Alignment:
Q  14 atgacattggtatgttacaaaaaagaggataatgtgcaatatgttgaaaaca-ttaaatttttaataaggatgattttatcatttaaaaataaatacgaa 112  Q
    |||||||||  |||||| |||||||||| ||||  ||||||||||||||||| ||||||||||||||| ||||||||| || ||||||||||||||  |     
T  55874038 atgacattgacatgttataaaaaagagggtaataagcaatatgttgaaaacacttaaatttttaataatgatgattttgtcttttaaaaataaatataag 55874137  T
Q  113 gataattatctcaatgtaattaa 135  Q
    ||||||||| |||||||||||||    
T  55874138 gataattatgtcaatgtaattaa 55874160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 15 - 135
Target Start/End: Original strand, 37564259 - 37564380
Alignment:
Q  15 tgacattggtatgttacaaaaaagaggataatgtgcaatatgttgaaaaca-ttaaatttttaataaggatgattttatcatttaaaaataaatacgaag 113  Q
    ||||||||| ||||||||||||||| | ||||  ||||||||||||||||| ||||||||||||||||||   |||| ||||||||||||||| | || |    
T  37564259 tgacattggcatgttacaaaaaagatggtaataagcaatatgttgaaaacacttaaatttttaataaggacagttttgtcatttaaaaataaacatgagg 37564358  T
Q  114 ataattatctcaatgtaattaa 135  Q
    |||||||| ||||| |||||||    
T  37564359 ataattatgtcaatctaattaa 37564380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 15 - 135
Target Start/End: Original strand, 29191491 - 29191612
Alignment:
Q  15 tgacattggtatgttacaaaaaagaggataatgtgcaatatgttgaaaaca-ttaaatttttaataaggatgattttatcatttaaaaataaatacgaag 113  Q
    ||||||||| ||||||||||||||| | ||||  | ||||||||||||||| |||||||||||||||||| |  ||| ||||||||||||||| | || |    
T  29191491 tgacattggcatgttacaaaaaagatggtaataagtaatatgttgaaaacacttaaatttttaataaggacggatttgtcatttaaaaataaacatgatg 29191590  T
Q  114 ataattatctcaatgtaattaa 135  Q
    |||||||| ||||||| |||||    
T  29191591 ataattatgtcaatgtgattaa 29191612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 49 - 135
Target Start/End: Complemental strand, 22443348 - 22443262
Alignment:
Q  49 gcaatatgttgaaaacattaaatttttaataaggatgattttatcatttaaaaataaatacgaagataattatctcaatgtaattaa 135  Q
    ||||||| ||||||||| ||||||||||||||||| |||||| | ||||||||||||||| || ||||||||| |||| ||||||||    
T  22443348 gcaatatattgaaaacactaaatttttaataaggacgattttgttatttaaaaataaatatgaggataattatgtcaacgtaattaa 22443262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 50 - 135
Target Start/End: Original strand, 29119383 - 29119470
Alignment:
Q  50 caatatgttgaaaacatt--aaatttttaataaggatgattttatcatttaaaaataaatacgaagataattatctcaatgtaattaa 135  Q
    |||||| ||||||||| |  ||||||||||||||||||||||| ||||||||||||||||| || ||||||||| | |||||||||||    
T  29119383 caatatattgaaaacacttaaaatttttaataaggatgattttgtcatttaaaaataaatatgaggataattatgtgaatgtaattaa 29119470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 17 - 135
Target Start/End: Complemental strand, 38024171 - 38024052
Alignment:
Q  17 acattggtatgttacaaaaaagaggataatgtgcaatatgttgaaaaca-ttaaatttttaataaggatgattttatcatttaaaaataaatacgaagat 115  Q
    ||||||| ||||||||||||| | | ||||   ||||| |||||||||| |||||||||||||||| | | |||| ||||||||||||||| | || |||    
T  38024171 acattggcatgttacaaaaaatatggtaataaacaatacgttgaaaacacttaaatttttaataagaacggttttgtcatttaaaaataaacatgaggat 38024072  T
Q  116 aattatctcaatgtaattaa 135  Q
    |||||| |||||||||||||    
T  38024071 aattatgtcaatgtaattaa 38024052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 49 - 135
Target Start/End: Complemental strand, 49283705 - 49283618
Alignment:
Q  49 gcaatatgttgaaaaca-ttaaatttttaataaggatgattttatcatttaaaaataaatacgaagataattatctcaatgtaattaa 135  Q
    ||||||| ||||||||| |||||| ||||||||| ||||||||  |||||||||||||||| || ||||||||| |||||||||||||    
T  49283705 gcaatatattgaaaacacttaaatatttaataagaatgattttgacatttaaaaataaatatgaggataattatgtcaatgtaattaa 49283618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 49 - 135
Target Start/End: Original strand, 1921716 - 1921803
Alignment:
Q  49 gcaatatgttgaaaaca-ttaaatttttaataaggatgattttatcatttaaaaataaatacgaagataattatctcaatgtaattaa 135  Q
    ||||||| ||||||||| |||||||||||||||||| |||||  | ||||||||||||||| || ||||||||| |||| ||||||||    
T  1921716 gcaatatattgaaaacacttaaatttttaataaggacgatttcgttatttaaaaataaatatgaggataattatgtcaacgtaattaa 1921803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 49 - 135
