View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11721_high_36 (Length: 430)
Name: NF11721_high_36
Description: NF11721
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11721_high_36 |
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Alignment Details
Target: chr2 (Bit Score: 384; Significance: 0; HSPs: 5)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 384; E-Value: 0
Query Start/End: Original strand, 1 - 420
Target Start/End: Original strand, 36760257 - 36760676
Alignment:
| Q |
1 |
ttgaaagaaaaggtggacatggtgaagaagattcgttgttttcctcctccacttccttcactttttagtcaaagccaaccacttcaaatgacaccccaac |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36760257 |
ttgaaagaaaaggtggacatggtgaagaagattcgttgttttcctcctccacttccttcactttttagtcaaagccaaccacttcaaatgacaccccaac |
36760356 |
T |
|
| Q |
101 |
gtgacaatggaaggttgtttttgttcctacaagttgtgtcagttccttcacataataacttcttcaccaagcgacaaaatggtcgtcttgtcctctcgtt |
200 |
Q |
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|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36760357 |
gtgacaatggaaggctgtttttgttcctacaagttgtgtcagttccttcacataataacttcttcaccaagcgacaaaatggtcgtcttgtcctctcgtt |
36760456 |
T |
|
| Q |
201 |
attaaacgatgaagaagaaattgatgatgagtttgaggaagatgagagtatgatagagaaaacacatatgttgtctagtgagataacaagtattcctaat |
300 |
Q |
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| T |
36760457 |
taataatgatgaagaagaaattgatgatgagtttgaggaagatgagagtgtgatagagaaaacacatatgttgtctagtgagataacaaatatttctaat |
36760556 |
T |
|
| Q |
301 |
ttagaattagctgtgaataagtcaatttggttggttaacaaaagaccaaaatgttcaaagttcaaccaagtgttcaattttgaggatgttaaggttgtgc |
400 |
Q |
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| T |
36760557 |
ttagaattagctgtgaataagtcaatttggttggttaacaaaagaccaaaatgttcaaagttcaaccaagtgttcaattttgaggatgttaaggttgtgc |
36760656 |
T |
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| Q |
401 |
aacatggttcattgcctatg |
420 |
Q |
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| T |
36760657 |
aacatggttcattgcctatg |
36760676 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 184; E-Value: 2e-99
Query Start/End: Original strand, 1 - 411
Target Start/End: Original strand, 36788253 - 36788669
Alignment:
| Q |
1 |
ttgaaagaaaaggtggacatggtgaagaagattcgttgttttcctcctccacttccttcactttttagtcaaagccaaccacttcaaatgacaccccaac |
100 |
Q |
| |
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||||||||||||| ||||||||||||||| ||||||| ||||||||||||||||||||| |||||||| ||||||||||||||||||| |||| | |
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| T |
36788253 |
ttgaaagaaaaggcggacatggtgaagaaaccacgttgttatcctcctccacttccttcactctttagtcatagccaaccacttcaaatgatgccccgcc |
36788352 |
T |
|
| Q |
101 |
gtgacaatggaaggttgtttttgttcctacaagttgtgtcagttccttcacataataacttcttcaccaagcgacaaaatggtcgtcttgtcctctcg-t |
199 |
Q |
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|||||||||||||||||| |||||||||||||||||||||| ||||||||| |||||| |||||| | ||||||||||||||||| ||| ||||| || | |
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| T |
36788353 |
gtgacaatggaaggttgtctttgttcctacaagttgtgtcaattccttcacctaataaattcttcgctaagcgacaaaatggtcgccttatcctcacgtt |
36788452 |
T |
|
| Q |
200 |
tatta--aacgatgaagaagaaattgatgatgagtttgaggaagatgagagtatgatagagaaaacacatatgttgtctagtgagataacaagtattcct |
297 |
Q |
| |
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| || || |||||||||||||||||||| || |||||||||||| ||||| ||||||||||||| || || ||||||||||| || |||| | ||| | |
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| T |
36788453 |
tgctactaatgatgaagaagaaattgatgaggactttgaggaagataagagtgtgatagagaaaacgcaaattttgtctagtgaaattacaaatgttcat |
36788552 |
T |
|
| Q |
298 |
