View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11721_high_79 (Length: 242)

Name: NF11721_high_79
Description: NF11721
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11721_high_79
NF11721_high_79
[»] chr4 (47 HSPs)
chr4 (66-229)||(15431164-15431327)
chr4 (66-229)||(15437778-15437941)
chr4 (65-229)||(9716950-9717114)
chr4 (66-223)||(33410805-33410962)
chr4 (66-216)||(5669628-5669778)
chr4 (66-229)||(18910604-18910767)
chr4 (66-229)||(3798633-3798796)
chr4 (66-229)||(19865480-19865643)
chr4 (66-229)||(5721808-5721971)
chr4 (67-229)||(19861124-19861286)
chr4 (66-215)||(12237354-12237503)
chr4 (66-194)||(37104113-37104241)
chr4 (64-221)||(5680467-5680624)
chr4 (103-229)||(53093758-53093884)
chr4 (66-147)||(56198029-56198110)
chr4 (65-135)||(44164000-44164071)
chr4 (66-216)||(49269735-49269885)
chr4 (66-147)||(29323979-29324060)
chr4 (66-147)||(44809823-44809904)
chr4 (65-142)||(15405822-15405899)
chr4 (66-142)||(27013229-27013306)
chr4 (66-147)||(56194722-56194803)
chr4 (66-149)||(47114776-47114859)
chr4 (66-135)||(27677896-27677966)
chr4 (66-142)||(3718336-3718412)
chr4 (158-229)||(40617649-40617720)
chr4 (66-135)||(15430696-15430766)
chr4 (66-135)||(15437310-15437380)
chr4 (66-135)||(52007362-52007431)
chr4 (71-139)||(34320771-34320839)
chr4 (66-135)||(19819950-19820020)
chr4 (66-142)||(19826701-19826778)
chr4 (66-135)||(12782106-12782175)
chr4 (66-135)||(27691955-27692025)
chr4 (74-135)||(40794200-40794261)
chr4 (66-135)||(53010389-53010458)
chr4 (66-147)||(33926121-33926202)
chr4 (74-135)||(21418987-21419048)
chr4 (66-135)||(24044988-24045057)
chr4 (66-104)||(38284377-38284415)
chr4 (107-147)||(15813001-15813041)
chr4 (65-104)||(10384775-10384814)
chr4 (66-184)||(14571026-14571144)
chr4 (66-104)||(11706546-11706584)
chr4 (66-104)||(17669447-17669485)
chr4 (66-104)||(34018661-34018699)
chr4 (66-104)||(48416410-48416448)
[»] chr3 (37 HSPs)
chr3 (66-229)||(538015-538178)
chr3 (66-227)||(10884018-10884179)
chr3 (66-229)||(23299390-23299553)
chr3 (66-229)||(6921890-6922053)
chr3 (66-229)||(52198305-52198468)
chr3 (66-229)||(18645578-18645741)
chr3 (65-191)||(10107489-10107615)
chr3 (66-149)||(17532586-17532669)
chr3 (63-229)||(35411673-35411840)
chr3 (66-229)||(16185493-16185656)
chr3 (66-135)||(29344703-29344773)
chr3 (66-135)||(53814971-53815040)
chr3 (66-142)||(54460367-54460443)
chr3 (67-135)||(9380012-9380080)
chr3 (66-142)||(34984682-34984758)
chr3 (66-135)||(16243166-16243235)
chr3 (66-135)||(20729407-20729477)
chr3 (65-138)||(41976320-41976393)
chr3 (66-135)||(3839790-3839862)
chr3 (74-142)||(54736774-54736842)
chr3 (178-229)||(9380143-9380194)
chr3 (66-135)||(10880776-10880845)
chr3 (66-147)||(19302283-19302364)
chr3 (66-102)||(31857055-31857091)
chr3 (65-104)||(2280741-2280780)
chr3 (66-104)||(9157508-9157546)
chr3 (66-104)||(42355298-42355336)
chr3 (66-104)||(50462417-50462455)
chr3 (158-194)||(55032789-55032825)
chr3 (69-135)||(43808881-43808947)
chr3 (65-104)||(43926123-43926162)
chr3 (66-104)||(10962428-10962466)
chr3 (66-104)||(10965937-10965975)
chr3 (66-104)||(50095816-50095854)
chr3 (63-104)||(7485857-7485898)
chr3 (87-147)||(19305466-19305526)
chr3 (72-104)||(10958777-10958809)
[»] chr2 (39 HSPs)
chr2 (66-229)||(25869835-25869998)
chr2 (66-229)||(25873203-25873366)
chr2 (66-229)||(26358672-26358835)
chr2 (66-229)||(36809272-36809435)
chr2 (65-229)||(38006123-38006287)
chr2 (66-229)||(30275528-30275691)
chr2 (63-194)||(15466167-15466298)
chr2 (66-229)||(25821754-25821922)
chr2 (64-229)||(25139877-25140042)
chr2 (66-228)||(16788389-16788550)
chr2 (65-194)||(29439596-29439723)
chr2 (64-147)||(38014634-38014717)
chr2 (69-147)||(36985654-36985732)
chr2 (66-147)||(45453051-45453132)
chr2 (66-147)||(45456300-45456381)
chr2 (64-135)||(10599949-10600020)
chr2 (66-147)||(31430557-31430638)
chr2 (66-135)||(5665830-5665899)
chr2 (66-135)||(3874482-3874551)
chr2 (66-135)||(43722904-43722973)
chr2 (66-135)||(5104953-5105020)
chr2 (66-104)||(9189534-9189572)
chr2 (66-135)||(13972744-13972813)
chr2 (66-104)||(31586785-31586823)
chr2 (66-104)||(37280558-37280596)
chr2 (66-104)||(43208771-43208809)
chr2 (64-135)||(6825972-6826043)
chr2 (111-147)||(31428368-31428404)
chr2 (65-104)||(1507482-1507521)
chr2 (66-104)||(1504280-1504318)
chr2 (66-104)||(8887842-8887880)
chr2 (66-104)||(9186305-9186343)
chr2 (66-104)||(13517415-13517453)
chr2 (66-104)||(25957325-25957363)
chr2 (66-104)||(40780658-40780696)
chr2 (66-104)||(45494030-45494068)
chr2 (66-104)||(45501772-45501810)
chr2 (66-103)||(23674544-23674581)
chr2 (68-135)||(13136764-13136831)
[»] chr1 (23 HSPs)
chr1 (66-229)||(2793299-2793462)
chr1 (66-229)||(1951182-1951345)
chr1 (66-221)||(49499413-49499568)
chr1 (66-229)||(29644145-29644308)
chr1 (106-229)||(34733100-34733223)
chr1 (66-135)||(41059164-41059234)
chr1 (66-147)||(45961626-45961707)
chr1 (67-147)||(27537132-27537212)
chr1 (66-147)||(31204014-31204095)
chr1 (66-135)||(2404722-2404791)
chr1 (64-104)||(47708779-47708819)
chr1 (66-135)||(42021721-42021790)
chr1 (66-103)||(22460406-22460443)
chr1 (66-142)||(6071824-6071895)
chr1 (66-135)||(21019299-21019367)
chr1 (66-104)||(3088697-3088735)
chr1 (66-104)||(45940621-45940659)
chr1 (66-103)||(22454282-22454319)
chr1 (66-103)||(49147113-49147150)
chr1 (65-104)||(37184745-37184784)
chr1 (66-104)||(28110283-28110321)
chr1 (105-142)||(7634926-7634963)
chr1 (66-115)||(21108345-21108393)
[»] chr7 (27 HSPs)
chr7 (65-229)||(10431385-10431549)
chr7 (65-229)||(26556509-26556673)
chr7 (66-229)||(4542074-4542237)
chr7 (66-229)||(2442114-2442277)
chr7 (66-229)||(8276012-8276175)
chr7 (66-147)||(48645840-48645921)
chr7 (65-135)||(45291405-45291475)
chr7 (66-135)||(45288069-45288138)
chr7 (66-147)||(16164889-16164970)
chr7 (66-147)||(48644616-48644697)
chr7 (66-135)||(9865573-9865642)
chr7 (66-135)||(20081571-20081640)
chr7 (64-135)||(17729971-17730042)
chr7 (66-147)||(6602621-6602702)
chr7 (65-104)||(11826392-11826431)
chr7 (65-104)||(37167032-37167071)
chr7 (66-142)||(4596848-4596924)
chr7 (66-98)||(13450733-13450765)
chr7 (65-104)||(22233519-22233558)
chr7 (65-104)||(22253181-22253220)
chr7 (66-135)||(4694723-4694792)
chr7 (66-135)||(9080376-9080445)
chr7 (66-135)||(10344616-10344685)
chr7 (66-104)||(22256455-22256493)
chr7 (66-104)||(23314547-23314585)
chr7 (66-104)||(37416146-37416184)
chr7 (66-104)||(37423678-37423716)
[»] chr5 (25 HSPs)
chr5 (66-229)||(28442018-28442181)
chr5 (66-229)||(42061486-42061649)
chr5 (65-229)||(31862871-31863035)
chr5 (65-194)||(14376706-14376835)
chr5 (66-229)||(43490793-43490956)
chr5 (66-229)||(32837083-32837246)
chr5 (66-229)||(37214766-37214929)
chr5 (66-229)||(22937892-22938055)
chr5 (65-142)||(21336665-21336743)
chr5 (66-147)||(14016955-14017036)
chr5 (66-135)||(21827971-21828041)
chr5 (64-130)||(7270239-7270305)
chr5 (66-147)||(17747617-17747698)
chr5 (65-135)||(28788332-28788402)
chr5 (66-142)||(40916810-40916889)
chr5 (178-229)||(21336558-21336609)
chr5 (64-142)||(30065560-30065638)
chr5 (66-135)||(18031710-18031779)
chr5 (66-104)||(41307407-41307445)
chr5 (66-115)||(25329456-25329504)
chr5 (68-135)||(39191333-39191400)
chr5 (178-229)||(21827857-21827908)
chr5 (65-103)||(25329511-25329549)
chr5 (66-99)||(31374760-31374793)
chr5 (181-229)||(39191446-39191494)
[»] chr8 (29 HSPs)
chr8 (66-223)||(10663011-10663168)
chr8 (66-224)||(18722151-18722310)
chr8 (66-229)||(33878075-33878238)
chr8 (70-229)||(25595521-25595681)
chr8 (70-229)||(25592336-25592496)
chr8 (66-229)||(43682634-43682798)
chr8 (66-148)||(23612569-23612651)
chr8 (66-229)||(14420864-14421027)
chr8 (66-229)||(45156755-45156918)
chr8 (3-65)||(40420118-40420180)
chr8 (158-229)||(5540832-5540903)
chr8 (66-147)||(18826753-18826834)
chr8 (66-142)||(19792926-19793004)
chr8 (66-147)||(14589735-14589816)
chr8 (158-229)||(25228106-25228175)
chr8 (4-60)||(40422811-40422867)
chr8 (66-147)||(22174810-22174891)
chr8 (66-135)||(5981151-5981220)
chr8 (66-135)||(30640505-30640576)
chr8 (66-135)||(12582218-12582287)
chr8 (66-104)||(20261647-20261685)
chr8 (66-104)||(21048277-21048315)
chr8 (65-104)||(41779887-41779926)
chr8 (66-104)||(13096050-13096088)
chr8 (66-104)||(16952998-16953036)
chr8 (66-104)||(31984107-31984145)
chr8 (66-130)||(5540931-5540995)
chr8 (193-229)||(20520079-20520115)
chr8 (181-229)||(30640624-30640672)
[»] scaffold0005 (2 HSPs)
scaffold0005 (77-227)||(290974-291124)
scaffold0005 (66-184)||(246232-246350)
[»] scaffold0035 (1 HSPs)
scaffold0035 (65-229)||(61596-61760)
[»] chr6 (22 HSPs)
chr6 (66-229)||(5739026-5739190)
chr6 (70-229)||(23379650-23379810)
chr6 (70-229)||(23388989-23389149)
chr6 (66-229)||(34501416-34501577)
chr6 (66-229)||(9953036-9953199)
chr6 (67-202)||(2371414-2371549)
chr6 (64-147)||(31071492-31071575)
chr6 (66-142)||(10289186-10289262)
chr6 (66-135)||(28666107-28666176)
chr6 (66-103)||(12981151-12981188)
chr6 (65-104)||(9314766-9314805)
chr6 (65-104)||(28116939-28116978)
chr6 (66-104)||(21633551-21633589)
chr6 (66-104)||(22463515-22463553)
chr6 (63-104)||(2378432-2378473)
chr6 (68-104)||(9840321-9840357)
chr6 (103-142)||(13022205-13022244)
chr6 (103-149)||(6512433-6512479)
chr6 (66-104)||(15543215-15543253)
chr6 (66-99)||(28848037-28848070)
chr6 (103-147)||(5259114-5259158)
chr6 (183-215)||(13004611-13004643)
[»] scaffold0334 (1 HSPs)
scaffold0334 (66-190)||(18463-18588)
[»] scaffold0080 (1 HSPs)
scaffold0080 (158-229)||(26337-26408)
[»] scaffold0045 (1 HSPs)
scaffold0045 (66-147)||(88965-89046)
[»] scaffold0757 (1 HSPs)
scaffold0757 (66-135)||(4563-4632)
[»] scaffold1684 (1 HSPs)
scaffold1684 (65-142)||(398-475)
[»] scaffold0381 (1 HSPs)
scaffold0381 (66-142)||(6477-6554)
[»] scaffold0567 (1 HSPs)
scaffold0567 (66-104)||(7017-7055)
[»] scaffold0520 (1 HSPs)
scaffold0520 (66-135)||(4811-4880)
[»] scaffold0270 (3 HSPs)
scaffold0270 (66-135)||(991-1060)
scaffold0270 (66-135)||(4351-4420)
scaffold0270 (66-135)||(11481-11550)
[»] scaffold0015 (2 HSPs)
scaffold0015 (66-130)||(197242-197306)
scaffold0015 (192-229)||(197357-197394)
[»] scaffold1026 (1 HSPs)
scaffold1026 (66-104)||(2563-2601)
[»] scaffold0014 (1 HSPs)
scaffold0014 (66-104)||(226465-226503)
[»] scaffold1993 (1 HSPs)
scaffold1993 (65-116)||(1044-1094)


Alignment Details
Target: chr4 (Bit Score: 124; Significance: 7e-64; HSPs: 47)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 124; E-Value: 7e-64
Query Start/End: Original strand, 66 - 229
Target Start/End: Original strand, 15431164 - 15431327
Alignment:
Q  66 tgatgacagtcagtcattcactatttttagagtctttttcatgatattttgagttcacaagcaagtttaaacaacaaagaaaacnnnnnnnntagaagat 165  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||        ||||||||    
T  15431164 tgatgacagtcagtcattcactatttttagagtctttttcatgatattttgagttcacaagcaagtttaaacagcaaagaaaacaagagaaatagaagat 15431263  T
Q  166 ttcgaagaaagcaaaatcgtgtcacgattgttgaaaacgtggcacgatttggagcacaggatga 229  Q
    || |||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||    
T  15431264 tttgaagaaagcaaaatcgtgtcacgattgtcgaaaacgtgtcacgatttggagcacaggatga 15431327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 124; E-Value: 7e-64
Query Start/End: Original strand, 66 - 229
Target Start/End: Original strand, 15437778 - 15437941
Alignment:
Q  66 tgatgacagtcagtcattcactatttttagagtctttttcatgatattttgagttcacaagcaagtttaaacaacaaagaaaacnnnnnnnntagaagat 165  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||        ||||||||    
T  15437778 tgatgacagtcagtcattcactatttttagagtctttttcatgatattttgagttcacaagcaagtttaaacagcaaagaaaacaagagaaatagaagat 15437877  T
Q  166 ttcgaagaaagcaaaatcgtgtcacgattgttgaaaacgtggcacgatttggagcacaggatga 229  Q
    || |||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||    
T  15437878 tttgaagaaagcaaaatcgtgtcacgattgtcgaaaacgtgtcacgatttggagcacaggatga 15437941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 121; E-Value: 4e-62
Query Start/End: Original strand, 65 - 229
Target Start/End: Original strand, 9716950 - 9717114
Alignment:
Q  65 atgatgacagtcagtcattcactatttttagagtctttttcatgatattttgagttcacaagcaagtttaaacaacaaagaaaacnnnnnnnntagaaga 164  Q
    |||||||||||| |||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||        |||||||    
T  9716950 atgatgacagtcggtcattcactatttttagtgtcattttcatgatattttgagttcacaagcaagtttaaacaacaaagaaaacaagaaaaatagaaga 9717049  T
Q  165 tttcgaagaaagcaaaatcgtgtcacgattgttgaaaacgtggcacgatttggagcacaggatga 229  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||    
T  9717050 tttcgaagaaagcaaaatcgtgtcacgattgttgaaaacgtggcacaatttagagcacaggatga 9717114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 110; E-Value: 1e-55
Query Start/End: Original strand, 66 - 223
Target Start/End: Complemental strand, 33410962 - 33410805
Alignment:
Q  66 tgatgacagtcagtcattcactatttttagagtctttttcatgatattttgagttcacaagcaagtttaaacaacaaagaaaacnnnnnnnntagaagat 165  Q
    |||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||        ||||||||    
T  33410962 tgatgacagtcagtcattcactatttttagtgtcattttcatgatattttgagttcacaagcaagtttaaacaacaaagaaaacaagaaaaatagaagat 33410863  T
Q  166 ttcgaagaaagcaaaatcgtgtcacgattgttgaaaacgtggcacgatttggagcaca 223  Q
    || ||||||||||||||||||||||||||||||||||||||  |||||||| ||||||    
