View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11721_high_69 (Length: 256)
Name: NF11721_high_69
Description: NF11721
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11721_high_69 |
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| [»] chr4 (2 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 220; Significance: 1e-121; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 1 - 256
Target Start/End: Complemental strand, 37820346 - 37820092
Alignment:
| Q |
1 |
taaagttcccatcaacttggctttcccagcaagtgttccaaggtttggcttctccattcttcaaaacacannnnnnnncaaccgtttgattaaatgttat |
100 |
Q |
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| T |
37820346 |
taaagttcccatcaacttggctttcccagcaagtgttccaaggtttggcttctccattcttcaaaacacattttttta-aaccgtttgattaaatgttat |
37820248 |
T |
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| Q |
101 |
tcagtatcaataatggtaagatacttagaattaaaaatataagaaaaaatgcatgtgtatttatattttattttggatgaagtagaacgttaaggttctt |
200 |
Q |
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| T |
37820247 |
tcagtatcaataatggaaagatacttagaattaaaaatataagaaaaaatgcatgtgtatttatattttattttggatgaagtagaacgttaaggttctt |
37820148 |
T |
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| Q |
201 |
acttacctaagagaaacaaccaagaggtaggtaatggctgggatgagatttaacat |
256 |
Q |
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| T |
37820147 |
acttacctaagagaaacaaccaagaggtaggtaatggctgggatgagatttaacat |
37820092 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 204 - 256
Target Start/End: Complemental strand, 37823704 - 37823652
Alignment:
| Q |
204 |
tacctaagagaaacaaccaagaggtaggtaatggctgggatgagatttaacat |
256 |
Q |
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| T |
37823704 |
tacctaagagaaacaaccatgatgtaggtaatggcagggatgagatttaacat |
37823652 |
T |
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