View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11721_high_44 (Length: 369)

Name: NF11721_high_44
Description: NF11721
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11721_high_44
NF11721_high_44
[»] chr3 (2 HSPs)
chr3 (19-215)||(35775739-35775935)
chr3 (282-359)||(35775595-35775672)
[»] chr1 (4 HSPs)
chr1 (284-362)||(16426366-16426444)
chr1 (284-336)||(3387615-3387667)
chr1 (285-326)||(30883156-30883197)
chr1 (282-338)||(35677736-35677792)
[»] chr5 (2 HSPs)
chr5 (284-347)||(4111966-4112029)
chr5 (305-348)||(41815783-41815826)
[»] scaffold0012 (1 HSPs)
scaffold0012 (284-336)||(209151-209203)
[»] chr4 (1 HSPs)
chr4 (282-326)||(35530033-35530077)
[»] chr2 (6 HSPs)
chr2 (284-336)||(41848979-41849031)
chr2 (282-345)||(16661325-16661388)
chr2 (284-336)||(38783760-38783812)
chr2 (284-349)||(17651206-17651271)
chr2 (315-356)||(44650139-44650180)
chr2 (76-120)||(26576433-26576477)
[»] chr8 (4 HSPs)
chr8 (284-335)||(13097405-13097456)
chr8 (284-336)||(28869811-28869863)
chr8 (287-336)||(28867248-28867297)
chr8 (284-336)||(18393701-18393753)
[»] chr7 (2 HSPs)
chr7 (287-349)||(9730060-9730122)
chr7 (285-326)||(43837341-43837382)
[»] chr6 (1 HSPs)
chr6 (284-336)||(2602050-2602102)
[»] scaffold0891 (1 HSPs)
scaffold0891 (282-341)||(2433-2491)
[»] scaffold1723 (1 HSPs)
scaffold1723 (287-336)||(489-538)


Alignment Details
Target: chr3 (Bit Score: 189; Significance: 1e-102; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 19 - 215
Target Start/End: Complemental strand, 35775935 - 35775739
Alignment:
Q  19 ggaattattcccttcaaaggtaagttagtatctctttctgattgttttctgcatatatatgaagcacggacacatctatgactagacttgttgcggtgtc 118  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35775935 ggaattattcccttcaaaggtaagttagtatctctttctgattgttttctgcatatatatgaagcacggacacatctatgactagacttgttgcggtgtc 35775836  T
Q  119 cgcaacttgtatgacactccttcgacacatctcatatatatctgtaagagtcaaagatgagtttagaagtaaaatccaatgattacaacattttagc 215  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  35775835 cgcaacctgtatgacactccttcgacacatctcatatatatctgtaagagtcaaagatgtgtttagaagtaaaatccaatgattacaacattttagc 35775739  T

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Target: chr3; HSP #2
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 282 - 359
Target Start/End: Complemental strand, 35775672 - 35775595
Alignment:
Q  282 acatgtatgtattttgatactcgatttagatcttttataaataatttaatatatatgcagcggtgtcaatgtcctttg 359  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  35775672 acatgtatgtattttgatactcgatttagatcttttataaataatttaatatatatgcagtggtgtcaatgtcctttg 35775595  T

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Target: chr1 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 284 - 362
Target Start/End: Complemental strand, 16426444 - 16426366
Alignment:
Q  284 atgtatgtattttgatactcgatttagatcttttataaataatttaatatatatgcagcggtgtcaatgtcctttgctt 362  Q
    |||||||||||||||| ||  ||||| ||||||||||||||| |||||||||| | |||||||||| |||||| |||||    
T  16426444 atgtatgtattttgattcttaatttatatcttttataaataaattaatatataggtagcggtgtcagtgtcctatgctt 16426366  T

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Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 284 - 336
Target Start/End: Complemental strand, 3387667 - 3387615
Alignment:
Q  284 atgtatgtattttgatactcgatttagatcttttataaataatttaatatata 336  Q
    |||||||||||||||| ||| |||||||| |||||||||||| ||||||||||    
T  3387667 atgtatgtattttgattctcaatttagatattttataaataaattaatatata 3387615  T

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Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 285 - 326
Target Start/End: Original strand, 30883156 - 30883197
Alignment:
Q  285 tgtatgtattttgatactcgatttagatcttttataaataat 326  Q
    ||||| ||||||||| ||||||||||||||||||| ||||||    
T  30883156 tgtatatattttgattctcgatttagatcttttatcaataat 30883197  T