T  33410862 tttgaagaaagcaaaatcgtgtcacgattgttgaaaacgtgttacgatttgaagcaca 33410805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 107; E-Value: 9e-54
Query Start/End: Original strand, 66 - 216
Target Start/End: Original strand, 5669628 - 5669778
Alignment:
Q  66 tgatgacagtcagtcattcactatttttagagtctttttcatgatattttgagttcacaagcaagtttaaacaacaaagaaaacnnnnnnnntagaagat 165  Q
    |||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||        ||||||||    
T  5669628 tgatgacagtcagtcattcactatttttagtgtcattttcatgatattttgagttcacaagcaagtttaaacaacaaagaaaacaagaaaaatagaagat 5669727  T
Q  166 ttcgaagaaagcaaaatcgtgtcacgattgttgaaaacgtggcacgatttg 216  Q
    || |||||||||||||||||||||||||||||||||||||| ||| |||||    
T  5669728 tttgaagaaagcaaaatcgtgtcacgattgttgaaaacgtgtcacaatttg 5669778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 104; E-Value: 6e-52
Query Start/End: Original strand, 66 - 229
Target Start/End: Original strand, 18910604 - 18910767
Alignment:
Q  66 tgatgacagtcagtcattcactatttttagagtctttttcatgatattttgagttcacaagcaagtttaaacaacaaagaaaacnnnnnnnntagaagat 165  Q
    |||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||  |||||||||||||||| |        ||||||||    
T  18910604 tgatgacagtcagtcattcactatttttagtgtcattttcatgatattttgagttcacaagcaaacttaaacaacaaagaaagcaagaaaaatagaagat 18910703  T
Q  166 ttcgaagaaagcaaaatcgtgtcacgattgttgaaaacgtggcacgatttggagcacaggatga 229  Q
    || |||||||||||||||||||||||||||||||||||||| |||||||| ||||||| |||||    
T  18910704 tttgaagaaagcaaaatcgtgtcacgattgttgaaaacgtgtcacgatttagagcacatgatga 18910767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 66 - 229
Target Start/End: Complemental strand, 3798796 - 3798633
Alignment:
Q  66 tgatgacagtcagtcattcactatttttagagtctttttcatgatattttgagttcacaagcaagtttaaacaacaaagaaaacnnnnnnnntagaagat 165  Q
    |||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||| |||||||| |        ||||||||    
T  3798796 tgatgacagtcagtcattcactatttttagtgtcattttcatgatattttgagttcacaagcaagtttaaacagcaaagaaagcaagaaaaatagaagat 3798697  T
Q  166 ttcgaagaaagcaaaatcgtgtcacgattgttgaaaacgtggcacgatttggagcacaggatga 229  Q
    || ||||||||||||||| |||||||||||||||||| ||| ||||||||||| || |||||||    
T  3798696 tttgaagaaagcaaaatcttgtcacgattgttgaaaatgtgtcacgatttggaacaaaggatga 3798633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 66 - 229
Target Start/End: Complemental strand, 19865643 - 19865480
Alignment:
Q  66 tgatgacagtcagtcattcactatttttagagtctttttcatgatattttgagttcacaagcaagtttaaacaacaaagaaaacnnnnnnnntagaagat 165  Q
    |||||||||||||||||||||| ||||||| ||| |||||||||||||||||||||||||||||| |||||||||||||||| |        ||||||||    
T  19865643 tgatgacagtcagtcattcactgtttttagtgtcattttcatgatattttgagttcacaagcaagcttaaacaacaaagaaagcaagaaaaatagaagat 19865544  T
Q  166 ttcgaagaaagcaaaatcgtgtcacgattgttgaaaacgtggcacgatttggagcacaggatga 229  Q
    || ||||||| |||||||||||||||||| ||||||| ||  ||||||||||||||||||||||    
T  19865543 tttgaagaaaacaaaatcgtgtcacgattattgaaaatgtatcacgatttggagcacaggatga 19865480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 92; E-Value: 8e-45
Query Start/End: Original strand, 66 - 229
Target Start/End: Complemental strand, 5721971 - 5721808
Alignment:
Q  66 tgatgacagtcagtcattcactatttttagagtctttttcatgatattttgagttcacaagcaagtttaaacaacaaagaaaacnnnnnnnntagaagat 165  Q
    |||||||| ||||||||||||| ||||||| ||| ||||||||||||||  ||||||||| |||| ||||||| ||||||||||        ||||||||    
T  5721971 tgatgacaatcagtcattcactgtttttagtgtcattttcatgatatttcaagttcacaaacaagcttaaacagcaaagaaaacaagaaaaatagaagat 5721872  T
Q  166 ttcgaagaaagcaaaatcgtgtcacgattgttgaaaacgtggcacgatttggagcacaggatga 229  Q
    || |||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||    
T  5721871 tttgaagaaagcaaaatcgtgtcacgattgttgaaaacgtgtcacgatttgaagcacaggatga 5721808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 67 - 229
Target Start/End: Complemental strand, 19861286 - 19861124
Alignment:
Q  67 gatgacagtcagtcattcactatttttagagtctttttcatgatattttgagttcacaagcaagtttaaacaacaaagaaaacnnnnnnnntagaagatt 166  Q
    |||| ||| |||||||||||| ||||||| ||| |||||||||||||||||||||||||||||| ||||||| |||||||| |        || ||||||    
T  19861286 gatggcagacagtcattcactgtttttagtgtcattttcatgatattttgagttcacaagcaagcttaaacagcaaagaaagcaagaaaaatataagatt 19861187  T
Q  167 tcgaagaaagcaaaatcgtgtcacgattgttgaaaacgtggcacgatttggagcacaggatga 229  Q
    | ||||||  |||||| ||||||||||||||||||||||  ||||||||||||||||||||||    
T  19861186 ttgaagaacacaaaattgtgtcacgattgttgaaaacgtatcacgatttggagcacaggatga 19861124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 66 - 215
Target Start/End: Original strand, 12237354 - 12237503
Alignment:
Q  66 tgatgacagtcagtcattcactatttttagagtctttttcatgatattttgagttcacaagcaagtttaaacaacaaagaaaacnnnnnnnntagaagat 165  Q
    |||||| ||||| ||||||||| ||||||| ||| |||||||||||||||||||||||||||||| |||||||||||||||| |        ||||||||    
T  12237354 tgatgatagtcattcattcactgtttttagtgtcattttcatgatattttgagttcacaagcaagcttaaacaacaaagaaagcaagagaaatagaagat 12237453  T
Q  166 ttcgaagaaagcaaaatcgtgtcacgattgttgaaaacgtggcacgattt 215  Q
    || |||||||||||||||||||||||||||| ||||| ||| ||| ||||    
T  12237454 tttgaagaaagcaaaatcgtgtcacgattgtcgaaaatgtgtcacaattt 12237503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 66 - 194
Target Start/End: Complemental strand, 37104241 - 37104113
Alignment:
Q  66 tgatgacagtcagtcattcactatttttagagtctttttcatgatattttgagttcacaagcaagtttaaacaacaaagaaaacnnnnnnnntagaagat 165  Q
    |||||||| ||||||||||||| | |||||  || |||||||||||||||||||||||||||||| ||||||| ||||||||||        ||||||||    
T  37104241 tgatgacactcagtcattcactgtgtttagtatcattttcatgatattttgagttcacaagcaagcttaaacagcaaagaaaacaagaaaaatagaagat 37104142  T
Q  166 ttcgaagaaagcaaaatcgtgtcacgatt 194  Q
    || ||||||||||||||||||||||||||    
T  37104141 tttgaagaaagcaaaatcgtgtcacgatt 37104113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 64 - 221
Target Start/End: Original strand, 5680467 - 5680624
Alignment:
Q  64 tatgatgacagtcagtcattcactatttttagagtctttttcatgatatttt-gagttcacaagcaagtttaaacaacaaagaaaacnnnnnnnntagaa 162  Q
    ||||||||||| | |||||||   ||||||||||||||||| |||||||||| ||||||| ||||||| |||||||||||  ||| |        |||||    
T  5680467 tatgatgacagactgtcattccacatttttagagtcttttt-atgatatttttgagttcataagcaagcttaaacaacaagaaaagcaagaaaaatagaa 5680565  T
Q  163 gatttcgaagaaagcaaaatcgtgtcacgattgttgaaaacgtggcacgatttggagca 221  Q
    ||||| ||| ||||||||||| |||||||||||||||||||||| ||| |||| |||||    
T  5680566 gattttgaaaaaagcaaaatcatgtcacgattgttgaaaacgtgtcacaatttagagca 5680624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 103 - 229
Target Start/End: Original strand, 53093758 - 53093884
Alignment:
Q  103 ttcatgatattttgagttcacaagcaagtttaaacaacaaagaaaacnnnnnnnntagaagatttcgaagaaagcaaaatcgtgtcacgattgttgaaaa 202  Q
    |||||| | ||||||||||||||||||| ||||||| ||| |||| |        | |||||||| |||||||| ||||||||| |||||||||||||||    
T  53093758 ttcatggtcttttgagttcacaagcaagcttaaacagcaaggaaagcatgaaaagttgaagattttgaagaaagtaaaatcgtgacacgattgttgaaaa 53093857  T
Q  203 cgtggcacgatttggagcacaggatga 229  Q
    |||| ||||| ||||||||||||||||    
T  53093858 cgtgtcacgaattggagcacaggatga 53093884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 66 - 147
Target Start/End: Original strand, 56198029 - 56198110
Alignment:
Q  66 tgatgacagtcagtcattcactatttttagagtctttttcatgatattttgagttcacaagcaagtttaaacaacaaagaaa 147  Q
    |||||||||||||||||||  ||||||||| ||| |||||||||| ||||||||||||||||||| ||||||||||| ||||    
T  56198029 tgatgacagtcagtcattcgttatttttagtgtcattttcatgatgttttgagttcacaagcaagcttaaacaacaaggaaa 56198110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 65 - 135
Target Start/End: Original strand, 44164000 - 44164071
Alignment:
Q  65 atgatgacagtcagtcattcactatttttagagtctttttcatgata-ttttgagttcacaagcaagtttaa 135  Q
    |||||||||||||||||||||||||||||| ||||||||| |||||| ||||||||||||||||||| ||||    
T  44164000 atgatgacagtcagtcattcactatttttaaagtcttttttatgatatttttgagttcacaagcaagattaa 44164071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 66 - 216
Target Start/End: Original strand, 49269735 - 49269885
Alignment:
Q  66 tgatgacagtcagtcattcactatttttagagtctttttcatgatatttt-gagttcacaagcaagtttaaacaacaaagaaaacnnnnnnnntagaaga 164  Q
    ||||||||||||||||||    ||||||||||| ||||| |||||||||| |||||  ||| |||| ||||||  |||||||| |        |||||||    
T  49269735 tgatgacagtcagtcattttacatttttagagttttttt-atgatatttttgagttagcaaacaagcttaaacggcaaagaaagcaagaaaaatagaaga 49269833  T
Q  165 tttcgaagaaagcaaaatcgtgtcacgattgttgaaaacgtggcacgatttg 216  Q
    ||| ||||||||||||||||| |||||||||||||||||||| |||||||||    
T  49269834 ttttgaagaaagcaaaatcgtatcacgattgttgaaaacgtgtcacgatttg 49269885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 66 - 147
Target Start/End: Original strand, 29323979 - 29324060
Alignment:
Q  66 tgatgacagtcagtcattcactatttttagagtctttttcatgat-attttgagttcacaagcaagtttaaacaacaaagaaa 147  Q
    ||||||||||||||||||  ||||||||||||||||||| ||||| |||||||||||||||||||| ||||||||||| ||||    
T  29323979 tgatgacagtcagtcatttgctatttttagagtcttttt-atgataattttgagttcacaagcaagcttaaacaacaaggaaa 29324060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 66 - 147
Target Start/End: Complemental strand, 44809904 - 44809823
Alignment:
Q  66 tgatgacagtcagtcattcactatttttagagtctttttcatgat-attttgagttcacaagcaagtttaaacaacaaagaaa 147  Q
    ||||||||||||||||||  ||||||||||||||||||| ||||| |||||||||||||||||||| ||||||||||| ||||    
T  44809904 tgatgacagtcagtcatttgctatttttagagtcttttt-atgataattttgagttcacaagcaagcttaaacaacaaggaaa 44809823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 65 - 142
Target Start/End: Complemental strand, 15405899 - 15405822
Alignment:
Q  65 atgatgacagtcagtcattcactatttttagagtctttttcatgatattttgagttcacaagcaagtttaaacaacaa 142  Q
    ||||||| ||||||||||||  ||||||||| ||| |||||||||| ||||||||||||||||||| |||||||||||    
T  15405899 atgatgaaagtcagtcattctttatttttagtgtcattttcatgatgttttgagttcacaagcaagcttaaacaacaa 15405822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 66 - 142
Target Start/End: Original strand, 27013229 - 27013306
Alignment:
Q  66 tgatgacagtcagtcattcactatttttagagtctttttcatgata-ttttgagttcacaagcaagtttaaacaacaa 142  Q
    ||||||||||||||||||| ||||||||||||||||||| |||||| ||||||||||||| ||||| |||| ||||||    
T  27013229 tgatgacagtcagtcattcgctatttttagagtcttttttatgatatttttgagttcacaggcaagcttaagcaacaa 27013306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 66 - 147
Target Start/End: Original strand, 56194722 - 56194803
Alignment:
Q  66 tgatgacagtcagtcattcactatttttagagtctttttcatgatattttgagttcacaagcaagtttaaacaacaaagaaa 147  Q
    |||||||||||| ||||||  ||||||||| ||| |||||||||| ||||||||||||||||||| ||||||||||| ||||    
T  56194722 tgatgacagtcaatcattcgttatttttagtgtcattttcatgatgttttgagttcacaagcaagcttaaacaacaaggaaa 56194803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 66 - 149
Target Start/End: Original strand, 47114776 - 47114859
Alignment:
Q  66 tgatgacagtcagtcattcactatttttagagtctttttcatgatattttgagttcacaagcaagtttaaacaacaaagaaaac 149  Q
    |||||||||||||||||||  ||||||||| ||| ||||||| || ||||||||||||||||||| |||||||| || ||||||    
T  47114776 tgatgacagtcagtcattctttatttttagtgtcattttcattatgttttgagttcacaagcaagcttaaacaataaggaaaac 47114859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 66 - 135
Target Start/End: Complemental strand, 27677966 - 27677896
Alignment:
Q  66 tgatgacagtcagtcattcactatttttagagtctttttcatgata-ttttgagttcacaagcaagtttaa 135  Q
    |||||||||||||| |||||||||||||||||||||||| |||||| |||||||||||||| |||| ||||    
T  27677966 tgatgacagtcagttattcactatttttagagtcttttttatgatatttttgagttcacaatcaagattaa 27677896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 66 - 142
Target Start/End: Original strand, 3718336 - 3718412
Alignment:
Q  66 tgatgacagtcagtcattcactatttttagagtctttttcatgata-ttttgagttcacaagcaagtttaaacaacaa 142  Q
    |||||||||||| |||||||||||||||||||| ||||| |||||| ||||||||||||||||||| |||| ||||||    
T  3718336 tgatgacagtcactcattcactatttttagagtattttt-atgatatttttgagttcacaagcaagcttaagcaacaa 3718412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 158 - 229
Target Start/End: Complemental strand, 40617720 - 40617649
Alignment:
Q  158 tagaagatttcgaagaaagcaaaatcgtgtcacgattgttgaaaacgtggcacgatttggagcacaggatga 229  Q
    |||||||||| |||||| ||||||||||| ||||||||||||||||||| |||||||| || |||| |||||    
T  40617720 tagaagattttgaagaaggcaaaatcgtgccacgattgttgaaaacgtgtcacgatttagaacacaagatga 40617649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 66 - 135
Target Start/End: Complemental strand, 15430766 - 15430696
Alignment:
Q  66 tgatgacagtcagtcattcactatttttagagtctttttcatgata-ttttgagttcacaagcaagtttaa 135  Q
    |||||||||||||||||||  |||||| ||||||||||| |||||| ||||||||||||||||||| ||||    
T  15430766 tgatgacagtcagtcattcgttattttcagagtcttttttatgatatttttgagttcacaagcaagcttaa 15430696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 66 - 135
Target Start/End: Complemental strand, 15437380 - 15437310
Alignment:
Q  66 tgatgacagtcagtcattcactatttttagagtctttttcatgata-ttttgagttcacaagcaagtttaa 135  Q
    |||||||||||||||||||  |||||| ||||||||||| |||||| ||||||||||||||||||| ||||    
T  15437380 tgatgacagtcagtcattcgttattttcagagtcttttttatgatatttttgagttcacaagcaagcttaa 15437310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 66 - 135