Target Start/End: Complemental strand, 42739180 - 42739094
Alignment:
Q  49 gcaatatgttgaaaacattaaatttttaataaggatgattttatcatttaaaaataaatacgaagataattatctcaatgtaattaa 135  Q
    ||||||| |||||||||   ||||||||||||||| |||||| |||||||||||| |||| || ||||||||| ||||| |||||||    
T  42739180 gcaatatattgaaaacacctaatttttaataaggacgattttgtcatttaaaaatgaatatgaggataattatgtcaatataattaa 42739094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 66 - 135
Target Start/End: Original strand, 8067423 - 8067492
Alignment:
Q  66 ttaaatttttaataaggatgattttatcatttaaaaataaatacgaagataattatctcaatgtaattaa 135  Q
    ||||||||||||||||||  ||||| ||||||||| ||||||| || ||||||||| || || |||||||    
T  8067423 ttaaatttttaataaggacaattttgtcatttaaacataaatatgaggataattatgtctatataattaa 8067492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 66 - 135
Target Start/End: Original strand, 47498136 - 47498205
Alignment:
Q  66 ttaaatttttaataaggatgattttatcatttaaaaataaatacgaagataattatctcaatgtaattaa 135  Q
    |||||||||||||||||| || |||   |||| |||||||||| || ||||||||| ||||| |||||||    
T  47498136 ttaaatttttaataaggacgacttttctattttaaaataaatatgaggataattatgtcaatataattaa 47498205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 71; Significance: 6e-32; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 71; E-Value: 6e-32
Query Start/End: Original strand, 14 - 135
Target Start/End: Complemental strand, 42027565 - 42027443
Alignment:
Q  14 atgacattggtatgttacaaaaaagaggataatgtgcaatatgttgaaaaca-ttaaatttttaataaggatgattttatcatttaaaaataaatacgaa 112  Q
    |||||||||| ||||||||||||||| ||||||  |||||||||||||| || ||||||||||||||| || |||||| ||||||||||||||||| |||    
T  42027565 atgacattggcatgttacaaaaaagatgataataagcaatatgttgaaagcacttaaatttttaataatgacgattttgtcatttaaaaataaatatgaa 42027466  T
Q  113 gataattatctcaatgtaattaa 135  Q
     |||||||| |||||||||||||    
T  42027465 aataattatgtcaatgtaattaa 42027443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 15 - 135
Target Start/End: Complemental strand, 29008270 - 29008149
Alignment:
Q  15 tgacattggtatgttacaaaaaagaggataatgtgcaatatgttgaaaaca-ttaaatttttaataaggatgattttatcatttaaaaataaatacgaag 113  Q
    ||||||||| ||||||||||||||| | ||||  | ||||||||||||||| |||||||||||||||||| |  ||||||||||||||||||| | || |    
T  29008270 tgacattggcatgttacaaaaaagatggtaataagtaatatgttgaaaacacttaaatttttaataaggacggatttatcatttaaaaataaacatgagg 29008171  T
Q  114 ataattatctcaatgtaattaa 135  Q
    |||||||| |||||||||||||    
T  29008170 ataattatgtcaatgtaattaa 29008149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 50 - 135
Target Start/End: Complemental strand, 12313463 - 12313377
Alignment:
Q  50 caatatgttgaaaaca-ttaaatttttaataaggatgattttatcatttaaaaataaatacgaagataattatctcaatgtaattaa 135  Q
    |||||| ||||||||| ||||||||||||||||||||||||| |||||||||||| |||  || ||||||||| ||||| |||||||    
T  12313463 caatatattgaaaacacttaaatttttaataaggatgattttgtcatttaaaaatgaatgtgaggataattatgtcaatataattaa 12313377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 9 - 135
Target Start/End: Complemental strand, 44118701 - 44118574
Alignment:
Q  9 aaaggatgacattggtatgttacaaaaaagaggataatgtgcaatatgttgaaaaca-ttaaatttttaataaggatgattttatcatttaaaaataaat 107  Q
    ||||||||| || || ||||||  ||||| ||| ||||  ||||||| ||||||||| |||||||||||||||| |  ||||| |||||||||||| |||    
T  44118701 aaaggatgatataggcatgttaataaaaaaagggtaataagcaatatattgaaaacacttaaatttttaataagaacaattttgtcatttaaaaatgaat 44118602  T
Q  108 acgaagataattatctcaatgtaattaa 135  Q
    | || ||||||||| ||||| |||||||    
T  44118601 atgaggataattatgtcaatataattaa 44118574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 49 - 135
Target Start/End: Original strand, 33119210 - 33119296
Alignment:
Q  49 gcaatatgttgaaaacattaaatttttaataaggatgattttatcatttaaaaataaatacgaagataattatctcaatgtaattaa 135  Q
    ||||||| ||||||   ||||||||||||||||||  ||||| |||||||||||| |||| || ||||||||| ||||| |||||||    
T  33119210 gcaatatattgaaacacttaaatttttaataaggacaattttgtcatttaaaaatgaatatgaggataattatgtcaatataattaa 33119296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 66 - 135