aatttagaatta---gctgtgaataagtcaatttggttggttaacaaaagaccaaaatgttcaaagttcaaccaagtgttcaattttgaggatgttaagg |
394 |
Q |
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| ||| |||||| | ||||||||| ||||| |||| |||||||| ||||||||| ||||||||||||||||||||| ||||||||| |||| ||| |
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| T |
36788553 |
agtttggaattaacgtcggtgaataagacaattgggttagttaacaagagaccaaaacgttcaaagttcaaccaagtgtccaattttgatgatggtaata |
36788652 |
T |
|
| Q |
395 |
ttgtgcaacatggttca |
411 |
Q |
| |
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||||||||||||||||| |
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| T |
36788653 |
ttgtgcaacatggttca |
36788669 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 1 - 185
Target Start/End: Original strand, 36775574 - 36775758
Alignment:
| Q |
1 |
ttgaaagaaaaggtggacatggtgaagaagattcgttgttttcctcctccacttccttcactttttagtcaaagccaaccacttcaaatgacaccccaac |
100 |
Q |
| |
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||||||||||||||| ||||||||||||| ||||||||||||||||||||||||| ||| ||||||||||| |||||||| |||||| ||||| | |
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| T |
36775574 |
ttgaaagaaaaggtgaacatggtgaagaaaccacgttgttttcctcctccacttcctttactctttagtcaaagtcaaccactcaaaatgaggccccacc |
36775673 |
T |
|
| Q |
101 |
gtgacaatggaaggttgtttttgttcctacaagttgtgtcagttccttcacataataacttcttcaccaagcgacaaaatggtcg |
185 |
Q |
| |
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||||||||||||| ||||||||||||||| |||| ||||| ||||| |||||||| |||||||| | ||||||||||||||||| |
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| T |
36775674 |
gtgacaatggaagattgtttttgttcctagaagtagtgtcggttccatcacataacaacttcttggctaagcgacaaaatggtcg |
36775758 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 100 - 266
Target Start/End: Original strand, 36796753 - 36796925
Alignment:
| Q |
100 |
cgtgacaatggaaggttgtttttgttcctacaagttgtgtcagttccttcacataataacttcttcaccaagcgacaaaatggtcgtcttgtcctctcgt |
199 |
Q |
| |
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||||||||||||||||| ||||||||||||||||||| ||||||||||| || |||||||| | ||||||||||||||||| ||| ||||| ||| |
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| T |
36796753 |
cgtgacaatggaaggtt---tttgttcctacaagttgtgcaggttccttcacacaactacttcttcgctaagcgacaaaatggtcgccttatcctcacgt |
36796849 |
T |
|
| Q |
200 |
t-----attaa-acgatga---agaagaaattgatgatgagtttgaggaagatgagagtatgatagagaaaacaca |
266 |
Q |
| |
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| || || | || || |||| ||||||| ||||||||| |||||||||||||| |||||||||| ||||| |
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| T |
36796850 |
ttaatgatgaagaagaagacagagaataaattgacgatgagtttaaggaagatgagagtgtgatagagaagacaca |
36796925 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 300 - 416
Target Start/End: Original strand, 36796935 - 36797054
Alignment:
| Q |
300 |
tttagaattagctgtgaataagtcaatttggttggttaacaaaagaccaaaatgttca---aagttcaaccaagtgttcaattttgaggatgttaaggtt |
396 |
Q |
| |
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||||||||||| ||||||||| ||||| | || ||||||| || |||||||| || ||||||||| | ||| | ||||||||||||||||||||| |
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| T |
36796935 |
tttagaattagtggtgaataaggcaattggattatttaacaagagtccaaaatggtcggagaagttcaacaaggtgattaattttgaggatgttaaggtt |
36797034 |
T |
|
| Q |
397 |
gtgcaacatggttcattgcc |
416 |
Q |
| |
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|| ||||||||||||||||| |
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| T |
36797035 |
gttcaacatggttcattgcc |
36797054 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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