Target Start/End: Complemental strand, 52007431 - 52007362
Alignment:
Q  66 tgatgacagtcagtcattcactatttttagagtctttttcatgatatt-ttgagttcacaagcaagtttaa 135  Q
    ||||||||||||||||||| ||||||||||||||||||| |||||||| ||||||||| ||||||| ||||    
T  52007431 tgatgacagtcagtcattcgctatttttagagtcttttt-atgatattgttgagttcaaaagcaagcttaa 52007362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 71 - 139
Target Start/End: Complemental strand, 34320839 - 34320771
Alignment:
Q  71 acagtcagtcattcactatttttagagtctttttcatgat-attttgagttcacaagcaagtttaaacaa 139  Q
    |||||||||||||  ||||||||||||||||||| ||||| |||||||||||||||||||| ||||||||    
T  34320839 acagtcagtcatttgctatttttagagtcttttt-atgataattttgagttcacaagcaagcttaaacaa 34320771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 66 - 135
Target Start/End: Original strand, 19819950 - 19820020
Alignment:
Q  66 tgatgacagtcagtcattcactatttttagagtctttttcatgata--ttttgagttcacaagcaagtttaa 135  Q
    ||||||||||||||||||| ||||||||| ||||||||| ||||||  ||||||||||||||||||| ||||    
T  19819950 tgatgacagtcagtcattcgctatttttaaagtcttttt-atgatattttttgagttcacaagcaagattaa 19820020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 66 - 142
Target Start/End: Original strand, 19826701 - 19826778
Alignment:
Q  66 tgatgacagtcagtcattcactatttttagagtctttttcatg--atattttgagttcacaagcaagtttaaacaacaa 142  Q
    ||||||||||||||||||| ||||||||||||||||||| |||  || ||||||||||||||| ||| |||| ||||||    
T  19826701 tgatgacagtcagtcattcgctatttttagagtcttttt-atgaaattttttgagttcacaagtaagattaagcaacaa 19826778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 66 - 135
Target Start/End: Original strand, 12782106 - 12782175
Alignment:
Q  66 tgatgacagtcagtcattcactatttttagagtctttttcatgata-ttttgagttcacaagcaagtttaa 135  Q
    ||||||||||||||||||| |||||||||||||| |||| |||||| ||||||||| ||||||||| ||||    
T  12782106 tgatgacagtcagtcattcgctatttttagagtcatttt-atgatatttttgagtttacaagcaagcttaa 12782175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 66 - 135
Target Start/End: Complemental strand, 27692025 - 27691955
Alignment:
Q  66 tgatgacagtcagtcattcactatttttagagtctttttcatgata-ttttgagttcacaagcaagtttaa 135  Q
    |||||||| | |||||||||||||||||||||||||||| | |||| |||||| |||||||||||| ||||    
T  27692025 tgatgacaattagtcattcactatttttagagtcttttttacgatatttttgaattcacaagcaagattaa 27691955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #35
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 74 - 135
Target Start/End: Original strand, 40794200 - 40794261
Alignment:
Q  74 gtcagtcattcactatttttagagtctttttcatgata-ttttgagttcacaagcaagtttaa 135  Q
    ||||||||||| ||||||||||||||||||| |||||| ||||||||||||||||||| ||||    
T  40794200 gtcagtcattcgctatttttagagtcttttt-atgatatttttgagttcacaagcaagcttaa 40794261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #36
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 66 - 135
Target Start/End: Complemental strand, 53010458 - 53010389
Alignment:
Q  66 tgatgacagtcagtcattcactatttttagagtctttttcatgata-ttttgagttcacaagcaagtttaa 135  Q
    |||||| ||||||||||||| |||||||||||||||||| |||||| ||||||||||||||| ||| ||||    
T  53010458 tgatgatagtcagtcattcattatttttagagtcttttt-atgatatttttgagttcacaagtaagattaa 53010389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #37
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 66 - 147
Target Start/End: Original strand, 33926121 - 33926202
Alignment:
Q  66 tgatgacagtcagtcattcactatttttagagtctttttcatgatattttgagttcacaagcaagtttaaacaacaaagaaa 147  Q
    ||||||||||||||||||   || |||||| ||| ||| |||||| | ||||||||||||||||| ||||||||||| ||||    
T  33926121 tgatgacagtcagtcatttgttacttttagtgtcatttgcatgatgtcttgagttcacaagcaagcttaaacaacaaggaaa 33926202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #38
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 74 - 135
Target Start/End: Original strand, 21418987 - 21419048
Alignment:
Q  74 gtcagtcattcactatttttagagtctttttcatgata-ttttgagttcacaagcaagtttaa 135  Q
    ||||||||||| |||||||||| |||||||| |||||| ||||||||||||||||||| ||||    
T  21418987 gtcagtcattcgctatttttagtgtcttttt-atgatatttttgagttcacaagcaagcttaa 21419048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #39
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 66 - 135
Target Start/End: Complemental strand, 24045057 - 24044988
Alignment:
Q  66 tgatgacagtcagtcattcactatttttagagtctttttcatgata-ttttgagttcacaagcaagtttaa 135  Q
    |||||||||||||||||||  ||||||||||||||||||  ||||| |||||||||||||| |||| ||||    
T  24045057 tgatgacagtcagtcattcgttatttttagagtcttttt-ttgatatttttgagttcacaaacaagattaa 24044988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #40
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 66 - 104
Target Start/End: Complemental strand, 38284415 - 38284377
Alignment:
Q  66 tgatgacagtcagtcattcactatttttagagtcttttt 104  Q
    ||||||||||||||||||| |||||||||||||||||||    
T  38284415 tgatgacagtcagtcattcgctatttttagagtcttttt 38284377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #41
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 107 - 147
Target Start/End: Complemental strand, 15813041 - 15813001
Alignment:
Q  107 tgatattttgagttcacaagcaagtttaaacaacaaagaaa 147  Q
    |||| ||||||||||||||||||||||||||||||| ||||    
T  15813041 tgatgttttgagttcacaagcaagtttaaacaacaaggaaa 15813001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #42
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 65 - 104
Target Start/End: Original strand, 10384775 - 10384814
Alignment:
Q  65 atgatgacagtcagtcattcactatttttagagtcttttt 104  Q
    |||||||||||||||||| ||||||||||| |||||||||    
T  10384775 atgatgacagtcagtcatacactatttttatagtcttttt 10384814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #43
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 66 - 184
Target Start/End: Original strand, 14571026 - 14571144
Alignment:
Q  66 tgatgacagtcagtcattcactatttttagagtctttttcatgatatttt-gagttcacaagcaagtttaaacaacaaagaaaacnnnnnnnntagaaga 164  Q
    ||||||| ||| |||||||   ||||||||||||||||| |||||||||| ||||||||||||||| |||| || |||  ||| |        |||||||    
T  14571026 tgatgacggtctgtcattccacatttttagagtcttttt-atgatatttttgagttcacaagcaagcttaagcagcaagaaaagcaagaaaaatagaaga 14571124  T
Q  165 tttcgaagaaagcaaaatcg 184  Q
    ||| ||||||||||||||||    
T  14571125 ttttgaagaaagcaaaatcg 14571144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #44
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 66 - 104
Target Start/End: Complemental strand, 11706584 - 11706546
Alignment:
Q  66 tgatgacagtcagtcattcactatttttagagtcttttt 104  Q
    |||| |||||||||||||||||||||||||||| |||||    
T  11706584 tgataacagtcagtcattcactatttttagagttttttt 11706546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #45
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 66 - 104
Target Start/End: Original strand, 17669447 - 17669485
Alignment:
Q  66 tgatgacagtcagtcattcactatttttagagtcttttt 104  Q
    ||||||||||||||||||||||||||||| |||| ||||    
T  17669447 tgatgacagtcagtcattcactatttttaaagtcatttt 17669485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #46
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 66 - 104
Target Start/End: Complemental strand, 34018699 - 34018661
Alignment:
Q  66 tgatgacagtcagtcattcactatttttagagtcttttt 104  Q
    ||||||||||| ||||||| |||||||||||||||||||    
T  34018699 tgatgacagtccgtcattcgctatttttagagtcttttt 34018661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #47
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 66 - 104
Target Start/End: Complemental strand, 48416448 - 48416410
Alignment:
Q  66 tgatgacagtcagtcattcactatttttagagtcttttt 104  Q
    ||||||||||| ||||||| |||||||||||||||||||    
T  48416448 tgatgacagtccgtcattcgctatttttagagtcttttt 48416410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 120; Significance: 2e-61; HSPs: 37)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 66 - 229
Target Start/End: Original strand, 538015 - 538178
Alignment:
Q  66 tgatgacagtcagtcattcactatttttagagtctttttcatgatattttgagttcacaagcaagtttaaacaacaaagaaaacnnnnnnnntagaagat 165  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||        ||||||||    
T  538015 tgatgacagtcagtcattcactatttttagagtctttttcatgatattttgagttcacaaacaagtttaaacagcaaagaaaacaagaaaaatagaagat 538114  T
Q  166 ttcgaagaaagcaaaatcgtgtcacgattgttgaaaacgtggcacgatttggagcacaggatga 229  Q
    || |||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||    
T  538115 tttgaagaaagcaaaatcgtgtcacgattgttgaaaacgtgtcacgatttggagcacagaatga 538178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 118; E-Value: 3e-60
Query Start/End: Original strand, 66 - 227
Target Start/End: Original strand, 10884018 - 10884179
Alignment:
Q  66 tgatgacagtcagtcattcactatttttagagtctttttcatgatattttgagttcacaagcaagtttaaacaacaaagaaaacnnnnnnnntagaagat 165  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||        ||||||||    
T  10884018 tgatgacagtcagtcattcactatttttagagtctttttcatgatattttgagttcacaagcaagtttaaacagcaatgaaaacaaaaaaaatagaagat 10884117  T
Q  166 ttcgaagaaagcaaaatcgtgtcacgattgttgaaaacgtggcacgatttggagcacaggat 227  Q
    |||||||||||||||||||||||||||||||||||||| || ||||||||| ||||||||||    
T  10884118 ttcgaagaaagcaaaatcgtgtcacgattgttgaaaacctgtcacgatttgaagcacaggat 10884179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 116; E-Value: 4e-59
Query Start/End: Original strand, 66 - 229
Target Start/End: Complemental strand, 23299553 - 23299390
Alignment:
Q  66 tgatgacagtcagtcattcactatttttagagtctttttcatgatattttgagttcacaagcaagtttaaacaacaaagaaaacnnnnnnnntagaagat 165  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||        ||||||||    
T  23299553 tgatgacagtcagtcattcactatttttagagtctttttcatgatattttgagttcacaagcaagtttaaacagcaaagaaaacaagagaaatagaagat 23299454  T
Q  166 ttcgaagaaagcaaaatcgtgtcacgattgttgaaaacgtggcacgatttggagcacaggatga 229  Q
    || |||||||||||||||||||||||||||| ||||||||| ||| |||||||||||| |||||    
T  23299453 tttgaagaaagcaaaatcgtgtcacgattgtcgaaaacgtgtcacaatttggagcacaagatga 23299390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 66 - 229
Target Start/End: Original strand, 6921890 - 6922053
Alignment:
Q  66 tgatgacagtcagtcattcactatttttagagtctttttcatgatattttgagttcacaagcaagtttaaacaacaaagaaaacnnnnnnnntagaagat 165  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||        || |||||    
T  6921890 tgatgacagtcagtcattcactatttttagagcctttttcatgatattttgagttcacaagcaagtttaaacagcaaagaaaacaagagaaatataagat 6921989  T
Q  166 ttcgaagaaagcaaaatcgtgtcacgattgttgaaaacgtggcacgatttggagcacaggatga 229  Q
    || |||||||||||||||||||||||||||| ||||||||| |||||||||||||||| |||||    
T  6921990 tttgaagaaagcaaaatcgtgtcacgattgtcgaaaacgtgtcacgatttggagcacatgatga 6922053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 66 - 229
Target Start/End: Original strand, 52198305 - 52198468
Alignment:
Q  66 tgatgacagtcagtcattcactatttttagagtctttttcatgatattttgagttcacaagcaagtttaaacaacaaagaaaacnnnnnnnntagaagat 165  Q
    |||||||||||||||||||||||| ||||| ||| |||||||||||||||||||||||||||||| |||||||||||||||| |        ||||||||    
T  52198305 tgatgacagtcagtcattcactatgtttagtgtcattttcatgatattttgagttcacaagcaagcttaaacaacaaagaaagcaagaaaaatagaagat 52198404  T
Q  166 ttcgaagaaagcaaaatcgtgtcacgattgttgaaaacgtggcacgatttggagcacaggatga 229  Q
    || ||||||||||||||| |||||||||||||||||||||| |||||||| ||||||| |||||    
T  52198405 tttgaagaaagcaaaatcatgtcacgattgttgaaaacgtgtcacgatttagagcacatgatga 52198468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 92; E-Value: 8e-45
Query Start/End: Original strand, 66 - 229
Target Start/End: Complemental strand, 18645741 - 18645578
Alignment:
Q  66 tgatgacagtcagtcattcactatttttagagtctttttcatgatattttgagttcacaagcaagtttaaacaacaaagaaaacnnnnnnnntagaagat 165  Q
    |||||||| ||||||||||||| ||||||| ||| ||||||||||||||  ||||||||| |||| ||||||| ||||||||||        ||||||||    
T  18645741 tgatgacaatcagtcattcactgtttttagtgtcattttcatgatatttcaagttcacaaacaagcttaaacagcaaagaaaacaagaaaaatagaagat 18645642  T
Q  166 ttcgaagaaagcaaaatcgtgtcacgattgttgaaaacgtggcacgatttggagcacaggatga 229  Q
    || |||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||    
T  18645641 tttgaagaaagcaaaatcgtgtcacgattgttgaaaacgtgtcacgatttgaagcacaggatga 18645578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 65 - 191
Target Start/End: Complemental strand, 10107615 - 10107489
Alignment:
Q  65 atgatgacagtcagtcattcactatttttagagtctttttcatgatattttgagttcacaagcaagtttaaacaacaaagaaaacnnnnnnnntagaaga 164  Q
    ||||||||||||||||||||||| ||||||| ||| |||||||||||||||||||||||||||||| ||||||||||||||||||        |||||||    
T  10107615 atgatgacagtcagtcattcactgtttttagtgtcattttcatgatattttgagttcacaagcaagcttaaacaacaaagaaaacaagaaaaatagaaga 10107516  T
Q  165 tttcgaagaaagcaaaatcgtgtcacg 191  Q
    ||| |||||||||||||||||||||||    
T  10107515 ttttgaagaaagcaaaatcgtgtcacg 10107489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 66 - 149
Target Start/End: Complemental strand, 17532669 - 17532586
Alignment:
Q  66 tgatgacagtcagtcattcactatttttagagtctttttcatgatattttgagttcacaagcaagtttaaacaacaaagaaaac 149  Q
    |||| ||||||||||||||||| ||||||| ||| |||||||||||||||||||||||||||||| ||||||||||||||||||    
T  17532669 tgattacagtcagtcattcactgtttttagtgtcattttcatgatattttgagttcacaagcaagcttaaacaacaaagaaaac 17532586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 63 - 229
