View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11720_low_8 (Length: 464)
Name: NF11720_low_8
Description: NF11720
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11720_low_8 |
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Alignment Details
Target: chr1 (Bit Score: 375; Significance: 0; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 375; E-Value: 0
Query Start/End: Original strand, 1 - 446
Target Start/End: Original strand, 9298935 - 9299395
Alignment:
| Q |
1 |
atatcatcttctgtctactttatccctctcttgctctatatattaaattataccagtttaaagttctaagaatcccttcaacatgtcactgatattaaca |
100 |
Q |
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| T |
9298935 |
atatcatcttctttctactttatccctctcttgctctatatattaaattataccagtttaaagttctaagaatcccttcaacatgtcactgatattaaca |
9299034 |
T |
|
| Q |
101 |
aaacttgctatgctgctatttctaatgaaccttggaaattgtctcagtgattcatccaatcgatgtcccttcaagctcgaatgtacgcataacaaaaaga |
200 |
Q |
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| T |
9299035 |
aaacttgctatgctgctatttctaatgaaccttggaaattgtctcagtgattcatccaatcgatgtcccttcaagctcgaatgtacacataacaaaaaga |
9299134 |
T |
|
| Q |
201 |
ttcttgaacttcctactcaaccagtccctgtgaaactcatcctcactgacattgattatacaaacccaagaatagatttatctgatcctggaaattgttt |
300 |
Q |
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| T |
9299135 |
ttcttgaacttcctactcaaccagtccctgtgaaactcatcctcactgacattgattatacagacccaagaatagatttatctgatcctggaaattgttt |
9299234 |
T |
|
| Q |
301 |
accacagctcttacttgaccacaacttttcatcaatttttcctgttaagccttatatctccg---------------gaaatatcagtttcttcaattgt |
385 |
Q |
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| T |
9299235 |
accacaactcttacttgaccacaacttttcatcaatttttccttttaagccttatctctccggatattctgtatctagaaatatcagtttcttcaattgt |
9299334 |
T |
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| Q |
386 |
tcttcagttgtacaactctgaagctactctcaagtgtacgaagcacaaaatatgacatcat |
446 |
Q |
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| T |
9299335 |
tcttcagttgtacaactcagaagctacaatcaagtgtacgaagcacaaaatatgacatcat |
9299395 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 130 - 337
Target Start/End: Complemental strand, 9258649 - 9258442
Alignment:
| Q |
130 |
ccttggaaattgtctcagtgattcatccaatcgatgtcccttcaagctcgaatgtacgcataacaaaaagattcttgaacttcctactcaaccagtccct |
229 |
Q |
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|||||||||| |||| |||||| | |||| | ||||||||||||||||| | ||||| ||||||| || |||||||||||||||||||| ||||| ||| |
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| T |
9258649 |
ccttggaaatggtctaagtgatgcttccattggatgtcccttcaagctcaactgtacacataacatgaatattcttgaacttcctactcacccagttcct |
9258550 |
T |
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| Q |
230 |
gtgaaactcatcctcactgacattgattatacaaacccaagaatagatttatctgatcctggaaattgtttaccacagctcttacttgaccacaactttt |
329 |
Q |
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||||||||||| |||| |||||||||||| | ||| |||||| |||||||| | ||||||||||||| || |||||| ||||||||||||||| |
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| T |
9258549 |
gtgaaactcatggtcacagacattgattatcgtttcaaaagtatagatctatctgataccagaaattgtttaccgcaactcttatttgaccacaactttt |
9258450 |
T |
|
| Q |
330 |
catcaatt |
337 |
Q |
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|||||||| |
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| T |
9258449 |
catcaatt |
9258442 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 279 - 349
Target Start/End: Complemental strand, 9467735 - 9467665
Alignment:
| Q |
279 |
tatctgatcctggaaattgtttaccacagctcttacttgaccacaacttttcatcaatttttcctgttaag |
349 |
Q |
| |
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|
| T |
9467735 |
tatctgatcctggaaactgtcttccacaactcttacttgaccgcaatttttcatcaaattttccttttaag |
9467665 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 59; Significance: 8e-25; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 197 - 343
Target Start/End: Original strand, 9170527 - 9170673
Alignment:
| Q |
197 |
aagattcttgaacttcctactcaaccagtccctgtgaaactcatcctcactgacattgattatacaaacccaagaatagatttatctgatcctggaaatt |
296 |
Q |
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||||||||||||||||||||||| || || ||||| ||||| || |||||||||||||||||| | || || | | || |||||||||||||||| | |
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| T |
9170527 |
aagattcttgaacttcctactcatccggtacctgtaaaactaattgtcactgacattgattatagactccaaacattttatctatctgatcctggaaact |
9170626 |
T |
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| Q |
297 |
gtttaccacagctcttacttgaccacaacttttcatcaatttttcct |
343 |
Q |
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| T |
9170627 |
gtctaccgcaactcttacttgacaacaacttttcatcaagttttcct |
9170673 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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