View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11721_high_42 (Length: 388)
Name: NF11721_high_42
Description: NF11721
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11721_high_42 |
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Alignment Details
Target: chr5 (Bit Score: 285; Significance: 1e-160; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 285; E-Value: 1e-160
Query Start/End: Original strand, 17 - 345
Target Start/End: Complemental strand, 38750738 - 38750409
Alignment:
| Q |
17 |
gaaacacagataaaatagtgattaacaacaatcatannnnnnn-ctcaaccatttccttcaattccataattgggaaattttctttgctacttattcttc |
115 |
Q |
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| T |
38750738 |
gaaacacagataaaatagtgattaacaacaatcatattttttttctcaaccatttccttcaattccataattgggaaattttctttgctacttattcttc |
38750639 |
T |
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| Q |
116 |
aaagaactttcaagtaactactggaagcaacactaagagttgtatacttattgtaactcaataatttgattataaaacataaataacagtattagtgtct |
215 |
Q |
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| T |
38750638 |
aaagaactttcaagtaactactggaagcaacactaagagttgtatacttattgtaactcaataatttgattataaaacataaataacagtattagtgtct |
38750539 |
T |
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| Q |
216 |
cccaaataatgcttcacaatatgattatttaaattattgatgcatataactttgaacttgttatgtttctctgatcagagcagctacatgttctcttacc |
315 |
Q |
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| T |
38750538 |
cccaaataatgcttcacaaattgattatttaaattattgatgcatagaactttgaacttgttatgtttctctgatcagagcagctacatgttctcttacc |
38750439 |
T |
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| Q |
316 |
cttattcgacaaagttgcaaaaagttctac |
345 |
Q |
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| T |
38750438 |
cttattcgacaaagttgcaaatagttctac |
38750409 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 114; Significance: 1e-57; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 114; E-Value: 1e-57
Query Start/End: Original strand, 92 - 373
Target Start/End: Original strand, 3021739 - 3022027
Alignment:
| Q |
92 |
aattttctttgctacttattcttcaaagaactttcaagtaactactggaa-------gcaacactaagagttgtatacttattgtaactcaataatttga |
184 |
Q |
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| T |
3021739 |
aattttcttggctacttaatcttcaaagaactttcaagtaactactggaaaaatgaagcaatactaaggatggtatacttgttgtatcccaataatttgt |
3021838 |
T |
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| Q |
185 |
ttataaaacataaataacagtatta---gtgtctcccaa-ataatgcttcacaatatgattatttaaattattgatgcatataactttgaacttgtt-at |
279 |
Q |
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| T |
3021839 |
ttataaaacataaataacagtattaatagtgtctcacaatataatgtttcacaaattcattatttaaattattgatacatagaaatttgaacttgtttat |
3021938 |
T |
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| Q |
280 |
gtttctctgatcagagcagctacatgttctcttacccttattcgacaaagttgcaaaaagttctactggattggagatgcgtagacaaactttt |
373 |
Q |
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| T |
3021939 |
atttctcttatcagaatagctacatgttctcttacccttcttcaacaaagttgcaaatagttctactgga-----gatgcttagacaaactttt |
3022027 |
T |
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