Target Start/End: Original strand, 35411673 - 35411840
Alignment:
Q  63 ttatgatgacagtcagtcatt-cactatttttagagtctttttcatgatatttt-gagttcacaagcaagtttaaacaacaaagaaaacnnnnnnnn-ta 159  Q
    |||||||||||||| |||||| ||  ||||||||||||||||| |||||||||| ||||||||||||||  |||| || ||| ||||||         ||    
T  35411673 ttatgatgacagtctgtcatttcaacatttttagagtcttttt-atgatatttttgagttcacaagcaaacttaagcagcaa-gaaaacaaagaaaaata 35411770  T
Q  160 gaagatttcgaagaaagcaaaatcgtgtcacgattgttgaaaacgtggcacgatttggagcacaggatga 229  Q
    |||||||| |||||||||||||||||||||||||||| ||||||||| ||||||||||| ||||||||||    
T  35411771 gaagattttgaagaaagcaaaatcgtgtcacgattgtcgaaaacgtgtcacgatttggaacacaggatga 35411840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 66 - 229
Target Start/End: Complemental strand, 16185656 - 16185493
Alignment:
Q  66 tgatgacagtcagtcattcactatttttagagtctttttcatgatatttt-gagttcacaagcaagtttaaacaacaaagaaaacnnnnnnnntagaaga 164  Q
    ||||||||||| |||||||   ||||||||||||||||| |||||||||| |||||||||| |||| |||| || |||  ||| |        || ||||    
T  16185656 tgatgacagtctgtcattccacatttttagagtcttttt-atgatatttttgagttcacaaacaagcttaagcagcaagaaaagcaagaaaaatataaga 16185558  T
Q  165 tttcgaagaaagcaaaatcgtgtcacgattgttgaaaacgtggcacgatttggagcacaggatga 229  Q
    ||| ||||||||||||||||||||||||||||||||||| || |||| ||| |||||||||||||    
T  16185557 ttttgaagaaagcaaaatcgtgtcacgattgttgaaaacatgtcacgttttagagcacaggatga 16185493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 66 - 135
Target Start/End: Complemental strand, 29344773 - 29344703
Alignment:
Q  66 tgatgacagtcagtcattcactatttttagagtctttttcatgata-ttttgagttcacaagcaagtttaa 135  Q
    ||||||||||||||||||||||||||||||||||||| | |||||| ||||||||||||||||||| ||||    
T  29344773 tgatgacagtcagtcattcactatttttagagtctttcttatgatatttttgagttcacaagcaagattaa 29344703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 66 - 135
Target Start/End: Original strand, 53814971 - 53815040
Alignment:
Q  66 tgatgacagtcagtcattcactatttttagagtctttttcatgata-ttttgagttcacaagcaagtttaa 135  Q
    ||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||| ||||    
T  53814971 tgatgacagtcagtcattcactatttttagagtcttttt-atgatatttttgagttcacaagcaagcttaa 53815040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 66 - 142
Target Start/End: Original strand, 54460367 - 54460443
Alignment:
Q  66 tgatgacagtcagtcattcactatttttagagtctttttcatgata-ttttgagttcacaagcaagtttaaacaacaa 142  Q
    ||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||  |||| ||||||    
T  54460367 tgatgacagtcagtcattcactatttttagagtcttttt-atgatatttttgagttcacaagcaatcttaagcaacaa 54460443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 67 - 135
Target Start/End: Original strand, 9380012 - 9380080
Alignment:
Q  67 gatgacagtcagtcattcactatttttagagtctttttcatgata-ttttgagttcacaagcaagtttaa 135  Q
    |||||||||||||||||| ||||||||||||||||||| |||||| ||||||||||||||||||| ||||    
T  9380012 gatgacagtcagtcattcgctatttttagagtcttttt-atgatatttttgagttcacaagcaagcttaa 9380080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 66 - 142
Target Start/End: Complemental strand, 34984758 - 34984682
Alignment:
Q  66 tgatgacagtcagtcattcactatttttagagtctttttcatgata-ttttgagttcacaagcaagtttaaacaacaa 142  Q
    |||||||||||||||||||  |||||||||||||||||| |||||| ||||||||||||||||||| |||| ||||||    
T  34984758 tgatgacagtcagtcattcgttatttttagagtcttttt-atgatatttttgagttcacaagcaagattaagcaacaa 34984682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 66 - 135
Target Start/End: Original strand, 16243166 - 16243235
Alignment:
Q  66 tgatgacagtcagtcattcactatttttagagtctttttcatgata-ttttgagttcacaagcaagtttaa 135  Q
    |||||||| |||||||||| ||||||||||||||||||| |||||| ||||||||||||||||||| ||||    
T  16243166 tgatgacaatcagtcattcgctatttttagagtcttttt-atgatatttttgagttcacaagcaagattaa 16243235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 66 - 135
Target Start/End: Complemental strand, 20729477 - 20729407
Alignment:
Q  66 tgatgacagtcagtcattcactatttttagagtctttttcatgata-ttttgagttcacaagcaagtttaa 135  Q
    ||||||||||||||||||| ||||||||||||| ||||| |||||| |||| |||||||||||||| ||||    
T  20729477 tgatgacagtcagtcattcgctatttttagagttttttttatgatattttttagttcacaagcaagcttaa 20729407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 65 - 138
Target Start/End: Original strand, 41976320 - 41976393
Alignment:
Q  65 atgatgacagtcagtcattcactatttttagagtctttttcatgata-ttttgagttcacaagcaagtttaaaca 138  Q
    |||||||||||||||||||| ||||||||||||| ||||| || ||| ||||||||||||||||||| |||||||    
T  41976320 atgatgacagtcagtcattcgctatttttagagtgttttt-ataatatttttgagttcacaagcaagattaaaca 41976393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 66 - 135
Target Start/End: Original strand, 3839790 - 3839862
Alignment:
Q  66 tgatgacagtcagtcattcactatttttagag--tctttttcatgata-ttttgagttcacaagcaagtttaa 135  Q
    ||||||||||||||||||||||||||||||||  | ||||| |||||| ||||||||||||||||||| ||||    
T  3839790 tgatgacagtcagtcattcactatttttagagtttttttttaatgatatttttgagttcacaagcaagcttaa 3839862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 74 - 142
Target Start/End: Complemental strand, 54736842 - 54736774
Alignment:
Q  74 gtcagtcattcactatttttagagtctttttcatgata-ttttgagttcacaagcaagtttaaacaacaa 142  Q
    |||| |||||||||||||||||||||||||| |||||| ||||||||||||||||||| |||| ||||||    
T  54736842 gtcaatcattcactatttttagagtcttttt-atgatacttttgagttcacaagcaagcttaagcaacaa 54736774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 178 - 229
Target Start/End: Original strand, 9380143 - 9380194
Alignment:
Q  178 aaaatcgtgtcacgattgttgaaaacgtggcacgatttggagcacaggatga 229  Q
    |||||||||||||| |||||||||||||| |||||||| |||||||||||||    
T  9380143 aaaatcgtgtcacggttgttgaaaacgtgtcacgatttagagcacaggatga 9380194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 66 - 135
Target Start/End: Original strand, 10880776 - 10880845
Alignment:
Q  66 tgatgacagtcagtcattcactatttttagagtctttttcatgata-ttttgagttcacaagcaagtttaa 135  Q
    |||||||||||||| |||  ||||||||||||||||||| |||||| ||||||||||||||||||| ||||    
T  10880776 tgatgacagtcagttatttgctatttttagagtcttttt-atgatatttttgagttcacaagcaagattaa 10880845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 66 - 147
Target Start/End: Complemental strand, 19302364 - 19302283
Alignment:
Q  66 tgatgacagtcagtcattcactatttttagagtctttttcatgatatttt-gagttcacaagcaagtttaaacaacaaagaaa 147  Q
    |||||| |||| ||||||   |||||||||||||||||| |||||||||| ||||||||||||||| ||||||||||| ||||    
T  19302364 tgatgatagtccgtcatttcatatttttagagtcttttt-atgatatttttgagttcacaagcaagcttaaacaacaaggaaa 19302283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 66 - 102
Target Start/End: Original strand, 31857055 - 31857091
Alignment:
Q  66 tgatgacagtcagtcattcactatttttagagtcttt 102  Q
    |||||||||||||||||||||||||||||||||||||    
T  31857055 tgatgacagtcagtcattcactatttttagagtcttt 31857091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 65 - 104
Target Start/End: Complemental strand, 2280780 - 2280741
Alignment:
Q  65 atgatgacagtcagtcattcactatttttagagtcttttt 104  Q
    |||||||||||||||||| |||||||||||||||||||||    
T  2280780 atgatgacagtcagtcatgcactatttttagagtcttttt 2280741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 66 - 104
Target Start/End: Original strand, 9157508 - 9157546
Alignment:
Q  66 tgatgacagtcagtcattcactatttttagagtcttttt 104  Q
    ||||||||||||||||| |||||||||||||||||||||    
T  9157508 tgatgacagtcagtcatgcactatttttagagtcttttt 9157546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 66 - 104
Target Start/End: Complemental strand, 42355336 - 42355298
Alignment:
Q  66 tgatgacagtcagtcattcactatttttagagtcttttt 104  Q
    ||||||||||||||||||||||||||||||||| |||||    
T  42355336 tgatgacagtcagtcattcactatttttagagttttttt 42355298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 66 - 104
Target Start/End: Complemental strand, 50462455 - 50462417
Alignment:
Q  66 tgatgacagtcagtcattcactatttttagagtcttttt 104  Q
    ||||||||||| |||||||||||||||||||||||||||    
T  50462455 tgatgacagtccgtcattcactatttttagagtcttttt 50462417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 158 - 194
Target Start/End: Complemental strand, 55032825 - 55032789
Alignment:
Q  158 tagaagatttcgaagaaagcaaaatcgtgtcacgatt 194  Q
    |||||||||| ||||||||||||||||||||||||||    
T  55032825 tagaagattttgaagaaagcaaaatcgtgtcacgatt 55032789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 69 - 135
Target Start/End: Original strand, 43808881 - 43808947
Alignment:
Q  69 tgacagtcagtcattcactatttttagagtctttttcatgata-ttttgagttcacaagcaagtttaa 135  Q
    ||||||| ||| ||||  |||||||||||||||||| |||||| ||||||||||||||||||| ||||    
T  43808881 tgacagttagttattcgttatttttagagtcttttt-atgatatttttgagttcacaagcaagattaa 43808947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 65 - 104
Target Start/End: Original strand, 43926123 - 43926162
Alignment:
Q  65 atgatgacagtcagtcattcactatttttagagtcttttt 104  Q
    |||||||||||| ||||||| |||||||||||||||||||    
T  43926123 atgatgacagtccgtcattcgctatttttagagtcttttt 43926162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 66 - 104
Target Start/End: Original strand, 10962428 - 10962466
Alignment:
Q  66 tgatgacagtcagtcattcactatttttagagtcttttt 104  Q
    ||||| |||||||||||||||||||||||||||| ||||    
T  10962428 tgatggcagtcagtcattcactatttttagagtcatttt 10962466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #33
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 66 - 104
Target Start/End: Original strand, 10965937 - 10965975
Alignment:
Q  66 tgatgacagtcagtcattcactatttttagagtcttttt 104  Q
    ||||| |||||||||||||||||||||||||||| ||||    
T  10965937 tgatggcagtcagtcattcactatttttagagtcatttt 10965975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #34
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 66 - 104
Target Start/End: Original strand, 50095816 - 50095854
Alignment:
Q  66 tgatgacagtcagtcattcactatttttagagtcttttt 104  Q
    ||||||||||||||||| |||| ||||||||||||||||    
T  50095816 tgatgacagtcagtcatacactttttttagagtcttttt 50095854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #35
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 63 - 104
Target Start/End: Original strand, 7485857 - 7485898
Alignment:
Q  63 ttatgatgacagtcagtcattcactatttttagagtcttttt 104  Q
    |||||||||||||| ||||||| |||||| ||||||||||||    
T  7485857 ttatgatgacagtccgtcattcgctatttctagagtcttttt 7485898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #36
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 87 - 147
Target Start/End: Complemental strand, 19305526 - 19305466
Alignment:
Q  87 tatttttagagtctttttcatgatatttt-gagttcacaagcaagtttaaacaacaaagaaa 147  Q
    |||||||||||||||||| || ||||||| ||||||||||||||| ||||||| ||| ||||    
T  19305526 tatttttagagtcttttt-ataatatttttgagttcacaagcaagcttaaacagcaaggaaa 19305466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #37
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 72 - 104
Target Start/End: Original strand, 10958777 - 10958809
Alignment:
Q  72 cagtcagtcattcactatttttagagtcttttt 104  Q
    |||||||||||||||||||||||||||| ||||    
T  10958777 cagtcagtcattcactatttttagagtcatttt 10958809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 120; Significance: 2e-61; HSPs: 39)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 66 - 229
Target Start/End: Original strand, 25869835 - 25869998
Alignment:
Q  66 tgatgacagtcagtcattcactatttttagagtctttttcatgatattttgagttcacaagcaagtttaaacaacaaagaaaacnnnnnnnntagaagat 165  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||        ||||||||    
T  25869835 tgatgacagtcagtcattcactatttttagagtctttttcatgatattttgagttcacaagaaagtttaaacaacaaagaaaacaagagaaatagaagat 25869934  T
Q  166 ttcgaagaaagcaaaatcgtgtcacgattgttgaaaacgtggcacgatttggagcacaggatga 229  Q
    || |||||||| ||||||||||||||||||| ||||||||| ||||||||||||||||||||||    
T  25869935 tttgaagaaagaaaaatcgtgtcacgattgtcgaaaacgtgtcacgatttggagcacaggatga 25869998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 66 - 229
Target Start/End: Original strand, 25873203 - 25873366
Alignment:
Q  66 tgatgacagtcagtcattcactatttttagagtctttttcatgatattttgagttcacaagcaagtttaaacaacaaagaaaacnnnnnnnntagaagat 165  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||        ||||||||    
T  25873203 tgatgacagtcagtcattcactatttttagagtctttttcatgatattttgagttcacaagcaagtttaaacaacaaagaaaacaagagaaatagaagat 25873302  T
Q  166 ttcgaagaaagcaaaatcgtgtcacgattgttgaaaacgtggcacgatttggagcacaggatga 229  Q
    || |||||||| ||||||||||||||||||| ||||||||| || |||||||||||||||||||    
T  25873303 tttgaagaaagaaaaatcgtgtcacgattgtcgaaaacgtgtcatgatttggagcacaggatga 25873366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 66 - 229
Target Start/End: Original strand, 26358672 - 26358835
Alignment:
Q  66 tgatgacagtcagtcattcactatttttagagtctttttcatgatattttgagttcacaagcaagtttaaacaacaaagaaaacnnnnnnnntagaagat 165  Q
    |||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||| ||||||||||| ||||||| ||        ||||||||    
T  26358672 tgatgacagtcagtcattcactatttttagtgtcattttcatgatattttgagttcacaaggaagtttaaacagcaaagaagacaagaaaaatagaagat 26358771  T
Q  166 ttcgaagaaagcaaaatcgtgtcacgattgttgaaaacgtggcacgatttggagcacaggatga 229  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26358772 ttcgaagaaagcaaaatcgtgtcacgattgttgaaaacgtggcacgatttggagcacaggatga 26358835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 66 - 229
