View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11721_high_28 (Length: 502)
Name: NF11721_high_28
Description: NF11721
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11721_high_28 |
 | |
|
| [»] scaffold0008 (1 HSPs) |
| | |
|
Alignment Details
Target: chr2 (Bit Score: 199; Significance: 1e-108; HSPs: 6)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 272 - 486
Target Start/End: Original strand, 29448275 - 29448489
Alignment:
| Q |
272 |
tatatattagaaattatgtcaatttattattaaaatggttgttatttttcataaatatctattatttatgaaatccttaacatatgtcataaggacacat |
371 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||| |
|
|
| T |
29448275 |
tatatattagaaattatgtctatttattattaaaatggttgttatttttcataaatatctattatttataaaatccttaacatatgtcatgaggacacat |
29448374 |
T |
|
| Q |
372 |
taacatgaccctatcaaattaaaaaactctaataataatattagagcaactttgacttgaaatttagattaatatgaccgatcaagccacatgtctatgg |
471 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29448375 |
taacatgaccctattaaattaaaaaactctaataataatattagagcaactttgacttgaaatttagattaatatgaccgatcaagccacatgtctatgg |
29448474 |
T |
|
| Q |
472 |
gccatcccaaattaa |
486 |
Q |
| |
|
||||||||||||||| |
|
|
| T |
29448475 |
gccatcccaaattaa |
29448489 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 190 - 275
Target Start/End: Complemental strand, 30261216 - 30261131
Alignment:
| Q |
190 |
ccgaccgtcagaatttaacaaagatactataactagttaagtaccccataaccatataaaattaagttcaaatttataacagtata |
275 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
30261216 |
ccgaccgtcagaatttaacaaagatactataactagttaagtaccccataaccatataaaattaagttcaaatttataacaatata |
30261131 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 71; E-Value: 6e-32
Query Start/End: Original strand, 392 - 486
Target Start/End: Complemental strand, 30260201 - 30260107
Alignment:
| Q |
392 |
aaaaaactctaataataatattagagcaactttgacttgaaatttagattaatatgaccgatcaagccacatgtctatgggccatcccaaattaa |
486 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||| | |||| | ||||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
30260201 |
aaaaaactctaataataatattagagcaagtttgacttaagatttgggttaatatgaccgatcaagccacatgtctatgggccattccaaattaa |
30260107 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 190 - 275
Target Start/End: Original strand, 29447491 - 29447576
Alignment:
| Q |
190 |
ccgaccgtcagaatttaacaaagatactataactagttaagtaccccataaccatataaaattaagttcaaatttataacagtata |
275 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||| ||||| |||| |
|
|
| T |
29447491 |
ccgaccgtcagaatttaacaaagatattataactagttaagtaccccataatcatataaaattaagttcaaatttgtaacaatata |
29447576 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 13 - 67
Target Start/End: Complemental strand, 30261392 - 30261338
Alignment:
| Q |
13 |
caaaggggttcaccaaatgtatataatttcttttagccaactgtaactttactta |
67 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30261392 |
caaatgggttcaccaaatgtatataatttcttttagccaactgtaactttactta |
30261338 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 13 - 59
Target Start/End: Original strand, 29446852 - 29446898
Alignment:
| Q |
13 |
caaaggggttcaccaaatgtatataatttcttttagccaactgtaac |
59 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29446852 |
caaatgggttcaccaaatgtatataatttcttttagccaactgtaac |
29446898 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0008 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: scaffold0008
Description:
Target: scaffold0008; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 322 - 370
Target Start/End: Original strand, 240673 - 240721
Alignment:
| Q |
322 |
ataaatatctattatttatgaaatccttaacatatgtcataaggacaca |
370 |
Q |
| |
|
|||||||| ||| ||||||| |||||||||||| |||||||||| |||| |
|
|
| T |
240673 |
ataaatatttatcatttatggaatccttaacatgtgtcataagggcaca |
240721 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University