View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11721_high_50 (Length: 345)
Name: NF11721_high_50
Description: NF11721
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11721_high_50 |
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Alignment Details
Target: chr4 (Bit Score: 278; Significance: 1e-155; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 278; E-Value: 1e-155
Query Start/End: Original strand, 1 - 317
Target Start/End: Original strand, 55337145 - 55337457
Alignment:
| Q |
1 |
aaagaagaagttgaggtgtgcatggaagccatgaaaatgaaatgattgtacgtatgttaattatgttttgctttgtgtttagtgttagtgaggaaaggtt |
100 |
Q |
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| T |
55337145 |
aaagaagaagttgaggtgtgcatggaagccatgaaaatgaaatgattgtacgtatgttaattatgttttgatttgtgtttagtgttagtgaggaaaggtt |
55337244 |
T |
|
| Q |
101 |
tatatatatactatactattgtgacagggaggatgagtgcaacttgtaatgttatagttttattcaattttttaagacaa-gagttatgggaggtattaa |
199 |
Q |
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|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||| |
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| T |
55337245 |
tatatatatactat-----tgtgacagggaggatgagtgcaacttgtaatgttatagttttattcaattttttagtacaaagagttatgggaggtattaa |
55337339 |
T |
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| Q |
200 |
acaaataggttcttagatacctatggaccaaatgtaggaatatttgtatacacacaataaaataacatgtttttagtattaaaaaatgaagctaatgagt |
299 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
55337340 |
acaaataggttcttagatacctatggaccaaatgtaggaatatttgtatacacacaataaaataacatgtttttagtattaaaaaatgaagctaatgagt |
55337439 |
T |
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| Q |
300 |
tcatgtcatgtgaaatta |
317 |
Q |
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|||||||||||||||||| |
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| T |
55337440 |
tcatgtcatgtgaaatta |
55337457 |
T |
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