Target Start/End: Original strand, 1828489 - 1828558
Alignment:
Q  66 ttaaatttttaataaggatgattttatcatttaaaaataaatacgaagataattatctcaatgtaattaa 135  Q
    ||||||||| |||||||| |||||| |||||||||||| |||| || ||||||||| ||||| |||||||    
T  1828489 ttaaattttaaataaggacgattttgtcatttaaaaatgaatatgaggataattatgtcaatataattaa 1828558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 9 - 99
Target Start/End: Original strand, 47645967 - 47646058
Alignment:
Q  9 aaaggatgacattggtatgttacaaaaaagaggataatgtgcaatatgttgaaaaca-ttaaatttttaataaggatgattttatcatttaa 99  Q
    ||||||||| || || ||||||  ||||| ||| ||||  | ||||| ||||||||| |||||||||||||||||| |||||| ||||||||    
T  47645967 aaaggatgatataggcatgttaagaaaaaaagggtaataagtaatatattgaaaacacttaaatttttaataaggacgattttgtcatttaa 47646058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 71; Significance: 6e-32; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 71; E-Value: 6e-32
Query Start/End: Original strand, 14 - 135
Target Start/End: Original strand, 20219518 - 20219640
Alignment:
Q  14 atgacattggtatgttacaaaaaagaggataatgtgcaatatgttgaaaaca-ttaaatttttaataaggatgattttatcatttaaaaataaatacgaa 112  Q
    |||||||||| ||||||||||||||||| ||||  ||| |||||||||| || |||||||||||||||||| |||||| ||||||||||||||||| ||     
T  20219518 atgacattggcatgttacaaaaaagagggtaataagcagtatgttgaaagcacttaaatttttaataaggacgattttgtcatttaaaaataaatatgag 20219617  T
Q  113 gataattatctcaatgtaattaa 135  Q
    ||||||||| |||||||||||||    
T  20219618 gataattatgtcaatgtaattaa 20219640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 71; E-Value: 6e-32
Query Start/End: Original strand, 14 - 135
Target Start/End: Original strand, 22113543 - 22113665
Alignment:
Q  14 atgacattggtatgttacaaaaaagaggataatgtgcaatatgttgaaaaca-ttaaatttttaataaggatgattttatcatttaaaaataaatacgaa 112  Q
    |||||||||| ||||||||||||||||| ||||  ||| |||||||||| || |||||||||||||||||| |||||| ||||||||||||||||| ||     
T  22113543 atgacattggcatgttacaaaaaagagggtaataagcagtatgttgaaagcacttaaatttttaataaggacgattttgtcatttaaaaataaatatgag 22113642  T
Q  113 gataattatctcaatgtaattaa 135  Q
    ||||||||| |||||||||||||    
T  22113643 gataattatgtcaatgtaattaa 22113665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 49 - 135
Target Start/End: Original strand, 11455693 - 11455780
Alignment:
Q  49 gcaatatgttgaaaaca-ttaaatttttaataaggatgattttatcatttaaaaataaatacgaagataattatctcaatgtaattaa 135  Q
    ||||||| |||| |||| |||||||||||||||||| |||||| |||||||||||| |||| || ||||||||| ||||| |||||||    
T  11455693 gcaatatattgacaacacttaaatttttaataaggacgattttgtcatttaaaaatgaatatgaggataattatgtcaatataattaa 11455780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 71; Significance: 6e-32; HSPs: 13)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 71; E-Value: 6e-32
Query Start/End: Original strand, 14 - 135
Target Start/End: Original strand, 44565549 - 44565671
Alignment:
Q  14 atgacattggtatgttacaaaaaagaggataatgtgcaatatgttgaaaaca-ttaaatttttaataaggatgattttatcatttaaaaataaatacgaa 112  Q
    |||||||||| ||||||||||||| | ||||||  ||||||||||||||||| |||||||||||||||||||| |||| ||||||||||||||| | ||     
T  44565549 atgacattggcatgttacaaaaaaaatgataataagcaatatgttgaaaacacttaaatttttaataaggatggttttgtcatttaaaaataaacatgag 44565648  T
Q  113 gataattatctcaatgtaattaa 135  Q
    ||||||||| |||||||||||||    
T  44565649 gataattatatcaatgtaattaa 44565671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 15 - 135
Target Start/End: Original strand, 42887150 - 42887271
Alignment:
Q  15 tgacattggtatgttacaaaaaagaggataatgtgcaatatgttgaaaaca-ttaaatttttaataaggatgattttatcatttaaaaataaatacgaag 113  Q
    ||||||||| ||||||||||||||| | ||||  ||||||||||||||||| |||||||||||||||||| | |||| ||||||||||||||| | || |    
T  42887150 tgacattggcatgttacaaaaaagatggtaataagcaatatgttgaaaacacttaaatttttaataaggacggttttgtcatttaaaaataaacatgagg 42887249  T
Q  114 ataattatctcaatgtaattaa 135  Q
    |||||||| |||||||||||||    
T  42887250 ataattatgtcaatgtaattaa 42887271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 59; E-Value: 9e-25
Query Start/End: Original strand, 14 - 135