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Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 282 - 338
Target Start/End: Complemental strand, 35677792 - 35677736
Alignment:
Q  282 acatgtatgtattttgatactcgatttagatcttttataaataatttaatatatatg 338  Q
    |||||||| ||||||||| ||| ||| |||| |||||| ||||| ||||||||||||    
T  35677792 acatgtatatattttgattctcaattcagattttttatgaataaattaatatatatg 35677736  T

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Target: chr5 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 284 - 347
Target Start/End: Complemental strand, 4112029 - 4111966
Alignment:
Q  284 atgtatgtattttgatactcgatttagatcttttataaataatttaatatatatgcagcggtgt 347  Q
    |||||||||||||||| ||| |||||||||||||||| |||| |||||||||| | ||||||||    
T  4112029 atgtatgtattttgattctcaatttagatcttttatatataaattaatatataagtagcggtgt 4111966  T

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Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 305 - 348
Target Start/End: Original strand, 41815783 - 41815826
Alignment:
Q  305 atttagatcttttataaataatttaatatatatgcagcggtgtc 348  Q
    |||| |||||||||||||||| |||||||||||| |||||||||    
T  41815783 atttggatcttttataaataaattaatatatatgtagcggtgtc 41815826  T

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Target: scaffold0012 (Bit Score: 37; Significance: 0.000000000009; HSPs: 1)
Name: scaffold0012
Description:

Target: scaffold0012; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 284 - 336
Target Start/End: Complemental strand, 209203 - 209151
Alignment:
Q  284 atgtatgtattttgatactcgatttagatcttttataaataatttaatatata 336  Q
    |||||||||||||||| ||| |||||||| |||||||||||| ||||||||||    
T  209203 atgtatgtattttgattctcaatttagatattttataaataaattaatatata 209151  T

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Target: chr4 (Bit Score: 37; Significance: 0.000000000009; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 282 - 326
Target Start/End: Complemental strand, 35530077 - 35530033
Alignment:
Q  282 acatgtatgtattttgatactcgatttagatcttttataaataat 326  Q
    |||||||| ||||||||| ||||||||||||||||||||||||||    
T  35530077 acatgtatatattttgattctcgatttagatcttttataaataat 35530033  T

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Target: chr2 (Bit Score: 37; Significance: 0.000000000009; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 284 - 336
Target Start/End: Complemental strand, 41849031 - 41848979
Alignment:
Q  284 atgtatgtattttgatactcgatttagatcttttataaataatttaatatata 336  Q
    |||||||||||||||| ||| |||||||| |||||||||||| ||||||||||    
T  41849031 atgtatgtattttgattctcaatttagatattttataaataaattaatatata 41848979  T

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Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 282 - 345
Target Start/End: Original strand, 16661325 - 16661388
Alignment:
Q  282 acatgtatgtattttgatactcgatttagatcttttataaataatttaatatatatgcagcggt 345  Q
    ||||||||||||| |||| ||| |||||||||||||||| || | |||||||||||| ||||||    
T  16661325 acatgtatgtattctgattctcaatttagatcttttatacatgaattaatatatatgtagcggt 16661388  T

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Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 284 - 336
Target Start/End: Original strand, 38783760 - 38783812
Alignment:
Q  284 atgtatgtattttgatactcgatttagatcttttataaataatttaatatata 336  Q
    |||||||||||||||| ||| ||| |||| |||||||||||| ||||||||||    
T  38783760 atgtatgtattttgattctcaattcagatattttataaataaattaatatata 38783812  T

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Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 284 - 349
Target Start/End: Complemental strand, 17651271 - 17651206
Alignment:
Q  284 atgtatgtattttgatactcgatttagatcttttataaataatttaatatatatgcagcggtgtca 349  Q
    |||||||||||||| |  |  ||||||||||| ||||||||| ||||||||||  |||||||||||    
T  17651271 atgtatgtattttggtttttaatttagatcttatataaataaattaatatatagccagcggtgtca 17651206  T

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Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 315 - 356
Target Start/End: Original strand, 44650139 - 44650180
Alignment:
Q  315 tttataaataatttaatatatatgcagcggtgtcaatgtcct 356  Q
    ||||||||||| |||||||||||| ||| |||||||||||||    
T  44650139 tttataaataaattaatatatatgtagcagtgtcaatgtcct 44650180  T

