View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11721_high_53 (Length: 340)
Name: NF11721_high_53
Description: NF11721
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11721_high_53 |
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Alignment Details
Target: chr8 (Bit Score: 114; Significance: 9e-58; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 114; E-Value: 9e-58
Query Start/End: Original strand, 176 - 333
Target Start/End: Original strand, 12190240 - 12190397
Alignment:
| Q |
176 |
aatttgcaaaagtagaagcaaagaaaatacctatatgtacttgaatcgaagccagataaattagctacttcaaagagagccttcttccacctttgaatct |
275 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||| ||||||||||||||||||| |
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| T |
12190240 |
aatttgcaaaagtagaagcaaagaaaatacctatatgtacttgaatcaaagccagataaattggctacttcaaagagagcattcttccacctttgaatct |
12190339 |
T |
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| Q |
276 |
tatctttgccttgnnnnnnnngtttcgccaacgccgtgtcgtaactccctctctgctt |
333 |
Q |
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| T |
12190340 |
tatctttgccttgtttcttttgtttcgccaacgccgtgtggtaactccctgtctgctt |
12190397 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 114; E-Value: 9e-58
Query Start/End: Original strand, 176 - 333
Target Start/End: Original strand, 12434668 - 12434825
Alignment:
| Q |
176 |
aatttgcaaaagtagaagcaaagaaaatacctatatgtacttgaatcgaagccagataaattagctacttcaaagagagccttcttccacctttgaatct |
275 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||| ||||||||||||||||||| |
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| T |
12434668 |
aatttgcaaaagtagaagcaaagaaaatacctatatgtacttgaatcaaagccagataaattggctacttcaaagagagcattcttccacctttgaatct |
12434767 |
T |
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| Q |
276 |
tatctttgccttgnnnnnnnngtttcgccaacgccgtgtcgtaactccctctctgctt |
333 |
Q |
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| T |
12434768 |
tatctttgccttgtttcttttgtttcgccaacgccgtgtggtaactccctgtctgctt |
12434825 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 176 - 288
Target Start/End: Original strand, 12178545 - 12178657
Alignment:
| Q |
176 |
aatttgcaaaagtagaagcaaagaaaatacctatatgtacttgaatcgaagccagataaattagctacttcaaagagagccttcttccacctttgaatct |
275 |
Q |
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|||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
12178545 |
aatttgtaaaagtagaagcaaagaaaatacctatatgtacttgaatcaaagccagataaattagctacttcaaagagagcaatcttccacctttgaatct |
12178644 |
T |
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| Q |
276 |
tatctttgccttg |
288 |
Q |
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| T |
12178645 |
tatctttgccttg |
12178657 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 176 - 288
Target Start/End: Original strand, 12422973 - 12423085
Alignment:
| Q |
176 |
aatttgcaaaagtagaagcaaagaaaatacctatatgtacttgaatcgaagccagataaattagctacttcaaagagagccttcttccacctttgaatct |
275 |
Q |
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|||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
12422973 |
aatttgtaaaagtagaagcaaagaaaatacctatatgtacttgaatcaaagccagataaattagctacttcaaagagagcaatcttccacctttgaatct |
12423072 |
T |
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| Q |
276 |
tatctttgccttg |
288 |
Q |
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||||||||||||| |
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| T |
12423073 |
tatctttgccttg |
12423085 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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