View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11721_high_23 (Length: 541)
Name: NF11721_high_23
Description: NF11721
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11721_high_23 |
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Alignment Details
Target: chr4 (Bit Score: 487; Significance: 0; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 487; E-Value: 0
Query Start/End: Original strand, 23 - 528
Target Start/End: Complemental strand, 49297265 - 49296758
Alignment:
| Q |
23 |
acttgaatccacctgctgcacattattgcagcaaaggtagaagatccttgtccttaagtggcaccccaaatctatcaattaagttagactaattaattat |
122 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49297265 |
acttgaatccacctgctgcacattattgcagcaaaggtagaagatccttgtccttaagtggcaccccaaatctatcaattaagttagactaattaattat |
49297166 |
T |
|
| Q |
123 |
acctagtgccataatctctaagattaactcaacattgcctctctatataatatataaccaaaaaaggtcaacttattattattaagtagatttgtgtgag |
222 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49297165 |
acctagtgccataatctctaagattaactcaacattgcctctctatata-tatataaccaaaaaaggtcaacttattattattaagtagatttgtgtgag |
49297067 |
T |
|
| Q |
223 |
cctg---gtgagattaaagccaaagagcaccagcttttttaagcattggaattaaggaacggttaagatgaagactcataacttgattggctccaccaac |
319 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49297066 |
cctgctggtgagattaaagccaaagagcaccagcttttttaagcattggaattaaggaacggttaagatgaagactcataacttgattggctccaccaac |
49296967 |
T |
|
| Q |
320 |
aagctcaccaccaatgaaaacagttggaacagatggagaagaaccaagtcttgaaataagtgcttgttcaatctctctccctcttggtatctcatcaagt |
419 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
49296966 |
aagctcaccaccaatgaaaacagttggaacagatggagaagaaccaagtcttgaaataagtgcttgttcaatctctctccctcttggtatctcatcaagt |
49296867 |
T |
|
| Q |
420 |
tcatatactgctggattcacaccaaagtcacaaaatagtgtctttattgtatgactcatgcaacatgaactcttgctgaatatcaccactggcctttctg |
519 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49296866 |
tcatatactgctggattcacaccaaagtcacaaaatagtgtctttattgtatgactcatgcaacatgaactcttgctgaatatcaccactggcctttctg |
49296767 |
T |
|
| Q |
520 |
aaaccatct |
528 |
Q |
| |
|
||||||||| |
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|
| T |
49296766 |
aaaccatct |
49296758 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 483; E-Value: 0
Query Start/End: Original strand, 23 - 528
Target Start/End: Complemental strand, 49290314 - 49289807
Alignment:
| Q |
23 |
acttgaatccacctgctgcacattattgcagcaaaggtagaagatccttgtccttaagtggcaccccaaatctatcaattaagttagactaattaattat |
122 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49290314 |
acttgaatccacctgctgcacattattgcagcaaaggtagaagatccttgtccttaagtggcaccccaaatctatcaattaagttagactaattaattat |
49290215 |
T |
|
| Q |
123 |
acctagtgccataatctctaagattaactcaacattgcctctctatataatatataaccaaaaaaggtcaacttattattattaagtagatttgtgtgag |
222 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
49290214 |
acctagtgccataatctctaagattaactcaacattgcctctctctata-tatataaccaaaaaaggtcaacttattattattaagtagatttgtgtgag |
49290116 |
T |
|
| Q |
223 |
cctg---gtgagattaaagccaaagagcaccagcttttttaagcattggaattaaggaacggttaagatgaagactcataacttgattggctccaccaac |
319 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
49290115 |
cctgctggtgagattaaagccaaagagcaccagcttttttaagcattggaattaaggaacggttaagatgaagactcataacttgattggctccaccaac |
49290016 |
T |
|