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Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 76 - 120
Target Start/End: Complemental strand, 26576477 - 26576433
Alignment:
Q  76 tatgaagcacggacacatctatgactagacttgttgcggtgtccg 120  Q
    |||||||||||||||| |||| |||||||| ||| ||||||||||    
T  26576477 tatgaagcacggacacctctaggactagacgtgtcgcggtgtccg 26576433  T

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Target: chr8 (Bit Score: 36; Significance: 0.00000000003; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 284 - 335
Target Start/End: Complemental strand, 13097456 - 13097405
Alignment:
Q  284 atgtatgtattttgatactcgatttagatcttttataaataatttaatatat 335  Q
    |||||||||||||||| ||| |||||||| |||||||||||| |||||||||    
T  13097456 atgtatgtattttgattctcaatttagatattttataaataaattaatatat 13097405  T

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Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 284 - 336
Target Start/End: Complemental strand, 28869863 - 28869811
Alignment:
Q  284 atgtatgtattttgatactcgatttagatcttttataaataatttaatatata 336  Q
    |||||||||||||||| ||| ||||| || |||||||||||| ||||||||||    
T  28869863 atgtatgtattttgattctcaatttaaatattttataaataaattaatatata 28869811  T

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Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 287 - 336
Target Start/End: Complemental strand, 28867297 - 28867248
Alignment:
Q  287 tatgtattttgatactcgatttagatcttttataaataatttaatatata 336  Q
    ||||||||||||| ||| ||||| || |||||||||||| ||||||||||    
T  28867297 tatgtattttgattctcaatttaaatgttttataaataaattaatatata 28867248  T

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Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 284 - 336
Target Start/End: Original strand, 18393701 - 18393753
Alignment:
Q  284 atgtatgtattttgatactcgatttagatcttttataaataatttaatatata 336  Q
    ||||||||||| |||| ||| |||||||| |||||||| ||| ||||||||||    
T  18393701 atgtatgtattatgattctcaatttagatattttataagtaaattaatatata 18393753  T

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Target: chr7 (Bit Score: 35; Significance: 0.0000000001; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 287 - 349
Target Start/End: Original strand, 9730060 - 9730122
Alignment:
Q  287 tatgtattttgatactcgatttagatcttttataaataatttaatatatatgcagcggtgtca 349  Q
    ||||||||||| | ||  ||||||||||||||||||||| |||||||||| | ||||||||||    
T  9730060 tatgtattttggttcttaatttagatcttttataaataaattaatatataggtagcggtgtca 9730122  T

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Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 285 - 326
Target Start/End: Original strand, 43837341 - 43837382
Alignment:
Q  285 tgtatgtattttgatactcgatttagatcttttataaataat 326  Q
    ||||| ||||||||| ||| ||||||||||||||||||||||    
T  43837341 tgtatatattttgattctcaatttagatcttttataaataat 43837382  T

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Target: chr6 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 284 - 336
Target Start/End: Complemental strand, 2602102 - 2602050
Alignment:
Q  284 atgtatgtattttgatactcgatttagatcttttataaataatttaatatata 336  Q
    |||| ||||||||||| ||  ||||||||||||||||||||| ||||||||||    
T  2602102 atgtttgtattttgattcttaatttagatcttttataaataaattaatatata 2602050  T

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Target: scaffold0891 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: scaffold0891
Description:

Target: scaffold0891; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 282 - 341
Target Start/End: Original strand, 2433 - 2491
Alignment:
Q  282 acatgtatgtattttgatactcgatttagatcttttataaataatttaatatatatgcag 341  Q
    ||||||| ||||||||||| || |||||||||| |||| ||||| |||||||||||||||    
T  2433 acatgtacgtattttgataatcaatttagatctcttat-aataaattaatatatatgcag 2491  T

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Target: scaffold1723 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold1723
Description:

Target: scaffold1723; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 287 - 336
Target Start/End: Original strand, 489 - 538
Alignment:
Q  287 tatgtattttgatactcgatttagatcttttataaataatttaatatata 336  Q
    ||||||||||||| ||  ||| ||||||||||||||||| ||||||||||    
T  489 tatgtattttgattcttaattaagatcttttataaataaattaatatata 538  T

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