View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11720_low_7 (Length: 484)
Name: NF11720_low_7
Description: NF11720
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11720_low_7 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 458; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 458; E-Value: 0
Query Start/End: Original strand, 8 - 469
Target Start/End: Complemental strand, 50764808 - 50764347
Alignment:
| Q |
8 |
cacagagaataaagctgcacgatgacataacagaagcagcaaccagttgcaactatggaaataagccaagaaacatttgacaataagctaagaatgacca |
107 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
50764808 |
cacagagaataaagctgcacgatgacataacagaagcagcaaccagttgcaactatggaaataagccaagaaacatttgacaataagctaagaatgacca |
50764709 |
T |
|
| Q |
108 |
aagaaaaccctaaatgaatcaaagtgatagaaaacaacttgataagcctctcaaattgcttcaccaacatctaatttgaagaaaacttttagcatggatc |
207 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
50764708 |
aagaaaaccctaaatgaatcaaagtgatagaaaacaacttgataagcctctcaaattgcttcaccaacatctaatttgaagaaaacttttagcatggatc |
50764609 |
T |
|
| Q |
208 |
tcattctgaatttgtctaacatttgactatgaacctaaacttttgcaaaaagccccgaattacaactgattaaaaacattcatcctccacaaacatagaa |
307 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
50764608 |
tcattctgaatttgtctaacatttgactatgaacctaaacttttgcaaaaagccccgaattacaactgattaaaaacattcatcctccacaaacatagaa |
50764509 |
T |
|
| Q |
308 |
taacagtctcaatcatgtcttcatccacctgatcagcttcatgactgaatcttaacctctttaataatactatttgacatgcttaatacaaagcacatta |
407 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
50764508 |
taacagtctcaatcatgtcttcatccacctgatcagcttcatgactgaatcttaacctctttaataatactatttgacatgcttaatacaaagcacatta |
50764409 |
T |
|
| Q |
408 |
ctagccaaagagaaatagtatgccatagttatagttttttaatagttccacatagtgagaaa |
469 |
Q |
| |
|
| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
50764408 |
cgagccaaagagaaatagtatgccatagttatagttttttaatagttccacatagtgagaaa |
50764347 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 63; Significance: 3e-27; HSPs: 5)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 304 - 398
Target Start/End: Complemental strand, 30696215 - 30696121
Alignment:
| Q |
304 |
agaataacagtctcaatcatgtcttcatccacctgatcagcttcatgactgaatcttaacctctttaataatactatttgacatgcttaatacaa |
398 |
Q |
| |
|
||||||||||| ||||||||||||||| ||||||||||| |||||||| ||||||||||||| ||||||||||||||||| | ||||||||||| |
|
|
| T |
30696215 |
agaataacagtaccaatcatgtcttcattcacctgatcaggttcatgaccgaatcttaacctcattaataatactatttgataagcttaatacaa |
30696121 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 264 - 342
Target Start/End: Original strand, 35100847 - 35100925
Alignment:
| Q |
264 |
gaattacaactgattaaaaacattcatcctccacaaacatagaataacagtctcaatcatgtcttcatccacctgatca |
342 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||||||| |||| | ||||||||||||| |||||||||| |
|
|
| T |
35100847 |
gaattacaactgattaaaaacattcatcctccacaaatatagaataccagtgcctatcatgtcttcattcacctgatca |
35100925 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 154 - 366
Target Start/End: Complemental strand, 35153576 - 35153354
Alignment:
| Q |
154 |
cctctcaaattgcttcaccaa---catctaatttgaagaaaacttttagcatggatctcattctgaatttgtctaacatttgact---atgaacctaaac |
247 |
Q |
| |
|
||||||||||||||||||||| ||||| |||||||||||||||| ||||||| |||||||||||||||||| ||||| |||| ||||||| | || |
|
|
| T |
35153576 |
cctctcaaattgcttcaccaataacatcttatttgaagaaaactttaagcatgg-tctcattctgaatttgtccaacatgagactatgatgaaccaagac |
35153478 |
T |
|
| Q |
248 |
tt------ttgcaaaaagccccgaattacaactgattaaaaacattcatcctccacaaacatagaataacagtctcaatcatgtcttcatccacctgatc |
341 |
Q |
| |
|
|| ||| | ||| |||||||| ||||| ||| ||||||||||||||||||||||||||||| ||| | ||||||||||||| |||| || | |
|
|
| T |
35153477 |
ttatgaagttgagagaagtcccgaattgcaactaattcaaaacattcatcctccacaaacatagaat-acaatacttatcatgtcttcattcaccggacc |
35153379 |
T |
|
| Q |
342 |
agcttcatgactgaatcttaacctc |
366 |
Q |
| |
|
|| |||||||| ||| | ||||||| |
|
|
| T |
35153378 |
aggttcatgacagaaccgtaacctc |
35153354 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 264 - 339
Target Start/End: Original strand, 35040556 - 35040631
Alignment:
| Q |
264 |
gaattacaactgattaaaaacattcatcctccacaaacatagaataacagtctcaatcatgtcttcatccacctga |
339 |
Q |
| |
|
|||||||||||||||||| |||||||||||| ||||||||||||||||||| | ||||||||||||| ||||||| |
|
|
| T |
35040556 |
gaattacaactgattaaatacattcatcctctacaaacatagaataacagtgactatcatgtcttcattcacctga |
35040631 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 285 - 366
Target Start/End: Original strand, 35092156 - 35092237
Alignment:
| Q |
285 |
attcatcctccacaaacatagaataacagtctcaatcatgtcttcatccacctgatcagcttcatgactgaatcttaacctc |
366 |
Q |
| |
|
||||| |||||||||||||| ||||||||| | | || ||||||| ||||||||||| |||||||| ||| | ||||||| |
|
|
| T |
35092156 |
attcaccctccacaaacatacaataacagtaactaggatatcttcattcacctgatcaggttcatgacagaaccataacctc |
35092237 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University