View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11721_high_20 (Length: 569)
Name: NF11721_high_20
Description: NF11721
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11721_high_20 |
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Alignment Details
Target: chr8 (Bit Score: 466; Significance: 0; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 466; E-Value: 0
Query Start/End: Original strand, 17 - 559
Target Start/End: Original strand, 43257879 - 43258415
Alignment:
| Q |
17 |
aaacttgtcaacttttacaatagtaaattggcttaaaaagatcagtatttatgaagtcgcgtatggagaagataatgatgttgaaatgaatttggaagga |
116 |
Q |
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| T |
43257879 |
aaacttgtcaacttttacaatagtaaattggcttaaaaagatcagtatttatgaagtcacgtatggagaagataatgatgttgaaatgaatttggaagga |
43257978 |
T |
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| Q |
117 |
tcgatgaatgttacaacagccgaagaagaaaccaatacaggaactactgctcatgttgatacttcaggtttgctatcaagaaataggtggagataatatc |
216 |
Q |
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| T |
43257979 |
tcgatgaatgttacaacagccgaagaagaaaccaatacaggaactactgctcatgttgatacttcaggtttgctatcaagaaataggtggagataatatc |
43258078 |
T |
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| Q |
217 |
gnnnnnnnnnn---agattttaaattagtttatcatcattgtaaacaaaaagctgtagtcttgtagatgccagctaccatgacaaaagaaataagtccta |
313 |
Q |
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| T |
43258079 |
gtttttttttttttagattttaaattagtttatcatcattgtaaacaaaaagctgtagtcttgtagatgccagctaccatgacaaaagaaataagtccta |
43258178 |
T |
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| Q |
314 |
aggaggtttaggtctaggattagaggatctattttttctttgattcttgaacatgtatgatgtaattaaccagagggaattttaaggtacagatcttttt |
413 |
Q |
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| T |
43258179 |
aggaggtttaggtctaggattagaggatctatttttt---------ttgaacatgtatgatgtaattaaccagagggaattttaaggtacagatcttttt |
43258269 |
T |
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| Q |
414 |
ctcagagatcactagctgcacaatttgccggtggctttcatttatatatgcagctttctttgtcttggacttgaaagattctataggctaatatcaatgt |
513 |
Q |
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| T |
43258270 |
ctcagagatcactagctgcacaatttgccggtggctttcatttatatatgcagctttctttgtcttggacttgaaagattctataggctaatatcaatgt |
43258369 |
T |
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| Q |
514 |
agttgttacatttgacatttctcctttccaataattttcacctttg |
559 |
Q |
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| T |
43258370 |
agttgttacatttgacatttctcctttccaataattttcacctttg |
43258415 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 93; E-Value: 5e-45
Query Start/End: Original strand, 17 - 213
Target Start/End: Original strand, 43255830 - 43256026
Alignment:
| Q |
17 |
aaacttgtcaacttttacaatagtaaattggcttaaaaagatcagtatttatgaagtcgcgtatggagaagataatgatgttgaaatgaatttggaagga |
116 |
Q |
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|||||| |||||||||| | ||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||| ||||| ||||||||||| | | |
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| T |
43255830 |
aaacttttcaacttttagcaaagtaaattggcttaaaaagatcaatatttatgaagtcgcatatggagaagataatgaagttgatatgaatttggatgaa |
43255929 |
T |
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| Q |
117 |
tcgatgaatgttacaacagccgaagaagaaaccaatacaggaactactgctcatgttgatacttcaggtttgctatcaagaaataggtggagataat |
213 |
Q |
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| T |
43255930 |
ttgatgaattctgcaacagtcgatgaagaaattaatgcaggaagtactactaatgtttttacttcaggtttgcaatcaagaaataagtggagataat |
43256026 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 362 - 433
Target Start/End: Original strand, 43256068 - 43256140
Alignment:
| Q |
362 |
gaacatgtatgatgtaattaaccagagggaattttaaggtacagatctttttctc-agagatcactagctgca |
433 |
Q |
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| T |
43256068 |
gaacatgtatgatgtaattatccacaaggaattttaaggtacatatatttatctcaaaagatcactagctgca |
43256140 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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