Target Start/End: Complemental strand, 2326423 - 2326301
Alignment:
Q  14 atgacattggtatgttacaaaaaagaggataatgtgcaatatgttgaaaaca-ttaaatttttaataaggatgattttatcatttaaaaataaatacgaa 112  Q
    |||||||||| ||||||||||||||| | ||||  | ||||||||||||||| |||||||||||||||||| |  ||| ||||||||||||||| | ||     
T  2326423 atgacattggcatgttacaaaaaagatggtaataagtaatatgttgaaaacacttaaatttttaataaggacggatttgtcatttaaaaataaacatgag 2326324  T
Q  113 gataattatctcaatgtaattaa 135  Q
    ||||||||| |||||||||||||    
T  2326323 gataattatgtcaatgtaattaa 2326301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 15 - 135
Target Start/End: Complemental strand, 261319 - 261198
Alignment:
Q  15 tgacattggtatgttacaaaaaagaggataatgtgcaatatgttgaaaaca-ttaaatttttaataaggatgattttatcatttaaaaataaatacgaag 113  Q
    ||||||||  ||||||||||||||| | ||||  ||||||||||||||||| |||||||||||||||||| | |||  ||||||||||||||| | || |    
T  261319 tgacattgccatgttacaaaaaagatggtaataagcaatatgttgaaaacacttaaatttttaataaggacggtttagtcatttaaaaataaacatgagg 261220  T
Q  114 ataattatctcaatgtaattaa 135  Q
    |||||||| |||||||||||||    
T  261219 ataattatgtcaatgtaattaa 261198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 28 - 135
Target Start/End: Complemental strand, 17307174 - 17307066
Alignment:
Q  28 ttacaaaaaagaggataatgtgcaatatgttgaaaaca-ttaaatttttaataaggatgattttatcatttaaaaataaatacgaagataattatctcaa 126  Q
    |||||||||||||| |||   |||||||| |||||||| |||||||||||||||||| |||||||| ||||||||||||||  || ||||||||| ||||    
T  17307174 ttacaaaaaagagggtaacaagcaatatgctgaaaacacttaaatttttaataaggacgattttattatttaaaaataaatttgaggataattatgtcaa 17307075  T
Q  127 tgtaattaa 135  Q
    |||||||||    
T  17307074 tgtaattaa 17307066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 15 - 135
Target Start/End: Original strand, 46833690 - 46833811
Alignment:
Q  15 tgacattggtatgttacaaaaaagaggataatgtgcaatatgttgaaaaca-ttaaatttttaataaggatgattttatcatttaaaaataaatacgaag 113  Q
    ||||||||  |||||||||||||||   ||||  ||||||||||||||||| ||||||||||||||||||  ||||| ||||||||||||||| | || |    
T  46833690 tgacattgacatgttacaaaaaagattgtaataagcaatatgttgaaaacacttaaatttttaataaggacaattttgtcatttaaaaataaacatgagg 46833789  T
Q  114 ataattatctcaatgtaattaa 135  Q
    |||||| | |||||||||||||    
T  46833790 ataattgtgtcaatgtaattaa 46833811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 15 - 135
Target Start/End: Complemental strand, 49622486 - 49622367
Alignment:
Q  15 tgacattggtatgttacaaaaaagaggataatgtgcaatatgttgaaaaca-ttaaatttttaataaggatgattttatcatttaaaaataaatacgaag 113  Q
    ||||||||| ||||||||||||||| | ||||  ||||||||||||||||| |||||||||||||||| | | |||| ||||||||||||||| | || |    
T  49622486 tgacattggcatgttacaaaaaagatggtaataagcaatatgttgaaaacacttaaatttttaataagaacggttttgtcatttaaaaataaacatgagg 49622387  T
Q  114 ataattatctcaatgtaattaa 135  Q
    |||||  | |||||||||||||    
T  49622386 ataat--tgtcaatgtaattaa 49622367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 15 - 135
Target Start/End: Complemental strand, 51621457 - 51621337
Alignment:
Q  15 tgacattggtatgttacaaaaaagaggataatgtgcaatatgttgaaaaca-ttaaatttttaataaggatgattttatcatttaaaaataaatacgaag 113  Q
    ||||||||| |||||||| |||||| | ||||  ||||||||||||||||| |||||||||||||||||| |  ||| ||||||||||||||| | || |    
T  51621457 tgacattggcatgttacagaaaagatggtaataagcaatatgttgaaaacacttaaatttttaataaggacggatttttcatttaaaaataaacatgagg 51621358  T
Q  114 ataattatctcaatgtaattaa 135  Q
    || ||||| |||||||||||||    
T  51621357 at-attatgtcaatgtaattaa 51621337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 49 - 135
Target Start/End: Original strand, 15545037 - 15545124
Alignment:
Q  49 gcaatatgttgaaaaca-ttaaatttttaataaggatgattttatcatttaaaaataaatacgaagataattatctcaatgtaattaa 135  Q
    ||||||||||||||||| |||||||||||||||||  | |||| ||||||||||||||| | || ||||||||| |||||||||||||    
T  15545037 gcaatatgttgaaaacacttaaatttttaataaggtcggttttgtcatttaaaaataaacatgaggataattatgtcaatgtaattaa 15545124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 49 - 135
Target Start/End: Complemental strand, 21373527 - 21373441
Alignment:
Q  49 gcaatatgttgaaaacattaaatttttaataaggatgattttatcatttaaaaataaatacgaagataattatctcaatgtaattaa 135  Q
    ||||||| ||||||   ||||||||||||||||||||||||| |||||||||||| |||| || ||||||||| ||||| |||||||    
T  21373527 gcaatatattgaaacacttaaatttttaataaggatgattttgtcatttaaaaatgaatatgaggataattatgtcaatataattaa 21373441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 15 - 135
Target Start/End: Original strand, 29743934 - 29744055
Alignment:
Q  15 tgacattggtatgttacaaaaaagaggataatgtgcaatatgttgaaaaca-ttaaatttttaataaggatgattttatcatttaaaaataaatacgaag 113  Q
    ||||||||| | ||| ||||||||| | ||||  ||||||||||||||||| |||| |||||||||||||    ||| ||||||||||||||| | || |    
T  29743934 tgacattggcaagttgcaaaaaagatggtaataagcaatatgttgaaaacacttaagtttttaataaggacagatttgtcatttaaaaataaacatgagg 29744033  T
Q  114 ataattatctcaatgtaattaa 135  Q
    |||||||| |||||||||||||    
T  29744034 ataattatgtcaatgtaattaa 29744055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 49 - 135
Target Start/End: Original strand, 33506239 - 33506326
Alignment:
Q  49 gcaatatgttgaaaaca-ttaaatttttaataaggatgattttatcatttaaaaataaatacgaagataattatctcaatgtaattaa 135  Q
    ||||||| ||||||||| |||||||||||||||||| |||||| | ||||||||||||||| || ||||||||  |||| ||||||||    
T  33506239 gcaatatattgaaaacacttaaatttttaataaggacgattttgttatttaaaaataaatatgaggataattacgtcaacgtaattaa 33506326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 49 - 135
Target Start/End: Complemental strand, 37661521 - 37661435
Alignment:
Q  49 gcaatatgttgaaaacattaaatttttaataaggatgattttatcatttaaaaataaatacgaagataattatctcaatgtaattaa 135  Q
    ||||||| ||||||   |||||||||||||||||| |||||| |||||||||||| |||| || ||||||||| ||||| |||||||    
T  37661521 gcaatatattgaaacacttaaatttttaataaggacgattttgtcatttaaaaatgaatatgaggataattatgtcaatataattaa 37661435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 68; Significance: 4e-30; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 15 - 133
Target Start/End: Complemental strand, 6610372 - 6610253
Alignment:
Q  15 tgacattggtatgttacaaaaaagaggataatgtgcaatatgttgaaaaca-ttaaatttttaataaggatgattttatcatttaaaaataaatacgaag 113  Q
    ||||||||| ||||||||||||||| | ||||  ||||||||||||||||| |||||||||||||||||| | |||||||||||||||||||| | || |    
T  6610372 tgacattggcatgttacaaaaaagatggtaataagcaatatgttgaaaacacttaaatttttaataaggacggttttatcatttaaaaataaacatgagg 6610273  T
Q  114 ataattatctcaatgtaatt 133  Q
    |||||||| |||||||||||    
T  6610272 ataattatgtcaatgtaatt 6610253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 49 - 135
Target Start/End: Original strand, 40978120 - 40978206
Alignment:
Q  49 gcaatatgttgaaaacattaaatttttaataaggatgattttatcatttaaaaataaatacgaagataattatctcaatgtaattaa 135  Q
    ||||||| ||||||||| ||||||||||||||||| |||||| | ||||||||||||||| |||||||||||| |||| ||||||||    
T  40978120 gcaatatattgaaaacactaaatttttaataaggacgattttgttatttaaaaataaatatgaagataattatgtcaacgtaattaa 40978206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 15 - 135
Target Start/End: Original strand, 43634151 - 43634272
Alignment:
Q  15 tgacattggtatgttac-aaaaaagaggataatgtgcaatatgttgaaaacattaaatttttaataaggatgattttatcatttaaaaataaatacgaag 113  Q
    ||||||||| ||||||| |||||||| | ||||  ||||||| |||||||||   ||||||||||||||| | |||| ||||||||||||||| | || |    
T  43634151 tgacattggcatgttactaaaaaagatggtaataagcaatatattgaaaacacctaatttttaataaggacggttttgtcatttaaaaataaacatgagg 43634250  T
Q  114 ataattatctcaatgtaattaa 135  Q
    |||||||| |||||||||||||    
T  43634251 ataattatgtcaatgtaattaa 43634272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 49 - 135
Target Start/End: Original strand, 2956516 - 2956603
Alignment:
Q  49 gcaatatgttgaaaaca-ttaaatttttaataaggatgattttatcatttaaaaataaatacgaagataattatctcaatgtaattaa 135  Q
    ||||||| ||||||||| |||||||||||||||||| |||||| |||||||||||| |||| || ||||||||| ||||| |||||||    
T  2956516 gcaatatattgaaaacacttaaatttttaataaggacgattttgtcatttaaaaatgaatatgaggataattatgtcaatataattaa 2956603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 52 - 135
Target Start/End: Complemental strand, 21594792 - 21594708
Alignment:
Q  52 atatgttgaaaaca-ttaaatttttaataaggatgattttatcatttaaaaataaatacgaagataattatctcaatgtaattaa 135  Q
    |||| ||||||||| ||||||||| ||||||| ||||||| ||||||||||||||||| ||  |||||||| |||||||||||||    
T  21594792 atatattgaaaacacttaaattttaaataaggttgattttgtcatttaaaaataaatatgagaataattatgtcaatgtaattaa 21594708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 49 - 135
Target Start/End: Original strand, 36557617 - 36557704
Alignment:
Q  49 gcaatatgttgaaaaca-ttaaatttttaataaggatgattttatcatttaaaaataaatacgaagataattatctcaatgtaattaa 135  Q
    ||||||| || |||||| |||||||||||||||| | |||||| |||||||||||| |||| || ||||||||| ||||| |||||||    
T  36557617 gcaatatattaaaaacacttaaatttttaataagaacgattttgtcatttaaaaatgaatatgaggataattatgtcaatataattaa 36557704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 49 - 135
Target Start/End: Original strand, 43048459 - 43048545
Alignment:
Q  49 gcaatatgttgaaaacattaaatttttaataaggatgattttatcatttaaaaataaatacgaagataattatctcaatgtaattaa 135  Q
    ||||||| ||||||   ||||||||||||||||||  ||||| |||||||||||| |||| ||  |||||||| ||||| |||||||    
T  43048459 gcaatatattgaaacacttaaatttttaataaggacaattttgtcatttaaaaatgaatatgagaataattatgtcaatataattaa 43048545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 66 - 135
Target Start/End: Complemental strand, 27424116 - 27424047
Alignment:
Q  66 ttaaatttttaataaggatgattttatcatttaaaaataaatacgaagataattatctcaatgtaattaa 135  Q
    ||||||||| ||||||||||||||||  |||| ||||||||||  ||||||| ||| ||||| |||||||    
T  27424116 ttaaattttcaataaggatgattttagtattttaaaataaatataaagataaatatgtcaatataattaa 27424047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0735 (Bit Score: 66; Significance: 6e-29; HSPs: 1)
Name: scaffold0735
Description:

Target: scaffold0735; HSP #1
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 15 - 135
Target Start/End: Original strand, 103 - 224
Alignment:
Q  15 tgacattggtatgttacaaaaaagaggataatgtgcaatatgttgaaaaca-ttaaatttttaataaggatgattttatcatttaaaaataaatacgaag 113  Q
    ||||||||| ||||||||||||||| | ||||  ||||||||||||||||| |||||||||||||||||| | |||| ||||||||||||||| | || |    
T  103 tgacattggcatgttacaaaaaagatggtaataagcaatatgttgaaaacacttaaatttttaataaggacggttttgtcatttaaaaataaacatgagg 202  T
Q  114 ataattatctcaatgtaattaa 135  Q
    |||||||| |||||||||||||    
T  203 ataattatgtcaatgtaattaa 224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 66; Significance: 6e-29; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 15 - 135
Target Start/End: Original strand, 35384657 - 35384778
Alignment:
Q  15 tgacattggtatgttacaaaaaagaggataatgtgcaatatgttgaaaaca-ttaaatttttaataaggatgattttatcatttaaaaataaatacgaag 113  Q
    ||||||||| ||||||||||||||| | ||||  ||||||||||||||||| |||||||||||||||||| | |||| ||||||||||||||| | || |    
T  35384657 tgacattggcatgttacaaaaaagatggtaataagcaatatgttgaaaacacttaaatttttaataaggacggttttgtcatttaaaaataaacaggagg 35384756  T
Q  114 ataattatctcaatgtaattaa 135  Q
    |||||||| |||||||||||||    
T  35384757 ataattatgtcaatgtaattaa 35384778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 15 - 135
Target Start/End: Complemental strand, 16618003 - 16617882
Alignment:
Q  15 tgacattggtatgttacaaaaaagaggataatgtgcaatatgttgaaaaca-ttaaatttttaataaggatgattttatcatttaaaaataaatacgaag 113  Q
    ||||||||  ||||||||||||||| | ||||  ||||||||||||||||| |||||||||||||||||| | |||| ||||||||||||||| | || |    
T  16618003 tgacattgacatgttacaaaaaagatggtaataagcaatatgttgaaaacacttaaatttttaataaggacggttttgtcatttaaaaataaacatgagg 16617904  T
Q  114 ataattatctcaatgtaattaa 135  Q
    |||||||| ||||| |||||||    
T  16617903 ataattatgtcaatataattaa 16617882  T

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Target: chr5; HSP #3
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 15 - 135
Target Start/End: Complemental strand, 30404364 - 30404243
Alignment:
Q  15 tgacattggtatgttacaaaaaagaggataatgtgcaatatgttgaaaaca-ttaaatttttaataaggatgattttatcatttaaaaataaatacgaag 113  Q
    ||||||||  |||||||||||||||   ||||  ||||||||||||||||| |||||||||||||||||| | |||| ||||||||||||||| | || |    
