View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11721_high_52 (Length: 340)
Name: NF11721_high_52
Description: NF11721
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11721_high_52 |
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Alignment Details
Target: chr8 (Bit Score: 280; Significance: 1e-157; HSPs: 7)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 280; E-Value: 1e-157
Query Start/End: Original strand, 1 - 288
Target Start/End: Original strand, 6365444 - 6365731
Alignment:
| Q |
1 |
acaccacagttcccttcaccttttggtgcttatcaaagagacctttcaccaatgaactcatctttaatgcttaaatgtattacactatctttggtaaatg |
100 |
Q |
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| T |
6365444 |
acaccacagttcccttcaccttttggtgcttatcaaagagacctttcaccaatgaactcatctttaatgcttaaatgtattacactatctttggtaaatg |
6365543 |
T |
|
| Q |
101 |
aaagaaaagcttgtgttttgttaccaaggggatgcttagtatttatagtagttgataggtgcaaggttagttcaaaagaaataattgtttattgttcatt |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6365544 |
aaagaaaagcttgtgttttgttaccaaggggatgcttagtatttatagtagttgataggtgcaaggttagttcaaaagaaataattgtttattgttcatt |
6365643 |
T |
|
| Q |
201 |
attatatgttttttacataattaatttactaaataacaacacgtttaaatgaagatgggtaatataagctggctcattacataaataa |
288 |
Q |
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| T |
6365644 |
attatatgttttttacataattaatttactaaataacaacacatttaaatgaagatgggtaatataagctggcacattacataaataa |
6365731 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 50 - 156
Target Start/End: Original strand, 6393072 - 6393178
Alignment:
| Q |
50 |
caatgaactcatctttaatgcttaaatgtattacactatctttggtaaatgaaagaaaagcttgtgttttgttaccaaggggatgcttagtatttatagt |
149 |
Q |
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||||||| |||||||| |||||||||||||||||||||||||||| ||||||||||| | |||||| |||| |||| |||||||||| ||||||||| | |
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| T |
6393072 |
caatgaagtcatctttgatgcttaaatgtattacactatctttggctaatgaaagaaatgtttgtgtcttgtaaccatggggatgcttggtatttatact |
6393171 |
T |
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| Q |
150 |
agttgat |
156 |
Q |
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| T |
6393172 |
acttgat |
6393178 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 50 - 156
Target Start/End: Original strand, 6412212 - 6412319
Alignment:
| Q |
50 |
caatgaactcatctttaatgcttaaatgtattacactatctttggtaaatgaaagaaaagcttgtgttttgttaccaag-gggatgcttagtatttatag |
148 |
Q |
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||||||| |||||||| |||||||||||||||||||||||||||| ||||||||||| | |||||| |||| ||| | |||||||||||||||||||| |
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| T |
6412212 |
caatgaagtcatctttgatgcttaaatgtattacactatctttggctaatgaaagaaatgtttgtgtcttgtaaccttgtgggatgcttagtatttatag |
6412311 |
T |
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| Q |
149 |
tagttgat |
156 |
Q |
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|| ||||| |
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| T |
6412312 |
tacttgat |
6412319 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 51 - 156
Target Start/End: Original strand, 6373157 - 6373263
Alignment:
| Q |
51 |
aatgaactcatctttaatgcttaaatgtattacactatctttggtaaatgaaagaaaagcttgtgttttgttacca-aggggatgcttagtatttatagt |
149 |
Q |
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|||||| |||||||| ||||||||||||||||||||||||||| |||||||||||| | |||||| |||| |||| ||||||||||| |||||||||| |
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| T |
6373157 |
aatgaagtcatctttgatgcttaaatgtattacactatctttgtcaaatgaaagaaatgtttgtgtcttgtaaccattggggatgcttactatttatagt |
6373256 |
T |
|
| Q |
150 |
agttgat |
156 |
Q |
| |
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| ||||| |
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| T |
6373257 |
acttgat |
6373263 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 71 - 156
Target Start/End: Original strand, 6356084 - 6356169
Alignment:
| Q |
71 |
ttaaatgtattacactatctttggtaaatgaaagaaaagcttgtgttttgttaccaaggggatgcttagtatttatagtagttgat |
156 |
Q |
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| T |
6356084 |
ttaaatgtattacactatatatggtaaatgaaagaaaggcttgtgtcttgtaaccataggggtggttagtatttatagtagttgat |
6356169 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 71 - 155
Target Start/End: Original strand, 7463185 - 7463269
Alignment:
| Q |
71 |
ttaaatgtattacactatctttggtaaatgaaagaaaagcttgtgttttgttaccaaggggatgcttagtatttatagtagttga |
155 |
Q |
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|||||| ||||||||||| |||||||||||||||||| || ||||| |||| |||| |||| |||||||||| |||||||||||| |
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| T |
7463185 |
ttaaatatattacactatatttggtaaatgaaagaaatgcctgtgtcttgtaaccatgggggtgcttagtatctatagtagttga |
7463269 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 67 - 116
Target Start/End: Original strand, 6373607 - 6373656
Alignment:
| Q |
67 |
atgcttaaatgtattacactatctttggtaaatgaaagaaaagcttgtgt |
116 |
Q |
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||||||||| |||||||| ||||||||| |||||||||||||||||||| |
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| T |
6373607 |
atgcttaaacgtattacaatatctttggctaatgaaagaaaagcttgtgt |
6373656 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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