View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11721_high_56 (Length: 318)
Name: NF11721_high_56
Description: NF11721
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11721_high_56 |
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Alignment Details
Target: chr3 (Bit Score: 197; Significance: 1e-107; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 1 - 303
Target Start/End: Complemental strand, 2640055 - 2639777
Alignment:
| Q |
1 |
cattatgttcgtctaagccattgaatatagagacctgaaagctcgcataattattttgttaaattaggaaatcaaaatctgaaccattagatctttatca |
100 |
Q |
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| T |
2640055 |
cattatgttcgtctaagccattgaata--gagacctgaaagctcgcataattattttgttaaattaggaattcaaaatctgaaccattagatctttatca |
2639958 |
T |
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| Q |
101 |
atggtcaagatcactgactgtagtgagtgttgactgcactgattataggaaaaccttttctgcagttcagtcaaggacttactttcacattgagcgaatg |
200 |
Q |
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| T |
2639957 |
atggtcaa----------------------tgactgcactgattataggaaatccttttctgcagttcagtcaatgacttactttcacattgagggaatg |
2639880 |
T |
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| Q |
201 |
taaaactaaacaaatcaaacaactactagtataggttagtgaaacactgtcataactggttttgcataaatgaactggttactagaatatgcaatgacaa |
300 |
Q |
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| T |
2639879 |
taaaaccaaacaaatcaaacaactactagtataggttagtgaaacactgttataactggttttgcataaatgaactggttactagaatatgcaatgacaa |
2639780 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 138 - 280
Target Start/End: Complemental strand, 2625477 - 2625332
Alignment:
| Q |
138 |
actgattataggaaaaccttttctgcagttcagtcaaggac---ttactttcacattgagcgaatgtaaaactaaacaaatcaaacaactactagtatag |
234 |
Q |
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| T |
2625477 |
actgattataggaaatccttttctgtagttcagccaaggaggatttactttcacattgaatgaacgtaaaaccaaacaaatcaaacaagtactcgtatag |
2625378 |
T |
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| Q |
235 |
gttagtgaaacactgtcataactggttttgcataaatgaactggtt |
280 |
Q |
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| T |
2625377 |
attcgcgaaacattgttataaatggttttgcacaaatgaaccggtt |
2625332 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 208 - 280
Target Start/End: Complemental strand, 765531 - 765459
Alignment:
| Q |
208 |
aaacaaatcaaacaactactagtataggttagtgaaacactgtcataactggttttgcataaatgaactggtt |
280 |
Q |
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||||||| |||||| ||||||||||| | |||||||||| || | ||||||||||||||||| ||||||||| |
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| T |
765531 |
aaacaaaccaaacatgtactagtatagatcagtgaaacaccgttagaactggttttgcataaaagaactggtt |
765459 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 119 - 167
Target Start/End: Complemental strand, 2625543 - 2625495
Alignment:
| Q |
119 |
tgtagtgagtgttgactgcactgattataggaaaaccttttctgcagtt |
167 |
Q |
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| T |
2625543 |
tgtagtgagtgttgactgcactgattatagaaaatccttctctgtagtt |
2625495 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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