Target Start/End: Complemental strand, 36809435 - 36809272
Alignment:
Q  66 tgatgacagtcagtcattcactatttttagagtctttttcatgatattttgagttcacaagcaagtttaaacaacaaagaaaacnnnnnnnntagaagat 165  Q
    |||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||        ||||||||    
T  36809435 tgatgacagtcagtcattcactatttttagtgtcattttcatgatattttgagttcacaagcaagtttaaacaacaaagaaaacaagaaaaatagaagat 36809336  T
Q  166 ttcgaagaaagcaaaatcgtgtcacgattgttgaaaacgtggcacgatttggagcacaggatga 229  Q
    || || ||||||||| | ||||||||||||||||||||||| ||||||||||||||||||||||    
T  36809335 tttgaggaaagcaaatttgtgtcacgattgttgaaaacgtgtcacgatttggagcacaggatga 36809272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 97; E-Value: 9e-48
Query Start/End: Original strand, 65 - 229
Target Start/End: Complemental strand, 38006287 - 38006123
Alignment:
Q  65 atgatgacagtcagtcattcactatttttagagtctttttcatgatattttgagttcacaagcaagtttaaacaacaaagaaaacnnnnnnnntagaaga 164  Q
    ||||| ||||||||||||||||| ||||||| ||| ||||||||||||||||||||||||| |||| |||||||||||||||| |        |||||||    
T  38006287 atgattacagtcagtcattcactgtttttagtgtcattttcatgatattttgagttcacaaacaagcttaaacaacaaagaaagcaagagaaatagaaga 38006188  T
Q  165 tttcgaagaaagcaaaatcgtgtcacgattgttgaaaacgtggcacgatttggagcacaggatga 229  Q
    ||| ||||||||||||||||||| |||||||| ||||||||| ||||||||||||||||||||||    
T  38006187 ttttgaagaaagcaaaatcgtgtgacgattgtcgaaaacgtgtcacgatttggagcacaggatga 38006123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 92; E-Value: 8e-45
Query Start/End: Original strand, 66 - 229
Target Start/End: Complemental strand, 30275691 - 30275528
Alignment:
Q  66 tgatgacagtcagtcattcactatttttagagtctttttcatgatattttgagttcacaagcaagtttaaacaacaaagaaaacnnnnnnnntagaagat 165  Q
    |||||| ||||||||||||| ||||||||| ||| ||||||||||||||||| ||||||| |||||||||||||||||||||||        ||||||||    
T  30275691 tgatgatagtcagtcattcaatatttttagtgtcattttcatgatattttgaattcacaaacaagtttaaacaacaaagaaaacaagaaaaatagaagat 30275592  T
Q  166 ttcgaagaaagcaaaatcgtgtcacgattgttgaaaacgtggcacgatttggagcacaggatga 229  Q
    || || ||||||||| ||||||||||||||||||||||||| |||||||||||||  |||||||    
T  30275591 tttgaggaaagcaaattcgtgtcacgattgttgaaaacgtgtcacgatttggagcgtaggatga 30275528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 63 - 194
Target Start/End: Original strand, 15466167 - 15466298
Alignment:
Q  63 ttatgatgacagtcagtcattcactatttttagagtctttttcatgatattttgagttcacaagcaagtttaaacaacaaagaaaacnnnnnnnntagaa 162  Q
    ||||||||||| ||||||||||||||||||||| ||| |||||||||||||||||||||||||||||| |||||||||||||||| |        |||||    
T  15466167 ttatgatgacaatcagtcattcactatttttagtgtcattttcatgatattttgagttcacaagcaagcttaaacaacaaagaaatcaagagaaatagaa 15466266  T
Q  163 gatttcgaagaaagcaaaatcgtgtcacgatt 194  Q
    ||||| ||||||||||||||||||||||||||    
T  15466267 gattttgaagaaagcaaaatcgtgtcacgatt 15466298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 66 - 229
Target Start/End: Complemental strand, 25821922 - 25821754
Alignment:
Q  66 tgatgacagtcagtcattcactatttttagagtctttttcatgatat----tttgagttcacaagcaagtttaaacaacaaagaaaacnnnnnnnntaga 161  Q
    |||||||||||||||||||||| ||||||| ||| ||||||||||||    |||||||||||||||||| ||||||||||||||||||        ||||    
T  25821922 tgatgacagtcagtcattcactgtttttagtgtcattttcatgatatatattttgagttcacaagcaagcttaaacaacaaagaaaacaagaaaaataga 25821823  T
Q  162 aga-tttcgaagaaagcaaaatcgtgtcacgattgttgaaaacgtggcacgatttggagcacaggatga 229  Q
    ||| ||| ||||||||||||||||||||| |||||||||||| ||| ||||||||||| ||||||||||    
T  25821822 agatttttgaagaaagcaaaatcgtgtcaagattgttgaaaaggtgtcacgatttggaacacaggatga 25821754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 64 - 229
Target Start/End: Complemental strand, 25140042 - 25139877
Alignment:
Q  64 tatgatgacagtcagtcattcactatttttagagtctttttcatgatatttt-gagttcacaagcaagtttaaacaacaaagaaaacnnnnnnnntagaa 162  Q
    |||||||||||||||||||||   | ||||||||| ||||| |||||||||| ||||||||||| ||| ||||||  |||||||| |        |||||    
T  25140042 tatgatgacagtcagtcattccacaattttagagttttttt-atgatatttttgagttcacaagtaagcttaaacggcaaagaaagcaagaaaaatagaa 25139944  T
Q  163 gatttcgaagaaagcaaaatcgtgtcacgattgttgaaaacgtggcacgatttggagcacaggatga 229  Q
    ||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||| |||||    
T  25139943 gatttcgaagaaagcaaaatcgtgtcacgattgttgacaacgtgtcacgatttggagcacaagatga 25139877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 66 - 228
Target Start/End: Original strand, 16788389 - 16788550
Alignment:
Q  66 tgatgacagtcagtcattcactatttttagagtctttttcatgata-ttttgagttcacaagcaagtttaaacaacaaagaaaacnnnnnnnntagaaga 164  Q
    ||||||||||||||||||  ||||||||||| ||||||  |||||| ||||||||||||||||||| |||| ||||||  ||| |        || ||||    
T  16788389 tgatgacagtcagtcatttgctatttttagaatctttt--atgataattttgagttcacaagcaagcttaagcaacaagaaaagcaagaaaaatataaga 16788486  T
Q  165 tttcgaagaaagcaaaatcgtgtcacgattgttgaaaacgtggcacgatttggagcacaggatg 228  Q
    ||| || ||||||| ||||||||||||||||||||||||||| |||||||| |||| |||||||    
T  16788487 ttttgatgaaagcacaatcgtgtcacgattgttgaaaacgtgtcacgatttagagcgcaggatg 16788550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 65 - 194
Target Start/End: Original strand, 29439596 - 29439723
Alignment:
Q  65 atgatgacagtcagtcattcactatttttagagtctttttcatgatattttgagttcacaagcaagtttaaacaacaaagaaaacnnnnnnnntagaaga 164  Q
    |||||||||||| |||||||  || |||||| ||| |||||||||| ||  ||||||||||||||||||||||| ||||||||||         ||||||    
T  29439596 atgatgacagtccgtcattcgttaattttagtgtcattttcatgatgtt--gagttcacaagcaagtttaaacagcaaagaaaacaagaaaaaaagaaga 29439693  T
Q  165 tttcgaagaaagcaaaatcgtgtcacgatt 194  Q
    ||||||||||||||||||||||||||||||    
T  29439694 tttcgaagaaagcaaaatcgtgtcacgatt 29439723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 64 - 147
Target Start/End: Original strand, 38014634 - 38014717
Alignment:
Q  64 tatgatgacagtcagtcattcactatttttagagtctttttcatgat-attttgagttcacaagcaagtttaaacaacaaagaaa 147  Q
    ||||||||||||||||||||  ||||||||||||||||||| ||||| |||||||||||||||||||| ||||||||||| ||||    
T  38014634 tatgatgacagtcagtcatttgctatttttagagtcttttt-atgataattttgagttcacaagcaagcttaaacaacaaggaaa 38014717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 69 - 147
Target Start/End: Complemental strand, 36985732 - 36985654
Alignment:
Q  69 tgacagtcagtcattcactatttttagagtctttttcatgatattttgagttcacaagcaagtttaaacaacaaagaaa 147  Q
    ||||||||||||||||  ||||||||| ||| |||||||||| ||||||||||||||||||| ||||||||||| ||||    
T  36985732 tgacagtcagtcattcgttatttttagtgtcattttcatgatgttttgagttcacaagcaagcttaaacaacaaggaaa 36985654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 66 - 147
Target Start/End: Original strand, 45453051 - 45453132
Alignment:
Q  66 tgatgacagtcagtcattcactatttttagagtctttttcatgatattttgagttcacaagcaagtttaaacaacaaagaaa 147  Q
    |||||||| ||||||||||  ||||||||| ||| |||||||||| ||||||||||||||||||| ||||||||||| ||||    
T  45453051 tgatgacaatcagtcattctttatttttagggtcattttcatgatgttttgagttcacaagcaagcttaaacaacaaggaaa 45453132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 66 - 147
Target Start/End: Original strand, 45456300 - 45456381
Alignment:
Q  66 tgatgacagtcagtcattcactatttttagagtctttttcatgatattttgagttcacaagcaagtttaaacaacaaagaaa 147  Q
    |||||||| |||| |||||  ||||||||| ||| |||||||||| ||||||||||||||||||| ||||||||||||||||    
T  45456300 tgatgacaatcagccattctttatttttagtgtcattttcatgatgttttgagttcacaagcaagcttaaacaacaaagaaa 45456381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 64 - 135
Target Start/End: Original strand, 10599949 - 10600020
Alignment:
Q  64 tatgatgacagtcagtcattcactatttttagagtctttttcatgata-ttttgagttcacaagcaagtttaa 135  Q
    ||||||||||||||||||||||||||||||||| ||||||| |||||| ||||||||||||||||||| ||||    
T  10599949 tatgatgacagtcagtcattcactatttttagaatcttttt-atgatatttttgagttcacaagcaagcttaa 10600020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 66 - 147
Target Start/End: Complemental strand, 31430638 - 31430557
Alignment:
Q  66 tgatgacagtcagtcattcactatttttagagtctttttcatgata-ttttgagttcacaagcaagtttaaacaacaaagaaa 147  Q
    |||||||||| |||||||  ||||||||||||||||||| |||||| ||||||||||||||||||| ||||||||||| ||||    
T  31430638 tgatgacagttagtcatttgctatttttagagtcttttt-atgataattttgagttcacaagcaagcttaaacaacaaggaaa 31430557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 66 - 135
Target Start/End: Original strand, 5665830 - 5665899
Alignment:
Q  66 tgatgacagtcagtcattcactatttttagagtctttttcatgata-ttttgagttcacaagcaagtttaa 135  Q
    |||||||||||| |||||| ||||||||||||||||||| |||||| ||||||||||||||||||| ||||    
T  5665830 tgatgacagtcaatcattcgctatttttagagtcttttt-atgatatttttgagttcacaagcaagcttaa 5665899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 66 - 135
Target Start/End: Original strand, 3874482 - 3874551
Alignment:
Q  66 tgatgacagtcagtcattcactatttttagagtctttttcatgata-ttttgagttcacaagcaagtttaa 135  Q
    |||||||||||||||||||| |||||||||||||||||| | |||| |||||||||||||| |||| ||||    
T  3874482 tgatgacagtcagtcattcattatttttagagtcttttt-aggatatttttgagttcacaaacaagattaa 3874551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 66 - 135
Target Start/End: Original strand, 43722904 - 43722973
Alignment:
Q  66 tgatgacagtcagtcattcactatttttagagtctttttcatgata-ttttgagttcacaagcaagtttaa 135  Q
    |||||||||||| ||||||  |||||||||||||||||| |||||| ||||||||||||||||||| ||||    
T  43722904 tgatgacagtcaatcattcgttatttttagagtcttttt-atgatatttttgagttcacaagcaagattaa 43722973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 66 - 135
Target Start/End: Original strand, 5104953 - 5105020
Alignment:
Q  66 tgatgacagtcagtcattcactatttttagagtctttttcatgata-ttttgagttcacaagcaagtttaa 135  Q
    |||||||||||||||||||||  |||||||||| ||||| |||||| ||||||||||||||||||| ||||    
T  5104953 tgatgacagtcagtcattcac--tttttagagt-ttttttatgatatttttgagttcacaagcaagattaa 5105020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 66 - 104
Target Start/End: Complemental strand, 9189572 - 9189534
Alignment:
Q  66 tgatgacagtcagtcattcactatttttagagtcttttt 104  Q
    ||||||||||||||||||| |||||||||||||||||||    
T  9189572 tgatgacagtcagtcattcgctatttttagagtcttttt 9189534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 66 - 135
Target Start/End: Complemental strand, 13972813 - 13972744
Alignment:
Q  66 tgatgacagtcagtcattcactatttttagagtctttttcatgata-ttttgagttcacaagcaagtttaa 135  Q
    |||||||||||| ||||||  |||||||||||||||||| |||||| |||||||||||||| |||| ||||    
T  13972813 tgatgacagtcaatcattcgttatttttagagtcttttt-atgatatttttgagttcacaaacaagattaa 13972744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 66 - 104
Target Start/End: Complemental strand, 31586823 - 31586785
Alignment:
Q  66 tgatgacagtcagtcattcactatttttagagtcttttt 104  Q
    ||||||||||||||||||| |||||||||||||||||||    
T  31586823 tgatgacagtcagtcattcgctatttttagagtcttttt 31586785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 66 - 104
Target Start/End: Complemental strand, 37280596 - 37280558
Alignment:
Q  66 tgatgacagtcagtcattcactatttttagagtcttttt 104  Q
    ||||||||||||||||||| |||||||||||||||||||    
T  37280596 tgatgacagtcagtcattcgctatttttagagtcttttt 37280558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 66 - 104
Target Start/End: Complemental strand, 43208809 - 43208771
Alignment:
Q  66 tgatgacagtcagtcattcactatttttagagtcttttt 104  Q
    ||||||||||||||||||| |||||||||||||||||||    
T  43208809 tgatgacagtcagtcattcgctatttttagagtcttttt 43208771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 64 - 135
Target Start/End: Original strand, 6825972 - 6826043
Alignment:
Q  64 tatgatgacagtcagtcattcactatttttagagtctttttcatgata-ttttgagttcacaagcaagtttaa 135  Q
    |||||||||||||| ||||||  ||| |||| ||||||||| |||||| ||||||||||||||||||| ||||    
T  6825972 tatgatgacagtcaatcattcgttatatttaaagtcttttt-atgatatttttgagttcacaagcaagattaa 6826043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 111 - 147
Target Start/End: Complemental strand, 31428404 - 31428368
Alignment:
Q  111 attttgagttcacaagcaagtttaaacaacaaagaaa 147  Q
    |||||||||||||||||||||||||||||||| ||||    
T  31428404 attttgagttcacaagcaagtttaaacaacaaggaaa 31428368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #29
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 65 - 104
Target Start/End: Complemental strand, 1507521 - 1507482
Alignment:
Q  65 atgatgacagtcagtcattcactatttttagagtcttttt 104  Q
    |||||||||||||||||||||||||||||| ||| |||||    
T  1507521 atgatgacagtcagtcattcactatttttaaagttttttt 1507482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #30
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 66 - 104
Target Start/End: Complemental strand, 1504318 - 1504280
Alignment:
Q  66 tgatgacagtcagtcattcactatttttagagtcttttt 104  Q
    ||||||||||||||||||||||||||||| ||| |||||    
T  1504318 tgatgacagtcagtcattcactatttttaaagttttttt 1504280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #31
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 66 - 104
Target Start/End: Original strand, 8887842 - 8887880
Alignment:
Q  66 tgatgacagtcagtcattcactatttttagagtcttttt 104  Q
    ||||||||||| ||||||| |||||||||||||||||||    
T  8887842 tgatgacagtccgtcattcgctatttttagagtcttttt 8887880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #32
