View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11721_high_19 (Length: 578)
Name: NF11721_high_19
Description: NF11721
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11721_high_19 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 539; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 539; E-Value: 0
Query Start/End: Original strand, 14 - 564
Target Start/End: Complemental strand, 40200984 - 40200434
Alignment:
| Q |
14 |
aaaaatacatgttgtgtgatctgattacacacacacagaaataacaatatgcttggaagcaaacatgtcactggggttaacgggtggtttttaagtacgc |
113 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40200984 |
aaaaatacatgttgtgcgatctgattacacacacacagaaataacaatatgcttggaagcaaacatgtcactggggttaacgggtggtttttaagtacgc |
40200885 |
T |
|
| Q |
114 |
tacaccagcaatttcaaacgtgttttgctaagttactaactcaatagtcagatggtagataaattaactatgtttcagctgcttgatcccccttggttta |
213 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40200884 |
tacaccagcaatttcaaacgtgttttgctaagttactaacccaatagtcagatggtagataaattaactatgtttcagctgcttgatcccccttggttta |
40200785 |
T |
|
| Q |
214 |
taattttagaaaaatcaatagaaaattatatatacttttctgtgaaaagaactgtgtaatatcaagcaaaaatagagataagagcaaaacctcactaatg |
313 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40200784 |
taattttagaaaaatcaatagaaaattatatatacttttctgtgaaaagaactgtgtaatatcaagcaaaaatagagataagagcaaaacctcactaatg |
40200685 |
T |
|
| Q |
314 |
aaaggttccatctgattcagtagctgatatccctgcaagagaaagagttttcagatatatatagcataaatgcaatactacatatggaaaagagccattt |
413 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
40200684 |
aaaggttccatctgattcagtagctgatatccctgcaagagaaagagttttcagatatatatagcataagtgcaatactacatatggaaaagagccattt |
40200585 |
T |
|
| Q |
414 |
atgtgattgtcatatgcctgctgaaagtatcgaagatgggcatccataattccagtgacaacctctaaaaactcaaatctcttcttgacctcaatgttat |
513 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40200584 |
atgtgattgtcatatgcctgctgaaagtatcgaagatgggcatccataattccagtgacaacctctaaaaactcaaatctcttcttgacctcaatgttat |
40200485 |
T |
|
| Q |
514 |
taagagcaccaacctaggtcatgaaatatgttatgtataagacctaatgat |
564 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40200484 |
taagagcaccaacctaggtcatgaaatatgttatgtataagacctaatgat |
40200434 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 61; Significance: 6e-26; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 430 - 530
Target Start/End: Complemental strand, 45085469 - 45085369
Alignment:
| Q |
430 |
cctgctgaaagtatcgaagatgggcatccataattccagtgacaacctctaaaaactcaaatctcttcttgacctcaatgttattaagagcaccaaccta |
529 |
Q |
| |
|
|||| ||||||||||||||||| || ||||| | |||||||||| |||| ||||||||||||||||||||| ||||||| |||| ||||||||||||||| |
|
|
| T |
45085469 |
cctgttgaaagtatcgaagatgagcgtccatgactccagtgacagcctccaaaaactcaaatctcttcttggcctcaatattatgaagagcaccaaccta |
45085370 |
T |
|
| Q |
530 |
g |
530 |
Q |
| |
|
| |
|
|
| T |
45085369 |
g |
45085369 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 450 - 517
Target Start/End: Complemental strand, 2381300 - 2381230
Alignment:
| Q |
450 |
tgggcatccataattccagtgacaacctctaaaaactcaaatctcttct---tgacctcaatgttattaag |
517 |
Q |
| |
|
||||||| ||| |||||| ||||||||| |||||||||||||||||||| | ||||||||||||||||| |
|
|
| T |
2381300 |
tgggcattcatgattccaatgacaacctttaaaaactcaaatctcttcttaattacctcaatgttattaag |
2381230 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University