| Q |
320 |
aagctcaccaccaatgaaaacagttggaacagatggagaagaaccaagtcttgaaataagtgcttgttcaatctctctccctcttggtatctcatcaagt |
419 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
49290015 |
aagctcaccaccaatgaaaacagttggaacagatggagaagaaccaagtcttgaaataagtgcttgttcaatctctctccctcttggtatctcatcaagt |
49289916 |
T |
|
| Q |
420 |
tcatatactgctggattcacaccaaagtcacaaaatagtgtctttattgtatgactcatgcaacatgaactcttgctgaatatcaccactggcctttctg |
519 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
49289915 |
tcatatactgctggattcacaccaaagtcacaaaatagtgtctttattgtatgactcatgcaacatgaactcttgctgaatatcaccactggcctttctg |
49289816 |
T |
|
| Q |
520 |
aaaccatct |
528 |
Q |
| |
|
||||||||| |
|
|
| T |
49289815 |
aaaccatct |
49289807 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 301; E-Value: 1e-169
Query Start/End: Original strand, 228 - 528
Target Start/End: Complemental strand, 49303788 - 49303488
Alignment:
| Q |
228 |
tgagattaaagccaaagagcaccagcttttttaagcattggaattaaggaacggttaagatgaagactcataacttgattggctccaccaacaagctcac |
327 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
49303788 |
tgagattaaagccaaagagcaccagcttttttaagcattggaattaaggaacggttaagatgaagactcataacttgattggctccaccaacaagctcac |
49303689 |
T |
|
| Q |
328 |
caccaatgaaaacagttggaacagatggagaagaaccaagtcttgaaataagtgcttgttcaatctctctccctcttggtatctcatcaagttcatatac |
427 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
49303688 |
caccaatgaaaacagttggaacagatggagaagaaccaagtcttgaaataagtgcttgttcaatctctctccctcttggtatctcatcaagttcatatac |
49303589 |
T |
|
| Q |
428 |
tgctggattcacaccaaagtcacaaaatagtgtctttattgtatgactcatgcaacatgaactcttgctgaatatcaccactggcctttctgaaaccatc |
527 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
49303588 |
tgctggattcacaccaaagtcacaaaatagtgtctttattgtatgactcatgcaacatgaactcttgctgaatatcaccactggcctttctgaaaccatc |
49303489 |
T |
|
| Q |
528 |
t |
528 |
Q |
| |
|
| |
|
|
| T |
49303488 |
t |
49303488 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 65; Significance: 2e-28; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 282 - 520
Target Start/End: Original strand, 6567878 - 6568113
Alignment:
| Q |
282 |
ttaagatgaagactcataacttgattggctccaccaacaagctcaccaccaatgaaaacagttggaacagatggagaagaaccaagtcttgaaataagtg |
381 |
Q |
| |
|
||||| ||||| |||||||||| ||| ||||||||||||||||||||||||||||| |||| || ||||| || | | || || ||| ||| ||| |
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|
| T |
6567878 |
ttaaggtgaaggctcataacttcattagctccaccaacaagctcaccaccaatgaacacagcaggcacagaagggttacatcctagccttaaaa---gtg |
6567974 |
T |
|
| Q |
382 |
cttgttcaatctctctccctcttggtatctcatcaagttcatatactgctggattcacaccaaagtcacaaaatagtgtctttattgtatgactcatgca |
481 |
Q |
| |
|
|||||||||| |||||||||| |||||||||||||||| ||| |||||||||| |||||||||| || || || || ||||| |||| |||||| |
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|
| T |
6567975 |
cttgttcaatgtctctccctccactcatctcatcaagttcatgaacttctggattcactccaaagtcactgaagagggttttgattgtgtgacacatgca |
6568074 |
T |
|
| Q |
482 |
acatgaactcttgctgaatatcaccactggcctttctga |
520 |
Q |
| |
|
||| ||||||||||||||||||||||| ||| ||||| |
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|
| T |
6568075 |
acaactactcttgctgaatatcaccactgacctctctga |
6568113 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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