View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11721_high_58 (Length: 316)

Name: NF11721_high_58
Description: NF11721
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11721_high_58
NF11721_high_58
[»] chr7 (6 HSPs)
chr7 (7-316)||(4856535-4856827)
chr7 (131-287)||(25432042-25432203)
chr7 (91-167)||(36647449-36647525)
chr7 (191-297)||(41830167-41830271)
chr7 (93-129)||(34510834-34510870)
chr7 (91-167)||(41830300-41830376)
[»] chr1 (5 HSPs)
chr1 (203-296)||(50038529-50038622)
chr1 (92-167)||(18705671-18705746)
chr1 (219-280)||(12436201-12436262)
chr1 (93-149)||(29849953-29850007)
chr1 (95-167)||(9908147-9908218)
[»] chr5 (4 HSPs)
chr5 (198-276)||(15531461-15531539)
chr5 (214-276)||(15531586-15531648)
chr5 (91-166)||(41951693-41951768)
chr5 (91-168)||(35309109-35309186)
[»] chr3 (2 HSPs)
chr3 (144-299)||(10744725-10744885)
chr3 (91-129)||(52737791-52737829)
[»] chr6 (3 HSPs)
chr6 (131-248)||(1136230-1136352)
chr6 (92-167)||(8655790-8655865)
chr6 (91-129)||(787437-787475)
[»] chr8 (1 HSPs)
chr8 (91-167)||(4676261-4676336)
[»] chr2 (1 HSPs)
chr2 (91-167)||(24038363-24038439)
[»] scaffold0023 (1 HSPs)
scaffold0023 (193-297)||(111613-111715)


Alignment Details
Target: chr7 (Bit Score: 233; Significance: 1e-129; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 233; E-Value: 1e-129
Query Start/End: Original strand, 7 - 316
Target Start/End: Original strand, 4856535 - 4856827
Alignment:
Q  7 gaaacagagataaaatgagagaacacgaaggaaaaattcataacagaaaattagaataaggaagaaagggaaagtgagaaaatgtatccttcaaggtgaa 106  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  4856535 gaaacatagataaaatgagagaacacgaaggaaaaattcataacagaaaattagaataaggaagaaagggaaagtgagaaaatgtatccttcaagatgaa 4856634  T
Q  107 taccagatttgctctgataccatattataaaacttggcatccagagaaggaatgagagaaatattgcaaagctctttgtagaatttgaatattacaaaat 206  Q
    ||||||| ||||||||||||||||||||||||||||||||    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4856635 taccagaattgctctgataccatattataaaacttggcat----agaaggaatgagagaaatattgcaaagctctttgtagaatttgaatattacaaaat 4856730  T
Q  207 gagtgaaagtttccactaatagagtggttacaagctatttatggtactatttattagaactaatataccactaaacctatatctctaatactacctccgt 306  Q
    |||             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  4856731 gag-------------taatagagtggttacaagctatttatggtactatttattagaactaatataccactaaacctatatctctaatactatctccgt 4856817  T

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Target: chr7; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 131 - 287
Target Start/End: Complemental strand, 25432203 - 25432042
Alignment:
Q  131 ttataaaacttggcatccagagaaggaatgagagaaatattgcaaagctctttgta------gaatttgaatattacaaaatgagtgaaagtttccacta 224  Q
    |||| |||| |||||||||  ||||||||||||||||| | |||||| ||||| ||      ||| ||||||||||| || |||||||||||  ||||||    
T  25432203 ttatgaaacatggcatccatggaaggaatgagagaaatgtagcaaagttctttatattgatggaaattgaatattacgaa-tgagtgaaagtgcccacta 25432105  T
Q  225 atagagtggttacaagctatttatggtactatttattagaactaatataccactaaacctata 287  Q
    || | ||||||||||||||||||| ||||||| |||||| |||||||||||||||| ||||||    
T  25432104 atggggtggttacaagctatttatagtactatctattaggactaatataccactaatcctata 25432042  T

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Target: chr7; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 91 - 167
Target Start/End: Original strand, 36647449 - 36647525
Alignment:
Q  91 tatccttcaaggtgaataccagatttgctctgataccatattataaaacttggcatccagagaaggaatgagagaaa 167  Q
    ||||||||||| ||||||||||||| ||||||||||||||||| ||||| ||  |||||  ||| ||||||||||||    
T  36647449 tatccttcaagatgaataccagattagctctgataccatattagaaaacatgatatccaatgaaagaatgagagaaa 36647525  T

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Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 191 - 297
Target Start/End: Complemental strand, 41830271 - 41830167
Alignment:
Q  191 ttgaatattacaaaatgagtgaaagtttccactaatagagtggttacaagctatttatggtactatttattagaactaatataccactaaacctatatct 290  Q
    |||||||||||||||||||  |||||| || ||||| | ||||||||||| |||||||  |||| | || ||| |||||||| | ||| || ||||||||    
T  41830271 ttgaatattacaaaatgag-aaaagttccctctaatggggtggttacaagttatttatactactctctactaggactaatatgctact-aatctatatct 41830174  T
Q  291 ctaatac 297  Q
    |||||||    
T  41830173 ctaatac 41830167  T