T  30404364 tgacattgacatgttacaaaaaagatagtaataagcaatatgttgaaaacacttaaatttttaataaggacggttttgtcatttaaaaataaacatgagg 30404265  T
Q  114 ataattatctcaatgtaattaa 135  Q
    |||||||| | |||||||||||    
T  30404264 ataattatgttaatgtaattaa 30404243  T

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Target: chr5; HSP #4
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 55 - 135
Target Start/End: Complemental strand, 18672975 - 18672894
Alignment:
Q  55 tgttgaaaaca-ttaaatttttaataaggatgattttatcatttaaaaataaatacgaagataattatctcaatgtaattaa 135  Q
    ||||||||||| |||||||||||||||||| | |||||||||||||||||||| | || ||||||||| ||||| |||||||    
T  18672975 tgttgaaaacacttaaatttttaataaggacggttttatcatttaaaaataaacatgaggataattatgtcaatataattaa 18672894  T

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Target: chr5; HSP #5
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 49 - 135
Target Start/End: Complemental strand, 10329322 - 10329235
Alignment:
Q  49 gcaatatgttgaaaaca-ttaaatttttaataaggatgattttatcatttaaaaataaatacgaagataattatctcaatgtaattaa 135  Q
    ||||||| ||||||||| |||||||||||||||||| |||||| |||||| ||||| |||| || ||||||||| ||||| |||||||    
T  10329322 gcaatatattgaaaacacttaaatttttaataaggacgattttgtcattttaaaatgaatatgaggataattatgtcaatataattaa 10329235  T

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Target: chr5; HSP #6
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 49 - 135
Target Start/End: Original strand, 2956109 - 2956195
Alignment:
Q  49 gcaatatgttgaaaacattaaatttttaataaggatgattttatcatttaaaaataaatacgaagataattatctcaatgtaattaa 135  Q
    ||||||| ||||||   |||||||||||||||||| |||||| |||||||||||| |||| || ||||||||| ||||| |||||||    
T  2956109 gcaatatattgaaacacttaaatttttaataaggacgattttttcatttaaaaatgaatatgaggataattatgtcaatataattaa 2956195  T

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Target: chr5; HSP #7
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 49 - 135
Target Start/End: Original strand, 37276511 - 37276598
Alignment:
Q  49 gcaatatgttgaaaaca-ttaaatttttaataaggatgattttatcatttaaaaataaatacgaagataattatctcaatgtaattaa 135  Q
    ||||||| ||||||||| || ||||||||| ||||| |||||| ||||||| |||||||||  | ||||||||| |||||||||||||    
T  37276511 gcaatatattgaaaacacttcaatttttaacaaggaagattttgtcatttataaataaatataaggataattatgtcaatgtaattaa 37276598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 66 - 135
Target Start/End: Original strand, 1751895 - 1751964
Alignment:
Q  66 ttaaatttttaataaggatgattttatcatttaaaaataaatacgaagataattatctcaatgtaattaa 135  Q
    ||||||||| |||||||| |||||| |||||||||||| |||| || ||||||||| ||||| |||||||    
T  1751895 ttaaattttaaataaggacgattttgtcatttaaaaatgaatatgaggataattatgtcaatataattaa 1751964  T

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Target: chr2 (Bit Score: 66; Significance: 6e-29; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 15 - 135
Target Start/End: Complemental strand, 35734185 - 35734064
Alignment:
Q  15 tgacattggtatgttacaaaaaagaggataatgtgcaatatgttgaaaaca-ttaaatttttaataaggatgattttatcatttaaaaataaatacgaag 113  Q
    ||||||||| ||||||||||||||| | ||||  ||||||||||||||||| |||||||||||||||||| | |||| ||||| ||||||||| | ||||    
T  35734185 tgacattggcatgttacaaaaaagatggtaataagcaatatgttgaaaacacttaaatttttaataaggacggttttgtcattaaaaaataaacatgaag 35734086  T
Q  114 ataattatctcaatgtaattaa 135  Q
    |||||||| |||||||||||||    
T  35734085 ataattatgtcaatgtaattaa 35734064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 15 - 135
Target Start/End: Complemental strand, 7758835 - 7758715
Alignment:
Q  15 tgacattggtatgttacaaaaaagaggataatgtgcaatatgttgaaaaca-ttaaatttttaataaggatgattttatcatttaaaaataaatacgaag 113  Q
    ||||||||  ||||||||||||||| | ||||  ||||||||||||||||| |||||||||||||||||||| |||| ||||||||||||||| | || |    
T  7758835 tgacattgacatgttacaaaaaagatggtaata-gcaatatgttgaaaacacttaaatttttaataaggatggttttgtcatttaaaaataaacatgagg 7758737  T
Q  114 ataattatctcaatgtaattaa 135  Q
    |||||||| |||||||||||||    
T  7758736 ataattatgtcaatgtaattaa 7758715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 15 - 135
Target Start/End: Original strand, 28809207 - 28809328