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 66 - 104
Target Start/End: Complemental strand, 9186343 - 9186305
Alignment:
Q  66 tgatgacagtcagtcattcactatttttagagtcttttt 104  Q
    |||||||||| |||||||| |||||||||||||||||||    
T  9186343 tgatgacagttagtcattcgctatttttagagtcttttt 9186305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #33
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 66 - 104
Target Start/End: Original strand, 13517415 - 13517453
Alignment:
Q  66 tgatgacagtcagtcattcactatttttagagtcttttt 104  Q
    ||||||||||||||||| ||||||||||||||| |||||    
T  13517415 tgatgacagtcagtcatacactatttttagagttttttt 13517453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #34
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 66 - 104
Target Start/End: Complemental strand, 25957363 - 25957325
Alignment:
Q  66 tgatgacagtcagtcattcactatttttagagtcttttt 104  Q
    ||||||||||| ||||||| |||||||||||||||||||    
T  25957363 tgatgacagtccgtcattcgctatttttagagtcttttt 25957325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #35
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 66 - 104
Target Start/End: Original strand, 40780658 - 40780696
Alignment:
Q  66 tgatgacagtcagtcattcactatttttagagtcttttt 104  Q
    |||||||||||| |||||| |||||||||||||||||||    
T  40780658 tgatgacagtcaatcattcgctatttttagagtcttttt 40780696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #36
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 66 - 104
Target Start/End: Complemental strand, 45494068 - 45494030
Alignment:
Q  66 tgatgacagtcagtcattcactatttttagagtcttttt 104  Q
    |||||||||||| |||||||||||||||||||| |||||    
T  45494068 tgatgacagtcaatcattcactatttttagagttttttt 45494030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #37
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 66 - 104
Target Start/End: Complemental strand, 45501810 - 45501772
Alignment:
Q  66 tgatgacagtcagtcattcactatttttagagtcttttt 104  Q
    |||||||||||| |||||||||||||||||||| |||||    
T  45501810 tgatgacagtcaatcattcactatttttagagttttttt 45501772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #38
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 66 - 103
Target Start/End: Complemental strand, 23674581 - 23674544
Alignment:
Q  66 tgatgacagtcagtcattcactatttttagagtctttt 103  Q
    ||||||| ||||||||| ||||||||||||||||||||    
T  23674581 tgatgacggtcagtcatacactatttttagagtctttt 23674544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #39
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 68 - 135
Target Start/End: Original strand, 13136764 - 13136831
Alignment:
Q  68 atgacagtcagtcattcactatttttagagtctttttcatgata-ttttgagttcacaagcaagtttaa 135  Q
    ||||||||||||||||   ||||||||||||| |||| |||||| |||||||||||||| |||| ||||    
T  13136764 atgacagtcagtcatttgttatttttagagtcatttt-atgatatttttgagttcacaaacaagattaa 13136831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 116; Significance: 4e-59; HSPs: 23)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 116; E-Value: 4e-59
Query Start/End: Original strand, 66 - 229
Target Start/End: Original strand, 2793299 - 2793462
Alignment:
Q  66 tgatgacagtcagtcattcactatttttagagtctttttcatgatattttgagttcacaagcaagtttaaacaacaaagaaaacnnnnnnnntagaagat 165  Q
    ||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||  |||||||||        ||||||||    
T  2793299 tgatgacagtcagtcgttcactatttttagagtctttttaatgatattttgagttcacaagcaagtttaaacagtaaagaaaacaagaaaaatagaagat 2793398  T
Q  166 ttcgaagaaagcaaaatcgtgtcacgattgttgaaaacgtggcacgatttggagcacaggatga 229  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||    
T  2793399 ttcgaagaaagcaaaatcgtgtcacgattgttgaaaacgtgtcacgatttgaagcacaggatga 2793462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 104; E-Value: 6e-52
Query Start/End: Original strand, 66 - 229
Target Start/End: Complemental strand, 1951345 - 1951182
Alignment:
Q  66 tgatgacagtcagtcattcactatttttagagtctttttcatgatattttgagttcacaagcaagtttaaacaacaaagaaaacnnnnnnnntagaagat 165  Q
    ||||||||||||||||||||||||||| ||  || |||||||||||| ||||||||||||||||||||||||| ||||||||||        ||||||||    
T  1951345 tgatgacagtcagtcattcactattttaagtatcattttcatgatatcttgagttcacaagcaagtttaaacagcaaagaaaacaagaaaaatagaagat 1951246  T
Q  166 ttcgaagaaagcaaaatcgtgtcacgattgttgaaaacgtggcacgatttggagcacaggatga 229  Q
    ||| ||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||    
T  1951245 ttcaaagaaagcaaaatcgtgtcacgattgttgaaaacgtgtcacgatttggagcataggatga 1951182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 92; E-Value: 8e-45
Query Start/End: Original strand, 66 - 221
Target Start/End: Complemental strand, 49499568 - 49499413
Alignment:
Q  66 tgatgacagtcagtcattcactatttttagagtctttttcatgatattttgagttcacaagcaagtttaaacaacaaagaaaacnnnnnnnntagaagat 165  Q
    ||||||||||||||||||| || ||||||| ||  |||||||||||||||||||||||| ||||| ||||||||||||||||||        ||||||||    
T  49499568 tgatgacagtcagtcattcgctgtttttagtgttattttcatgatattttgagttcacatgcaagcttaaacaacaaagaaaacaagaaaaatagaagat 49499469  T
Q  166 ttcgaagaaagcaaaatcgtgtcacgattgttgaaaacgtggcacgatttggagca 221  Q
    || ||||||||||||||| |||||||||||||||||||||| ||||||||||||||    
T  49499468 tttgaagaaagcaaaatcatgtcacgattgttgaaaacgtgtcacgatttggagca 49499413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 66 - 229
Target Start/End: Complemental strand, 29644308 - 29644145
Alignment:
Q  66 tgatgacagtcagtcattcactatttttagagtctttttcatgatatttt-gagttcacaagcaagtttaaacaacaaagaaaacnnnnnnnntagaaga 164  Q
    ||||||||||| |||||||   |||| |||||||||||| |||||||||| ||||||||||||||  |||| || |||| ||| |        |||||||    
T  29644308 tgatgacagtctgtcattccacatttatagagtcttttt-atgatatttttgagttcacaagcaaacttaagcagcaaaaaaagcaagaaaaatagaaga 29644210  T
Q  165 tttcgaagaaagcaaaatcgtgtcacgattgttgaaaacgtggcacgatttggagcacaggatga 229  Q
     || |||||||| ||||||||||||||||||||||||||||  ||||||||||||||||||||||    
T  29644209 ctttgaagaaagtaaaatcgtgtcacgattgttgaaaacgtatcacgatttggagcacaggatga 29644145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 106 - 229
Target Start/End: Complemental strand, 34733223 - 34733100
Alignment:
Q  106 atgatattttgagttcacaagcaagtttaaacaacaaagaaaacnnnnnnnntagaagatttcgaagaaagcaaaatcgtgtcacgattgttgaaaacgt 205  Q
    ||||| ||||||||||||||||||| |||||||  || |||| |        | |||||||| |||||||| ||||||||| |||||||||||||||| |    
T  34733223 atgatcttttgagttcacaagcaagattaaacagtaaggaaatcatgaaaagttgaagattttgaagaaagtaaaatcgtgacacgattgttgaaaacat 34733124  T
Q  206 ggcacgatttggagcacaggatga 229  Q
    | || |||||||||||||||||||    
T  34733123 gtcaggatttggagcacaggatga 34733100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 66 - 135
Target Start/End: Complemental strand, 41059234 - 41059164
Alignment:
Q  66 tgatgacagtcagtcattcactatttttagagtctttttcatgata-ttttgagttcacaagcaagtttaa 135  Q
    ||||||||||||||||||| ||||||||||||||||||| |||||| |||||||||| |||||||| ||||    
T  41059234 tgatgacagtcagtcattcgctatttttagagtcttttttatgatatttttgagttcgcaagcaagcttaa 41059164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 66 - 147
Target Start/End: Complemental strand, 45961707 - 45961626
Alignment:
Q  66 tgatgacagtcagtcattcactatttttagagtctttttcatgata-ttttgagttcacaagcaagtttaaacaacaaagaaa 147  Q
    ||||||||||||||||||  |||||||||||||||| || |||||| ||||||||||||||||||| ||||||||||| ||||    
T  45961707 tgatgacagtcagtcatttgctatttttagagtcttgtt-atgataattttgagttcacaagcaagcttaaacaacaaggaaa 45961626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 67 - 147
Target Start/End: Complemental strand, 27537212 - 27537132
Alignment:
Q  67 gatgacagtcagtcattcactatttttagagtctttttcatgata-ttttgagttcacaagcaagtttaaacaacaaagaaa 147  Q
    |||||||||||||||||  ||||||||| ||||||||| |||||| ||||||||||||||||||| ||||||||||| ||||    
T  27537212 gatgacagtcagtcatttgctatttttatagtcttttt-atgataattttgagttcacaagcaagcttaaacaacaaggaaa 27537132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 66 - 147
Target Start/End: Original strand, 31204014 - 31204095
Alignment:
Q  66 tgatgacagtcagtcattcactatttttagagtctttttcatgatattttgagttcacaagcaagtttaaacaacaaagaaa 147  Q
    |||||| ||||||||||||  ||||||||| ||| ||||||| || ||||||||||||||||||| ||||||||||| ||||    
T  31204014 tgatgatagtcagtcattctttatttttagtgtcattttcattatgttttgagttcacaagcaagcttaaacaacaaggaaa 31204095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 66 - 135
Target Start/End: Original strand, 2404722 - 2404791
Alignment:
Q  66 tgatgacagtcagtcattcactatttttagagtctttttcatgata-ttttgagttcacaagcaagtttaa 135  Q
    ||||||||||||||||||| ||||||||||||||||||| || ||| ||||||||||||||||||| ||||    
T  2404722 tgatgacagtcagtcattcgctatttttagagtcttttt-ataatatttttgagttcacaagcaagattaa 2404791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 64 - 104
Target Start/End: Complemental strand, 47708819 - 47708779
Alignment:
Q  64 tatgatgacagtcagtcattcactatttttagagtcttttt 104  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  47708819 tatgatgacagtcagtcattcactatttttagagtcttttt 47708779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 66 - 135
Target Start/End: Original strand, 42021721 - 42021790
Alignment:
Q  66 tgatgacagtcagtcattcactatttttagagtctttttcatgatatt-ttgagttcacaagcaagtttaa 135  Q
    |||||||||||| |||||| ||||||||||||||||||| || |||||  |||||||||||||||||||||    
T  42021721 tgatgacagtcaatcattcgctatttttagagtcttttt-ataatattactgagttcacaagcaagtttaa 42021790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 66 - 103
Target Start/End: Complemental strand, 22460443 - 22460406
Alignment:
Q  66 tgatgacagtcagtcattcactatttttagagtctttt 103  Q
    ||||||||||||||||||||||||||||||||||||||    
T  22460443 tgatgacagtcagtcattcactatttttagagtctttt 22460406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 66 - 142
Target Start/End: Complemental strand, 6071895 - 6071824
Alignment:
Q  66 tgatgacagtcagtcattcactatttttagagtctttttcatgatattttgagttcacaagcaagtttaaacaacaa 142  Q
    |||||||||||||||||||| |||||     ||| |||||||| | ||||||||||||||||||| |||||||||||    
T  6071895 tgatgacagtcagtcattcattattt-----gtcattttcatgttgttttgagttcacaagcaagcttaaacaacaa 6071824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 66 - 135
Target Start/End: Complemental strand, 21019367 - 21019299
Alignment:
Q  66 tgatgacagtcagtcattcactatttttagagtctttttcatgata-ttttgagttcacaagcaagtttaa 135  Q
    ||||||||||||||||||| ||||||||||||||||||  |||||| |||||||||| ||| |||| ||||    
T  21019367 tgatgacagtcagtcattcgctatttttagagtctttt--atgatatttttgagttcgcaaccaagcttaa 21019299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 66 - 104
Target Start/End: Complemental strand, 3088735 - 3088697
Alignment:
Q  66 tgatgacagtcagtcattcactatttttagagtcttttt 104  Q
    ||||||||||||||||| |||||||||||||||||||||    
T  3088735 tgatgacagtcagtcatgcactatttttagagtcttttt 3088697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 66 - 104
Target Start/End: Original strand, 45940621 - 45940659
Alignment:
Q  66 tgatgacagtcagtcattcactatttttagagtcttttt 104  Q
    ||||||||||||||||||| |||||||||||||||||||    
T  45940621 tgatgacagtcagtcattcgctatttttagagtcttttt 45940659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 66 - 103
Target Start/End: Complemental strand, 22454319 - 22454282
Alignment:
Q  66 tgatgacagtcagtcattcactatttttagagtctttt 103  Q
    ||||||||||||||||||||||||||||||| ||||||    
T  22454319 tgatgacagtcagtcattcactatttttagaatctttt 22454282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 66 - 103
Target Start/End: Original strand, 49147113 - 49147150
Alignment:
Q  66 tgatgacagtcagtcattcactatttttagagtctttt 103  Q
    |||||||||||| |||||||||||||||||||||||||    
T  49147113 tgatgacagtcaatcattcactatttttagagtctttt 49147150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 65 - 104
Target Start/End: Complemental strand, 37184784 - 37184745
Alignment:
Q  65 atgatgacagtcagtcattcactatttttagagtcttttt 104  Q
    |||||||||||| ||||||| |||||||||||||||||||    
T  37184784 atgatgacagtccgtcattcgctatttttagagtcttttt 37184745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 66 - 104
Target Start/End: Original strand, 28110283 - 28110321
Alignment:
Q  66 tgatgacagtcagtcattcactatttttagagtcttttt 104  Q
    ||||||||||| ||||||| |||||||||||||||||||    
T  28110283 tgatgacagtccgtcattcgctatttttagagtcttttt 28110321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 105 - 142
Target Start/End: Original strand, 7634926 - 7634963
Alignment:
Q  105 catgatattttgagttcacaagcaagtttaaacaacaa 142  Q
    |||||||||||||||||||||| ||| |||||||||||    
T  7634926 catgatattttgagttcacaagtaagcttaaacaacaa 7634963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 66 - 115
Target Start/End: Complemental strand, 21108393 - 21108345
Alignment:
Q  66 tgatgacagtcagtcattcactatttttagagtctttttcatgatatttt 115  Q
    ||||||||||||||||||| || ||||||||||||| || ||||||||||    
T  21108393 tgatgacagtcagtcattcgctctttttagagtcttctt-atgatatttt 21108345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 109; Significance: 6e-55; HSPs: 27)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 109; E-Value: 6e-55
Query Start/End: Original strand, 65 - 229
Target Start/End: Original strand, 10431385 - 10431549
Alignment:
Q  65 atgatgacagtcagtcattcactatttttagagtctttttcatgatattttgagttcacaagcaagtttaaacaacaaagaaaacnnnnnnnntagaaga 164  Q