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Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 93 - 129
Target Start/End: Complemental strand, 34510870 - 34510834
Alignment:
Q  93 tccttcaaggtgaataccagatttgctctgataccat 129  Q
    |||||||||||| |||||||||| |||||||||||||    
T  34510870 tccttcaaggtggataccagattagctctgataccat 34510834  T

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Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 91 - 167
Target Start/End: Complemental strand, 41830376 - 41830300
Alignment:
Q  91 tatccttcaaggtgaataccagatttgctctgataccatattataaaacttggcatccagagaaggaatgagagaaa 167  Q
    |||||||||||||| ||||||  || ||||| ||||||| |||  |||| || ||||||  ||||||||||||||||    
T  41830376 tatccttcaaggtggataccaagttagctctaataccatgttaggaaacatgtcatccatggaaggaatgagagaaa 41830300  T

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Target: chr1 (Bit Score: 58; Significance: 2e-24; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 203 - 296
Target Start/End: Complemental strand, 50038622 - 50038529
Alignment:
Q  203 aaatgagtgaaagtttccactaatagagtggttacaagctatttatggtactatttattagaactaatataccactaaacctatatctctaata 296  Q
    ||||||||||||||| |||||||| | || |||||||||||||| ||||||||| |||||| |||||||||||||||| | |||||||||||||    
T  50038622 aaatgagtgaaagttcccactaatggggtagttacaagctatttttggtactatctattaggactaatataccactaatcttatatctctaata 50038529  T

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Target: chr1; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 92 - 167
Target Start/End: Original strand, 18705671 - 18705746
Alignment:
Q  92 atccttcaaggtgaataccagatttgctctgataccatattataaaacttggcatccagagaaggaatgagagaaa 167  Q
    ||||||||||||| |||||||||| ||||||||||||| ||| ||||| |||||||||   |||||| ||||||||    
T  18705671 atccttcaaggtggataccagattagctctgataccatgttagaaaacatggcatccatgaaaggaaggagagaaa 18705746  T

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Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 219 - 280
Target Start/End: Complemental strand, 12436262 - 12436201
Alignment:
Q  219 ccactaatagagtggttacaagctatttatggtactatttattagaactaatataccactaa 280  Q
    |||||||| | |||||||| ||||||||||  ||||||||| |||||||||||| |||||||    
T  12436262 ccactaatggggtggttactagctatttatactactatttactagaactaatatgccactaa 12436201  T

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Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 93 - 149
Target Start/End: Original strand, 29849953 - 29850007
Alignment:
Q  93 tccttcaaggtgaataccagatttgctctgataccatattataaaacttggcatcca 149  Q
    |||||||||||| ||||||  |||||||||||||||| |||| |||| |||||||||    
T  29849953 tccttcaaggtggatacca--tttgctctgataccatgttatgaaacatggcatcca 29850007  T

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Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 95 - 167
Target Start/End: Original strand, 9908147 - 9908218
Alignment:
Q  95 cttcaaggtgaataccagatttgctctgataccatattataaaacttggcatccagagaaggaatgagagaaa 167  Q
    |||||||||| |||||||||| ||||||||||||| |||  |||| ||  ||||| | |||||||||||||||    
T  9908147 cttcaaggtggataccagattagctctgataccatgttaggaaacatgatatcca-acaaggaatgagagaaa 9908218  T

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Target: chr5 (Bit Score: 51; Significance: 3e-20; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 198 - 276
Target Start/End: Original strand, 15531461 - 15531539
Alignment:
Q  198 ttacaaaatgagtgaaagtttccactaatagagtggttacaagctatttatggtactatttattagaactaatatacca 276  Q
    |||||||||||||||||||| |||||||| | |||||||||| |||||||| ||||||| |||||| ||||||||||||    
T  15531461 ttacaaaatgagtgaaagttcccactaatggggtggttacaaactatttatagtactatctattaggactaatatacca 15531539  T

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Target: chr5; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 214 - 276
Target Start/End: Original strand, 15531586 - 15531648
Alignment:
Q  214 agtttccactaatagagtggttacaagctatttatggtactatttattagaactaatatacca 276  Q
    |||| |||||||| | ||||||||||||||||||| ||||||| |||||| ||||||||||||    
T  15531586 agttcccactaattgggtggttacaagctatttatagtactatctattaggactaatatacca 15531648  T

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Target: chr5; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 91 - 166
Target Start/End: Original strand, 41951693 - 41951768
Alignment:
Q  91 tatccttcaaggtgaataccagatttgctctgataccatattataaaacttggcatccagagaaggaatgagagaa 166  Q
    |||||||||||| | |||||||||| ||||| ||||||| |||  |||| |||||||||  |||||||||||||||    
T  41951693 tatccttcaaggcggataccagattagctctaataccatgttaggaaacatggcatccatggaaggaatgagagaa 41951768  T

