View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11721_high_43 (Length: 380)
Name: NF11721_high_43
Description: NF11721
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11721_high_43 |
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Alignment Details
Target: chr2 (Bit Score: 316; Significance: 1e-178; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 316; E-Value: 1e-178
Query Start/End: Original strand, 19 - 372
Target Start/End: Original strand, 4635784 - 4636134
Alignment:
| Q |
19 |
aatcaatgcaatcacttcagcaatcaatgtaagattatagtattatatgaagcaatatctgtctgcattactattattcgaatttcaactttccaagcat |
118 |
Q |
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| T |
4635784 |
aatcagtgcaatcacttcagcaatcaatgtaagattata---ttatatgaagcaatatctgtctgcattactattattcgaatttcaactttccaagcat |
4635880 |
T |
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| Q |
119 |
acttaattttctattttatgtcttcacaggagttgattgatctaggtgcacgcacgctcatgatccctgggaatttcccattgggatgcagtgtaattta |
218 |
Q |
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| T |
4635881 |
acttaattttctattttatgtcttcacaggagttgattgatctaggtgcacgcacgctcatgatccctgggaatttcccattgggatgcaatgtaattta |
4635980 |
T |
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| Q |
219 |
tttaacaaaatatgaaactacagataagagccaatacgactcagctggttgcttgaagtggttaaacgaatttgctgaattttataatcaggagctccaa |
318 |
Q |
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| T |
4635981 |
cttaacaaaatatgaaactacagataagagccaatatgactcagctggttgcttgaagtggttaaacgaatttgctgaattttataatcaggagctccaa |
4636080 |
T |
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| Q |
319 |
tatgagttacataggctaagaagaattcatcctcatgctactatcatctctgct |
372 |
Q |
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| T |
4636081 |
tatgagttacataggctaagaagaattcatcctcatgctactataatctatgct |
4636134 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 120; E-Value: 3e-61
Query Start/End: Original strand, 125 - 372
Target Start/End: Original strand, 4659044 - 4659291
Alignment:
| Q |
125 |
ttttctattttatgtcttcacaggagttgattgatctaggtgcacgcacgctcatgatccctgggaatttcccattgggatgcagtgtaatttatttaac |
224 |
Q |
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| T |
4659044 |
ttttgtattttatgtcttcgcaggagttgattgatctaggggcacgcacgcttatggtccctggaaatttcccattgggatgtagtgcagtccatttaac |
4659143 |
T |
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| Q |
225 |
aaaatatgaaactacagataagagccaatacgactcagctggttgcttgaagtggttaaacgaatttgctgaattttataatcaggagctccaatatgag |
324 |
Q |
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|| |||||||| || ||||||| |||||| |||||| ||||||||||||||||||||| |||||| ||||||||||||| ||| | |||||| ||||| |
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| T |
4659144 |
aacgtatgaaaccacggataagaaccaatatgactcatttggttgcttgaagtggttaaatgaattttctgaattttataaccagaaactccaacatgag |
4659243 |
T |
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| Q |
325 |
ttacataggctaagaagaattcatcctcatgctactatcatctctgct |
372 |
Q |
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|||||||||| || ||||||||||||||||| |||||||| |||| |
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| T |
4659244 |
atacataggcttcgagtaattcatcctcatgctaatatcatctatgct |
4659291 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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