View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11721_high_57 (Length: 316)
Name: NF11721_high_57
Description: NF11721
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11721_high_57 |
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Alignment Details
Target: chr1 (Bit Score: 203; Significance: 1e-111; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 1 - 282
Target Start/End: Complemental strand, 31059413 - 31059118
Alignment:
| Q |
1 |
agattgaaagagagaatcatagagtgaatgcaatagtggtgccagaagggtctcttgtgccaatgaatttcaagtgcactagggtttgggtttgggtcga |
100 |
Q |
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| T |
31059413 |
agattgaaagagagaatcatagagtgaatgcaatagtggtgccggaagggtctcttgtgccaatgaatttcaagtgcactagggtttgggtttgggtcga |
31059314 |
T |
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| Q |
101 |
caaagaaaggaaagtctttcgagtgccaaaaataggataactagctacccagct------------atattaatgaataagactatggggtggctagcta |
188 |
Q |
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| T |
31059313 |
caaagaagggaaagtctttcgagtgccaaaaataggataactagctacccagctattagtgatgcaatattaatgaataagactatggggtggctagcta |
31059214 |
T |
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| Q |
189 |
gcaaaaatgatcattatcaatgtcatc--nnnnnnnnnnnagtgaatcttccatattcactattctaaagatatcttgaattggccttttataaat |
282 |
Q |
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| T |
31059213 |
gcaaaaatgatcattatcaatgtcatctttttttttttttagtgaatcttccatattcactattctaaagatatcttgaattggccttttataaat |
31059118 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 104; E-Value: 8e-52
Query Start/End: Original strand, 1 - 160
Target Start/End: Complemental strand, 31068089 - 31067930
Alignment:
| Q |
1 |
agattgaaagagagaatcatagagtgaatgcaatagtggtgccagaagggtctcttgtgccaatgaatttcaagtgcactagggtttgggtttgggtcga |
100 |
Q |
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|||| |||||||||||| | | ||||||||||||||||||||||||||||||| ||||| ||||| |||||||||||||||||||||||||||||||||| |
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| T |
31068089 |
agatagaaagagagaatgagaaagtgaatgcaatagtggtgccagaagggtctgttgtgacaatggatttcaagtgcactagggtttgggtttgggtcga |
31067990 |
T |
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| Q |
101 |
caaagaaaggaaagtctttcgagtgccaaaaataggataactagctacccagctatatta |
160 |
Q |
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| T |
31067989 |
caaacatgggagagtcactcgaatgccaaaaataggataactagctacccagctatatta |
31067930 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 175 - 212
Target Start/End: Complemental strand, 31067801 - 31067764
Alignment:
| Q |
175 |
ggggtggctagctagcaaaaatgatcattatcaatgtc |
212 |
Q |
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||||||||| |||||||||||||||||||||||||||| |
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| T |
31067801 |
ggggtggctggctagcaaaaatgatcattatcaatgtc |
31067764 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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