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Target: chr5; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 91 - 168
Target Start/End: Original strand, 35309109 - 35309186
Alignment:
Q  91 tatccttcaaggtgaataccagatttgctctgataccatattataaaacttggcatccagagaaggaatgagagaaat 168  Q
    |||||||||||||| |||||||||| ||||||||||||| |||  |||| ||  |||||  |||||||||||| ||||    
T  35309109 tatccttcaaggtggataccagattagctctgataccatgttaggaaacatgatatccaatgaaggaatgagaaaaat 35309186  T

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Target: chr3 (Bit Score: 47; Significance: 8e-18; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 144 - 299
Target Start/End: Complemental strand, 10744885 - 10744725
Alignment:
Q  144 catccagagaaggaatgagagaaatattgcaaagctctttgta------gaatttgaatattacaaaatgagtgaaagtttccactaatagagtggttac 237  Q
    |||||| |||||||||||||||||| | | |||||||||||||      ||| |||||||||| ||| | ||||||| |  ||||||||   |||||| |    
T  10744885 catccatagaaggaatgagagaaatgtagtaaagctctttgtattgatggaaattgaatattataaatt-agtgaaattgcccactaatgaggtggtttc 10744787  T
Q  238 aagctatttatggtactatttattagaactaatataccactaaacctatatctctaatacta 299  Q
    |||||||||||  |||||| |||||  |||||||||||||||| | ||||||||||||||||    
T  10744786 aagctatttatactactatatattaagactaatataccactaatcatatatctctaatacta 10744725  T

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Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 91 - 129
Target Start/End: Original strand, 52737791 - 52737829
Alignment:
Q  91 tatccttcaaggtgaataccagatttgctctgataccat 129  Q
    |||||||||||||| ||||||||||||||||||||||||    
T  52737791 tatccttcaaggtggataccagatttgctctgataccat 52737829  T

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Target: chr6 (Bit Score: 37; Significance: 0.000000000007; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 131 - 248
Target Start/End: Original strand, 1136230 - 1136352
Alignment:
Q  131 ttataaaacttggcatccagagaaggaatgagagaaatattgcaaagctctttgta------gaatttgaatattacaaaatgagtgaaagtttccacta 224  Q
    |||| |||| || ||||||  ||||||||||||||||||| ||||| |||||| ||      ||| |||||||||||||| ||||||||||| |||||||    
T  1136230 ttatcaaacatgacatccatggaaggaatgagagaaatatagcaaatctctttatattgatggaaattgaatattacaaa-tgagtgaaagtgtccacta 1136328  T
Q  225 atagagtggttacaagctatttat 248  Q
    || | |||| |||| |||||||||    
T  1136329 atggggtgggtacacgctatttat 1136352  T

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Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 92 - 167
Target Start/End: Original strand, 8655790 - 8655865
Alignment:
Q  92 atccttcaaggtgaataccagatttgctctgataccatattataaaacttggcatccagagaaggaatgagagaaa 167  Q
    |||||||||||||  ||||||||  ||||||||||||| |||  |||| ||||||||| |||||||| ||||||||    
T  8655790 atccttcaaggtgggtaccagataagctctgataccatgttaggaaacatggcatccatagaaggaaggagagaaa 8655865  T

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Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 91 - 129
Target Start/End: Complemental strand, 787475 - 787437
Alignment:
Q  91 tatccttcaaggtgaataccagatttgctctgataccat 129  Q
    |||||||||||||| |||||| |||||||||||||||||    
T  787475 tatccttcaaggtggataccatatttgctctgataccat 787437  T

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Target: chr8 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 91 - 167
Target Start/End: Complemental strand, 4676336 - 4676261
Alignment:
Q  91 tatccttcaaggtgaataccagatttgctctgataccatattataaaacttggcatccagagaaggaatgagagaaa 167  Q
    |||||||||||||| ||||||| || |||||||||||||||||  |||| ||  |||||  ||||||||||||||||    
T  4676336 tatccttcaaggtggataccaggttagctctgataccatattaggaaacatgatatcca-cgaaggaatgagagaaa 4676261  T

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Target: chr2 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 91 - 167
Target Start/End: Complemental strand, 24038439 - 24038363
Alignment:
Q  91 tatccttcaaggtgaataccagatttgctctgataccatattataaaacttggcatccagagaaggaatgagagaaa 167  Q
    |||||||||||||| ||||||     ||||||||||||| ||| ||||| |||||||||  ||||||||||||||||    
T  24038439 tatccttcaaggtggataccaaccaggctctgataccatgttagaaaacatggcatccatggaaggaatgagagaaa 24038363  T

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Target: scaffold0023 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0023
Description:

Target: scaffold0023; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 193 - 297
Target Start/End: Original strand, 111613 - 111715
Alignment:
Q  193 gaatattacaaaatgagtgaaagtttccactaatagagtggttacaagctatttatggtactatttattagaactaatataccactaaacctatatctct 292  Q
    |||||||||||||||||  |||||| || ||||| | ||||||||||| |||||||  |||| | || ||| |||||||| | ||| || ||||||||||    
T  111613 gaatattacaaaatgag-aaaagttccctctaatggggtggttacaagttatttatactactctctactaggactaatatgctact-aatctatatctct 111710  T
Q  293 aatac 297  Q
    |||||    
T  111711 aatac 111715  T

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