    ||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||| ||||||||||        || ||||    
T  10431385 atgatgacagtcagtcattcactatttttagtgtcattttcatgatattttgagttcacaagcaagtttaaacagcaaagaaaacaagaaaaatataaga 10431484  T
Q  165 tttcgaagaaagcaaaatcgtgtcacgattgttgaaaacgtggcacgatttggagcacaggatga 229  Q
    ||| |||||||||||||| ||||||||||||||||||||||| |||||||| |||||||||||||    
T  10431485 ttttgaagaaagcaaaattgtgtcacgattgttgaaaacgtgtcacgatttagagcacaggatga 10431549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 109; E-Value: 6e-55
Query Start/End: Original strand, 65 - 229
Target Start/End: Original strand, 26556509 - 26556673
Alignment:
Q  65 atgatgacagtcagtcattcactatttttagagtctttttcatgatattttgagttcacaagcaagtttaaacaacaaagaaaacnnnnnnnntagaaga 164  Q
    ||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||| |||||||||||||||| |        |||||||    
T  26556509 atgatgacagtcagtcattcactatttttagtgtcattttcatgatattttgagttcacaagcaagcttaaacaacaaagaaagcaagaaaaatagaaga 26556608  T
Q  165 tttcgaagaaagcaaaatcgtgtcacgattgttgaaaacgtggcacgatttggagcacaggatga 229  Q
    ||| |||||||||||||||||||||||||||||||||||||| |||||||| ||||||| |||||    
T  26556609 ttttgaagaaagcaaaatcgtgtcacgattgttgaaaacgtgtcacgatttagagcacatgatga 26556673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 66 - 229
Target Start/End: Original strand, 4542074 - 4542237
Alignment:
Q  66 tgatgacagtcagtcattcactatttttagagtctttttcatgatattttgagttcacaagcaagtttaaacaacaaagaaaacnnnnnnnntagaagat 165  Q
    |||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||| ||||||||||        ||||||||    
T  4542074 tgatgacagtcagtcattcactatttttagtgtcattttcatgatattttgagttcacaagcaagtttaaacagcaaagaaaacaagaaaaatagaagat 4542173  T
Q  166 ttcgaagaaagcaaaatcgtgtcacgattgttgaaaacgtggcacgatttggagcacaggatga 229  Q
    || || ||||||||| | ||||||||||||||||||| ||| || ||||||||||| |||||||    
T  4542174 tttgaggaaagcaaatttgtgtcacgattgttgaaaatgtgtcatgatttggagcataggatga 4542237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 92; E-Value: 8e-45
Query Start/End: Original strand, 66 - 229
Target Start/End: Complemental strand, 2442277 - 2442114
Alignment:
Q  66 tgatgacagtcagtcattcactatttttagagtctttttcatgatattttgagttcacaagcaagtttaaacaacaaagaaaacnnnnnnnntagaagat 165  Q
    ||||||||||||||||||||||||||| || ||| |||||||||||||||||||||||||||||||||||||| ||||||||||        ||||||||    
T  2442277 tgatgacagtcagtcattcactattttaagtgtcattttcatgatattttgagttcacaagcaagtttaaacagcaaagaaaacaagaaaaatagaagat 2442178  T
Q  166 ttcgaagaaagcaaaatcgtgtcacgattgttgaaaacgtggcacgatttggagcacaggatga 229  Q
    |  || ||||||||| ||||||||||||||||||||||||  ||||||||| |||| |||||||    
T  2442177 tctgaggaaagcaaattcgtgtcacgattgttgaaaacgtatcacgatttgaagcataggatga 2442114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 66 - 229
Target Start/End: Original strand, 8276012 - 8276175
Alignment:
Q  66 tgatgacagtcagtcattcactatttttagagtctttttcatgatatttt-gagttcacaagcaagtttaaacaacaaagaaaacnnnnnnnntagaaga 164  Q
    ||||||||||| |||||||  |||||||||||||||||| |||||||||| ||||||||||||||| | || || |||  ||| |        |||||||    
T  8276012 tgatgacagtctgtcattccatatttttagagtcttttt-atgatatttttgagttcacaagcaagctcaagcagcaagaaaagcaagaaaaatagaaga 8276110  T
Q  165 tttcgaagaaagcaaaatcgtgtcacgattgttgaaaacgtggcacgatttggagcacaggatga 229  Q
    ||| ||||||| ||||||||||||| |||||||||||||||  |||||||||||||||| |||||    
T  8276111 ttttgaagaaaacaaaatcgtgtcatgattgttgaaaacgtatcacgatttggagcacatgatga 8276175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 66 - 147
Target Start/End: Complemental strand, 48645921 - 48645840
Alignment:
Q  66 tgatgacagtcagtcattcactatttttagagtctttttcatgatattttgagttcacaagcaagtttaaacaacaaagaaa 147  Q
    |||||||||||||||||||  ||||||||| ||| |||||||||| ||||||||||||||||||| ||||||||||| ||||    
T  48645921 tgatgacagtcagtcattctttatttttagtgtcattttcatgatgttttgagttcacaagcaagcttaaacaacaaggaaa 48645840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 65 - 135
Target Start/End: Complemental strand, 45291475 - 45291405
Alignment:
Q  65 atgatgacagtcagtcattcactatttttagagtctttttcatgata-ttttgagttcacaagcaagtttaa 135  Q
    |||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||| ||||    
T  45291475 atgatgacagtcagtcattcactatttttagagtcttttt-atgatatttttgagttcacaagcaagcttaa 45291405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 66 - 135
Target Start/End: Complemental strand, 45288138 - 45288069
Alignment:
Q  66 tgatgacagtcagtcattcactatttttagagtctttttcatgata-ttttgagttcacaagcaagtttaa 135  Q
    ||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||| ||||    
T  45288138 tgatgacagtcagtcattcactatttttagagtcttttt-atgatatttttgagttcacaagcaagcttaa 45288069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 66 - 147
Target Start/End: Original strand, 16164889 - 16164970
Alignment:
Q  66 tgatgacagtcagtcattcactatttttagagtctttttcatgatattttgagttcacaagcaagtttaaacaacaaagaaa 147  Q
    |||||||||||||||||||  ||||||||| ||  |||||||||| ||||||||||||||||||| ||||||||||| ||||    
T  16164889 tgatgacagtcagtcattcgttatttttagtgtaattttcatgatgttttgagttcacaagcaagcttaaacaacaaggaaa 16164970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 66 - 147
Target Start/End: Original strand, 48644616 - 48644697
Alignment:
Q  66 tgatgacagtcagtcattcactatttttagagtctttttcatgatattttgagttcacaagcaagtttaaacaacaaagaaa 147  Q
    |||||||||||||||||||  ||||||||| ||| ||||||| || ||||||||||||||||||| ||||||||||| ||||    
T  48644616 tgatgacagtcagtcattctttatttttagtgtcattttcataatgttttgagttcacaagcaagcttaaacaacaaggaaa 48644697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 66 - 135
Target Start/End: Complemental strand, 9865642 - 9865573
Alignment:
Q  66 tgatgacagtcagtcattcactatttttagagtctttttcatgata-ttttgagttcacaagcaagtttaa 135  Q
    ||||||||||||||||||| ||||||||||||||||||| |||||| ||||||||||||||||||| ||||    
T  9865642 tgatgacagtcagtcattcgctatttttagagtcttttt-atgatatttttgagttcacaagcaagattaa 9865573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 66 - 135
Target Start/End: Complemental strand, 20081640 - 20081571
Alignment:
Q  66 tgatgacagtcagtcattcactatttttagagtctttttcatgata-ttttgagttcacaagcaagtttaa 135  Q
    ||||||||||||||||||||||||||||||||| ||||| |||||| ||||||||||||||||||| ||||    
T  20081640 tgatgacagtcagtcattcactatttttagagtgttttt-atgatatttttgagttcacaagcaagcttaa 20081571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 64 - 135
Target Start/End: Original strand, 17729971 - 17730042
Alignment:
Q  64 tatgatgacagtcagtcattcactatttttagagtctttttcatgata-ttttgagttcacaagcaagtttaa 135  Q
    ||||||||||||||||| |||||||||||||||||| |||| |||||| ||||||||||||||||||| ||||    
T  17729971 tatgatgacagtcagtctttcactatttttagagtcctttt-atgatatttttgagttcacaagcaagcttaa 17730042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 66 - 147
Target Start/End: Original strand, 6602621 - 6602702
Alignment:
Q  66 tgatgacagtcagtcattcactatttttagagtctttttcatgatattttgagttcacaagcaagtttaaacaacaaagaaa 147  Q
    |||||||||||||||||||  ||||||||| ||| | ||||| || |||| |||||||||||||| ||||||||||| ||||    
T  6602621 tgatgacagtcagtcattcgttatttttagtgtcatgttcataatgttttaagttcacaagcaagcttaaacaacaaggaaa 6602702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 65 - 104
Target Start/End: Complemental strand, 11826431 - 11826392
Alignment:
Q  65 atgatgacagtcagtcattcactatttttagagtcttttt 104  Q
    |||||||||||||||||| |||||||||||||||||||||    
T  11826431 atgatgacagtcagtcatgcactatttttagagtcttttt 11826392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 65 - 104
Target Start/End: Complemental strand, 37167071 - 37167032
Alignment:
Q  65 atgatgacagtcagtcattcactatttttagagtcttttt 104  Q
    |||||||||||||||||||| |||||||||||||||||||    
T  37167071 atgatgacagtcagtcattcgctatttttagagtcttttt 37167032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 66 - 142
Target Start/End: Complemental strand, 4596924 - 4596848
Alignment:
Q  66 tgatgacagtcagtcattcactatttttagagtctttttcatgata-ttttgagttcacaagcaagtttaaacaacaa 142  Q
    |||||||||||| ||||||  |||||||||||||||||| |||||| ||||||| ||||||| ||| |||| ||||||    
T  4596924 tgatgacagtcaatcattcgttatttttagagtcttttt-atgatatttttgagctcacaagaaagattaagcaacaa 4596848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 66 - 98
Target Start/End: Complemental strand, 13450765 - 13450733
Alignment:
Q  66 tgatgacagtcagtcattcactatttttagagt 98  Q
    |||||||||||||||||||||||||||||||||    
T  13450765 tgatgacagtcagtcattcactatttttagagt 13450733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 65 - 104
Target Start/End: Complemental strand, 22233558 - 22233519
Alignment:
Q  65 atgatgacagtcagtcattcactatttttagagtcttttt 104  Q
    |||||||||| ||||||| |||||||||||||||||||||    
T  22233558 atgatgacagccagtcatgcactatttttagagtcttttt 22233519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 65 - 104
Target Start/End: Original strand, 22253181 - 22253220
Alignment:
Q  65 atgatgacagtcagtcattcactatttttagagtcttttt 104  Q
    |||||||||| ||||||| |||||||||||||||||||||    
T  22253181 atgatgacagccagtcatgcactatttttagagtcttttt 22253220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 66 - 135
Target Start/End: Original strand, 4694723 - 4694792
Alignment:
Q  66 tgatgacagtcagtcattcactatttttagagtctttttcatgata-ttttgagttcacaagcaagtttaa 135  Q
    |||||| |||||||||||   |||||||||||||||| | |||||| ||||||||||||||||||| ||||    
T  4694723 tgatgaaagtcagtcatttgttatttttagagtctttct-atgatatttttgagttcacaagcaagattaa 4694792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 66 - 135
Target Start/End: Original strand, 9080376 - 9080445
Alignment:
Q  66 tgatgacagtcagtcattcactatttttagagtctttttcatg-atattttgagttcacaagcaagtttaa 135  Q
    |||||||||| ||||||||  |||||||||||||||||| ||| |  ||||||||||||||||||| ||||    
T  9080376 tgatgacagttagtcattcgttatttttagagtcttttt-atgtaatttttgagttcacaagcaagcttaa 9080445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 66 - 135
Target Start/End: Original strand, 10344616 - 10344685
Alignment:
Q  66 tgatgacagtcagtcattcactatttttagagtctttttcatgata-ttttgagttcacaagcaagtttaa 135  Q
    ||||||| |||||| |||| |||||||||||||||| || |||| | ||||||||||||||||||| ||||    
T  10344616 tgatgactgtcagtaattcgctatttttagagtcttctt-atgaaatttttgagttcacaagcaagcttaa 10344685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 66 - 104
Target Start/End: Original strand, 22256455 - 22256493
Alignment:
Q  66 tgatgacagtcagtcattcactatttttagagtcttttt 104  Q
    ||||||||| ||||||| |||||||||||||||||||||    
T  22256455 tgatgacagccagtcatgcactatttttagagtcttttt 22256493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 66 - 104
Target Start/End: Complemental strand, 23314585 - 23314547
Alignment:
Q  66 tgatgacagtcagtcattcactatttttagagtcttttt 104  Q
    |||| ||| ||||||||||||||||||||||||||||||    
T  23314585 tgataacaatcagtcattcactatttttagagtcttttt 23314547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 66 - 104
Target Start/End: Complemental strand, 37416184 - 37416146
Alignment:
Q  66 tgatgacagtcagtcattcactatttttagagtcttttt 104  Q
    ||||||||||| ||||||||||||||||| |||||||||    
T  37416184 tgatgacagtcggtcattcactatttttaaagtcttttt 37416146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 66 - 104
Target Start/End: Complemental strand, 37423716 - 37423678
Alignment:
Q  66 tgatgacagtcagtcattcactatttttagagtcttttt 104  Q
    ||||||||||| ||||||||||||||||| |||||||||    
T  37423716 tgatgacagtcggtcattcactatttttaaagtcttttt 37423678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 108; Significance: 2e-54; HSPs: 25)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 66 - 229
Target Start/End: Complemental strand, 28442181 - 28442018
Alignment:
Q  66 tgatgacagtcagtcattcactatttttagagtctttttcatgatattttgagttcacaagcaagtttaaacaacaaagaaaacnnnnnnnntagaagat 165  Q
    |||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||| ||||||||||        || |||||    
T  28442181 tgatgacagtcagtcattcactatttttagtgtcattttcatgatattttgagttcacaagcaagtttaaacagcaaagaaaacaagaaaaatataagat 28442082  T
Q  166 ttcgaagaaagcaaaatcgtgtcacgattgttgaaaacgtggcacgatttggagcacaggatga 229  Q
    || |||||||||||||| ||||||||||||||||||||||| |||||||| |||||||||||||    
T  28442081 tttgaagaaagcaaaattgtgtcacgattgttgaaaacgtgtcacgatttagagcacaggatga 28442018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 104; E-Value: 6e-52
Query Start/End: Original strand, 66 - 229
Target Start/End: Original strand, 42061486 - 42061649
Alignment:
Q  66 tgatgacagtcagtcattcactatttttagagtctttttcatgatattttgagttcacaagcaagtttaaacaacaaagaaaacnnnnnnnntagaagat 165  Q
    |||||||||||||||||||||| ||||||| ||| |||||||||||||||||||||||||||||| ||||||| ||||||||||        ||||||||    
T  42061486 tgatgacagtcagtcattcactgtttttagtgtcattttcatgatattttgagttcacaagcaagcttaaacagcaaagaaaacaagaaaaatagaagat 42061585  T
Q  166 ttcgaagaaagcaaaatcgtgtcacgattgttgaaaacgtggcacgatttggagcacaggatga 229  Q
    || |||||||||||||||||||||||||||||||||||||| ||||||||| |||||| |||||    
T  42061586 tttgaagaaagcaaaatcgtgtcacgattgttgaaaacgtgtcacgatttgaagcacatgatga 42061649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 65 - 229
Target Start/End: Original strand, 31862871 - 31863035
Alignment:
Q  65 atgatgacagtcagtcattcactatttttagagtctttttcatgatattttgagttcacaagcaagtttaaacaacaaagaaaacnnnnnnnntagaaga 164  Q