Alignment:
Q  15 tgacattggtatgttacaaaaaagaggataatgtgcaatatgttgaaaaca-ttaaatttttaataaggatgattttatcatttaaaaataaatacgaag 113  Q
    ||||||||| ||||||||||||||| | ||||  ||||||||||||||||| |||||||||||||||||| | |||| ||||||||||||||| | |  |    
T  28809207 tgacattggcatgttacaaaaaagatggtaataagcaatatgttgaaaacacttaaatttttaataaggacggttttgtcatttaaaaataaacatgtgg 28809306  T
Q  114 ataattatctcaatgtaattaa 135  Q
    |||||||| |||||||||||||    
T  28809307 ataattatgtcaatgtaattaa 28809328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 15 - 135
Target Start/End: Original strand, 10356152 - 10356273
Alignment:
Q  15 tgacattggtatgttacaaaaaagaggataatgtgcaatatgttgaaaaca-ttaaatttttaataaggatgattttatcatttaaaaataaatacgaag 113  Q
    ||||||||| ||||||||||||||| | ||||  | ||||||||||||||| |||||||||||||||||| |  ||| ||||||||||||||| | || |    
T  10356152 tgacattggcatgttacaaaaaagatggtaataagaaatatgttgaaaacacttaaatttttaataaggacggatttttcatttaaaaataaacatgagg 10356251  T
Q  114 ataattatctcaatgtaattaa 135  Q
    |||||||| |||||||||||||    
T  10356252 ataattatgtcaatgtaattaa 10356273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 49 - 135
Target Start/End: Complemental strand, 34209966 - 34209879
Alignment:
Q  49 gcaatatgttgaaaaca-ttaaatttttaataaggatgattttatcatttaaaaataaatacgaagataattatctcaatgtaattaa 135  Q
    ||||||| ||||||||| |||||||||||||||||| |||||| | ||||||||||||||| || ||||||||| |||| ||||||||    
T  34209966 gcaatatattgaaaacacttaaatttttaataaggacgattttgttatttaaaaataaatatgaggataattatgtcaacgtaattaa 34209879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 49 - 135
Target Start/End: Complemental strand, 43589429 - 43589342
Alignment:
Q  49 gcaatatgttgaaaaca-ttaaatttttaataaggatgattttatcatttaaaaataaatacgaagataattatctcaatgtaattaa 135  Q
    ||||||| ||||||||| |||||||||||||||||| |||||| |||||||||||  |||| || ||||||||| ||||| |||||||    
T  43589429 gcaatatattgaaaacacttaaatttttaataaggacgattttgtcatttaaaaaggaatatgaggataattatgtcaatataattaa 43589342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 49 - 135
Target Start/End: Original strand, 16256724 - 16256811
Alignment:
Q  49 gcaatatgttgaaaaca-ttaaatttttaataaggatgattttatcatttaaaaataaatacgaagataattatctcaatgtaattaa 135  Q
    ||||||| ||||||||| ||||||||||||||||||  ||||| |||||||||||| |||  || ||||||||| ||||| |||||||    
T  16256724 gcaatatattgaaaacacttaaatttttaataaggacaattttgtcatttaaaaatgaatgtgaggataattatgtcaatataattaa 16256811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 54 - 135
Target Start/End: Original strand, 16255910 - 16255992
Alignment:
Q  54 atgttgaaaaca-ttaaatttttaataaggatgattttatcatttaaaaataaatacgaagataattatctcaatgtaattaa 135  Q
    |||||||||||| |||||||||||||||||| | |||| | ||||||||||||| | || |||| |||| |||||||||||||    
T  16255910 atgttgaaaacacttaaatttttaataaggacggttttgttatttaaaaataaacatgaggatacttatgtcaatgtaattaa 16255992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1251 (Bit Score: 44; Significance: 8e-16; HSPs: 1)
Name: scaffold1251
Description:

Target: scaffold1251; HSP #1
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 49 - 135
Target Start/End: Original strand, 117 - 204
Alignment:
Q  49 gcaatatgttgaaaaca-ttaaatttttaataaggatgattttatcatttaaaaataaatacgaagataattatctcaatgtaattaa 135  Q
    ||||||| || |||||| |||||||||||||||||| |||||| |||||||||||| |||| || ||||||||| ||||| |||||||    
T  117 gcaatatattaaaaacacttaaatttttaataaggacgattttgtcatttaaaaatgaatatgaggataattatgtcaatataattaa 204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 44; Significance: 8e-16; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 49 - 135
Target Start/End: Complemental strand, 46485071 - 46484985
Alignment:
Q  49 gcaatatgttgaaaaca-ttaaatttttaataaggatgattttatcatttaaaaataaatacgaagataattatctcaatgtaattaa 135  Q
    ||||||| ||||||||| |||||||||||||||||| |||||| |||||||||||| |||| || ||||||||| ||||| |||||||    
T  46485071 gcaatatattgaaaacacttaaatttttaataagga-gattttgtcatttaaaaatgaatatgaggataattatgtcaatataattaa 46484985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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