    ||||||||||||||||||||  ||||||||| ||| ||||||| |||||||||||||||||||||| |||||||||||||||| |        ||||| |    
T  31862871 atgatgacagtcagtcattccttatttttagtgtcattttcataatattttgagttcacaagcaagcttaaacaacaaagaaagcaagaaaaatagaaaa 31862970  T
Q  165 tttcgaagaaagcaaaatcgtgtcacgattgttgaaaacgtggcacgatttggagcacaggatga 229  Q
    ||| |||||||||||||||||||||||||||||||||||||| |||||||| ||||||| |||||    
T  31862971 ttttgaagaaagcaaaatcgtgtcacgattgttgaaaacgtgtcacgatttagagcacatgatga 31863035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 65 - 194
Target Start/End: Complemental strand, 14376835 - 14376706
Alignment:
Q  65 atgatgacagtcagtcattcactatttttagagtctttttcatgatattttgagttcacaagcaagtttaaacaacaaagaaaacnnnnnnnntagaaga 164  Q
    ||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||| |        |||||||    
T  14376835 atgatgacagtcagtcattcactatttttagtgtcattttcatgatattttgagttcacaagcaagtttaaacaacaaagaaatcaagaaaaatagaaga 14376736  T
Q  165 tttcgaagaaagcaaaatcgtgtcacgatt 194  Q
    ||| || ||||||||| |||||||||||||    
T  14376735 ttttgaggaaagcaaattcgtgtcacgatt 14376706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 66 - 229
Target Start/End: Original strand, 43490793 - 43490956
Alignment:
Q  66 tgatgacagtcagtcatt-cactatttttagagtctttttcatgatatttt-gagttcacaagcaagtttaaacaacaaagaaaacnnnnnnnntagaag 163  Q
    ||||||||||| |||||| ||| ||||||||||||||||| |||||||||| |||||||||| |||| |||| || |||  ||| |        ||||||    
T  43490793 tgatgacagtctgtcatttcac-atttttagagtcttttt-atgatatttttgagttcacaaacaagcttaagcagcaagaaaagcaagaaaaatagaag 43490890  T
Q  164 atttcgaagaaagcaaaatcgtgtcacgattgttgaaaacgtggcacgatttggagcacaggatga 229  Q
    |||| |||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||    
T  43490891 attttgaagaaagcaaaatcgtgtcacgattgttgaaaacgtgtcacgattaggagcacaggatga 43490956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 66 - 229
Target Start/End: Original strand, 32837083 - 32837246
Alignment:
Q  66 tgatgacagtcagtcattcactatttttagagtctttttcatgatatttt-gagttcacaagcaagtttaaacaacaaagaaaacnnnnnnnntagaaga 164  Q
    ||||||||||  |||||||   ||||||||||||||||| |||||||||| ||||||||||||||| |||| || |||  |||          |||||||    
T  32837083 tgatgacagtatgtcattccacatttttagagtcttttt-atgatatttttgagttcacaagcaagcttaagcagcaagaaaagaaagaaaaatagaaga 32837181  T
Q  165 tttcgaagaaagcaaaatcgtgtcacgattgttgaaaacgtggcacgatttggagcacaggatga 229  Q
    ||| ||||||||||||||||||||| |||||||||||||||| |||||||||||||| |||||||    
T  32837182 ttttgaagaaagcaaaatcgtgtcatgattgttgaaaacgtgtcacgatttggagcataggatga 32837246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 66 - 229
Target Start/End: Original strand, 37214766 - 37214929
Alignment:
Q  66 tgatgacagtcagtcattcactatttttagagtctttttcatgatatttt-gagttcacaagcaagtttaaacaacaaagaaaacnnnnnnnntagaaga 164  Q
    |||| |||||| |||||||   ||||||||||||||||| |||||||||| ||||||||||||||| |||| || |||  ||| |        |||||||    
T  37214766 tgataacagtctgtcattccacatttttagagtcttttt-atgatatttttgagttcacaagcaagcttaagcagcaagaaaagcaagaaaaatagaaga 37214864  T
Q  165 tttcgaagaaagcaaaatcgtgtcacgattgttgaaaacgtggcacgatttggagcacaggatga 229  Q
    ||| ||||||||||||||||| |||| |||||||||||| || ||||||||||||||||||||||    
T  37214865 ttttgaagaaagcaaaatcgtatcacaattgttgaaaacatgtcacgatttggagcacaggatga 37214929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 66 - 229
Target Start/End: Complemental strand, 22938055 - 22937892
Alignment:
Q  66 tgatgacagtcagtcattcactatttttagagtctttttcatgatatttt-gagttcacaagcaagtttaaacaacaaagaaaacnnnnnnnntagaaga 164  Q
    ||||||||||| |||||||    |||||||||||||||| |||||||||| ||||||||||||||| |||| || |||  ||| |        |||||||    
T  22938055 tgatgacagtctgtcattccacgtttttagagtcttttt-atgatatttttgagttcacaagcaagcttaagcagcaagaaaagcaagaaaaatagaaga 22937957  T
Q  165 tttcgaagaaagcaaaatcgtgtcacgattgttgaaaacgtggcacgatttggagcacaggatga 229  Q
    ||| |||||||||||||||||| |||| |||||||||||||  |||||||||||||||| |||||    
T  22937956 ttttgaagaaagcaaaatcgtgccacggttgttgaaaacgtatcacgatttggagcacaagatga 22937892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 65 - 142
Target Start/End: Complemental strand, 21336743 - 21336665
Alignment:
Q  65 atgatgacagtcagtcattcactatttttagagtctttttcatgata-ttttgagttcacaagcaagtttaaacaacaa 142  Q
    |||||||||||||||||||||||||||||||||||||||| || ||| ||||||||||||||||||| |||| ||||||    
T  21336743 atgatgacagtcagtcattcactatttttagagtcttttttattatatttttgagttcacaagcaagcttaagcaacaa 21336665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 66 - 147
Target Start/End: Complemental strand, 14017036 - 14016955
Alignment:
Q  66 tgatgacagtcagtcattcactatttttagagtctttttcatgat-attttgagttcacaagcaagtttaaacaacaaagaaa 147  Q
    ||||||||||||||||||  ||||||||||||||||||| ||||| |||||||||||||||||||| ||||||||||| ||||    
T  14017036 tgatgacagtcagtcatttgctatttttagagtcttttt-atgataattttgagttcacaagcaagcttaaacaacaaggaaa 14016955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 66 - 135
Target Start/End: Complemental strand, 21828041 - 21827971
Alignment:
Q  66 tgatgacagtcagtcattcactatttttagagtctttttcatgata-ttttgagttcacaagcaagtttaa 135  Q
    ||||||||||||||||||| ||||||||||||||||||| |||||| |||||||||| |||||||| ||||    
T  21828041 tgatgacagtcagtcattcgctatttttagagtcttttttatgatatttttgagttcgcaagcaagcttaa 21827971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 64 - 130
Target Start/End: Original strand, 7270239 - 7270305
Alignment:
Q  64 tatgatgacagtcagtcattcactatttttagagtctttttcatgata-ttttgagttcacaagcaag 130  Q
    ||||||||||||| ||||||| ||||||||||||||||||| |||||| |||||||||||||||||||    
T  7270239 tatgatgacagtctgtcattcgctatttttagagtcttttt-atgatatttttgagttcacaagcaag 7270305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 66 - 147
Target Start/End: Original strand, 17747617 - 17747698
Alignment:
Q  66 tgatgacagtcagtcattcactatttttagagtctttttcatgat-attttgagttcacaagcaagtttaaacaacaaagaaa 147  Q
    ||||||||||||||||||  ||||||||||||||||||| ||||| |||||||||||| ||| ||| ||||||||||| ||||    
T  17747617 tgatgacagtcagtcatttgctatttttagagtcttttt-atgataattttgagttcataagaaagcttaaacaacaaggaaa 17747698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 65 - 135
Target Start/End: Complemental strand, 28788402 - 28788332
Alignment:
Q  65 atgatgacagtcagtcattcactatttttagagtctttttcatgata-ttttgagttcacaagcaagtttaa 135  Q
    |||||||||||||||||||  ||||||||||||||||||| |||||| |||| |||||||||||||| ||||    
T  28788402 atgatgacagtcagtcatttgctatttttagagtcttttt-atgatattttttagttcacaagcaagcttaa 28788332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 66 - 142
Target Start/End: Complemental strand, 40916889 - 40916810
Alignment:
Q  66 tgatgacagtcagtcattcactatttttagagtct--ttttcatgata-ttttgagttcacaagcaagtttaaacaacaa 142  Q
    ||||||||||||||||||  |||||||||||||||  |||| || ||| ||||||||||||||||||| |||| ||||||    
T  40916889 tgatgacagtcagtcatttgctatttttagagtcttttttttatcatatttttgagttcacaagcaagcttaagcaacaa 40916810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 178 - 229
Target Start/End: Complemental strand, 21336609 - 21336558
Alignment:
Q  178 aaaatcgtgtcacgattgttgaaaacgtggcacgatttggagcacaggatga 229  Q
    |||||||||||||| ||||||||||| || |||||||| |||||||||||||    
T  21336609 aaaatcgtgtcacggttgttgaaaacatgtcacgatttagagcacaggatga 21336558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 64 - 142
Target Start/End: Original strand, 30065560 - 30065638
Alignment:
Q  64 tatgatgacagtcagtcattcactatttttagagtctttttcatgata-ttttgagttcacaagcaagtttaaacaacaa 142  Q
    |||||||||| ||| ||||||  |||||||||||||||||| |||||| |||||| |||||||||||| |||| ||||||    
T  30065560 tatgatgacaatcattcattcgttatttttagagtcttttt-atgatatttttgaattcacaagcaagattaagcaacaa 30065638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 66 - 135
Target Start/End: Original strand, 18031710 - 18031779
Alignment:
Q  66 tgatgacagtcagtcattcactatttttagagtctttttcatgatatttt-gagttcacaagcaagtttaa 135  Q
    |||||| |||| |||||||  |||||||||||||||||| |||||||||| ||||||| ||||||||||||    
T  18031710 tgatgatagtccgtcattccatatttttagagtcttttt-atgatattttcgagttcaaaagcaagtttaa 18031779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 66 - 104
Target Start/End: Complemental strand, 41307445 - 41307407
Alignment:
Q  66 tgatgacagtcagtcattcactatttttagagtcttttt 104  Q
    ||||||||||||||||||| |||||||||||||||||||    
T  41307445 tgatgacagtcagtcattcgctatttttagagtcttttt 41307407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 66 - 115
Target Start/End: Original strand, 25329456 - 25329504
Alignment:
Q  66 tgatgacagtcagtcattcactatttttagagtctttttcatgatatttt 115  Q
    ||||||||||||||||||| ||||||||||||| ||||| ||||||||||    
T  25329456 tgatgacagtcagtcattcgctatttttagagt-ttttttatgatatttt 25329504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 68 - 135
Target Start/End: Original strand, 39191333 - 39191400
Alignment:
Q  68 atgacagtcagtcattcactatttttagagtctttttcatgata-ttttgagttcacaagcaagtttaa 135  Q
    |||||||||| |||||   |||||||||||||||||| |||||| ||||||||||||||||||| ||||    
T  39191333 atgacagtcaatcatttgttatttttagagtcttttt-atgatacttttgagttcacaagcaagcttaa 39191400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 178 - 229
Target Start/End: Complemental strand, 21827908 - 21827857
Alignment:
Q  178 aaaatcgtgtcacgattgttgaaaacgtggcacgatttggagcacaggatga 229  Q
    |||||||||||||| |||||||| ||||| |||||||| || ||||||||||    
T  21827908 aaaatcgtgtcacggttgttgaatacgtgtcacgatttagaacacaggatga 21827857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 65 - 103
Target Start/End: Complemental strand, 25329549 - 25329511
Alignment:
Q  65 atgatgacagtcagtcattcactatttttagagtctttt 103  Q
    |||||||||||||||||||| ||||||||||||| ||||    
T  25329549 atgatgacagtcagtcattcgctatttttagagtttttt 25329511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 66 - 99
Target Start/End: Original strand, 31374760 - 31374793
Alignment:
Q  66 tgatgacagtcagtcattcactatttttagagtc 99  Q
    ||||||||||||||||| ||||||||||||||||    
T  31374760 tgatgacagtcagtcatacactatttttagagtc 31374793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 181 - 229
Target Start/End: Original strand, 39191446 - 39191494
Alignment:
Q  181 atcgtgtcacgattgttgaaaacgtggcacgatttggagcacaggatga 229  Q
    |||||||||||||||||||||||||| ||| ||||  || |||||||||    
T  39191446 atcgtgtcacgattgttgaaaacgtgtcacaatttaaagtacaggatga 39191494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 102; Significance: 9e-51; HSPs: 29)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 102; E-Value: 9e-51
Query Start/End: Original strand, 66 - 223
Target Start/End: Original strand, 10663011 - 10663168
Alignment:
Q  66 tgatgacagtcagtcattcactatttttagagtctttttcatgatattttgagttcacaagcaagtttaaacaacaaagaaaacnnnnnnnntagaagat 165  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||| |||||||| |        ||||||||    
T  10663011 tgatgacagtcagtcattcactatttttagagtctttttcatgatatgttgagttcacaagcaagtctaaacagcaaagaaagcaagaaaaatagaagat 10663110  T
Q  166 ttcgaagaaagcaaaatcgtgtcacgattgttgaaaacgtggcacgatttggagcaca 223  Q
    || ||||||||||||||||||||||||||||||||||| || || |||||||||||||    
T  10663111 tttgaagaaagcaaaatcgtgtcacgattgttgaaaacatgtcatgatttggagcaca 10663168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 66 - 224
Target Start/End: Complemental strand, 18722310 - 18722151
Alignment:
Q  66 tgatgacagtcagtcattcactatttttagagtctttttcatgatattttgagttcacaagcaagtttaaacaacaaagaaaacnnnnnnnntagaaga- 164  Q
    |||||||||||||||||||||| ||||||| ||| |||||||||||||||||||||||| ||||| ||||||||||||||||||        |||||||     
T  18722310 tgatgacagtcagtcattcactgtttttagtgtcattttcatgatattttgagttcacatgcaagcttaaacaacaaagaaaacaagaaaaatagaagat 18722211  T
Q  165 tttcgaagaaagcaaaatcgtgtcacgattgttgaaaacgtggcacgatttggagcacag 224  Q
    ||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  18722210 ttttgaagaaagcaaaatcgtgtcacgattgttgaaaacgtgtcacgatttggagcacag 18722151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 66 - 229
Target Start/End: Complemental strand, 33878238 - 33878075
Alignment:
Q  66 tgatgacagtcagtcattcactatttttagagtctttttcatgatattttgagttcacaagcaagtttaaacaacaaagaaaacnnnnnnnntagaagat 165  Q
    |||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||| ||||||||||| ||||||||||        ||||||||    
T  33878238 tgatgacagtcagtcattcactatttttagtgtcattttcatgatattttgagttcacaagaaagtttaaacagcaaagaaaacaagaaaaatagaagat 33878139  T
Q  166 ttcgaagaaagcaaaatcgtgtcacgattgttgaaaacgtggcacgatttggagcacaggatga 229  Q
    || |||||||||||||||||||||||||||||||||||||| ||| |||| || ||||| ||||    
T  33878138 tttgaagaaagcaaaatcgtgtcacgattgttgaaaacgtgtcacaatttagaacacagaatga 33878075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 70 - 229
Target Start/End: Complemental strand, 25595681 - 25595521
Alignment:
Q  70 gacagtcagtcattcactatttttagagtctttttcatgatattttgagttcacaagcaagtttaaacaacaaagaaaacnnnnnnnntagaaga-tttc 168  Q
    |||||||||||||||| | ||||||| ||| |||||||||||||||||||||||| ||||| ||||||||||||||||||        ||||||| |||     
T  25595681 gacagtcagtcattcattgtttttagtgtcattttcatgatattttgagttcacatgcaagcttaaacaacaaagaaaacaagaaaaatagaagattttt 25595582  T
Q  169 gaagaaagcaaaatcgtgtcacgattgttgaaaacgtggcacgatttggagcacaggatga 229  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||    
T  25595581 gaagaaagcaaaatcgtgtcacgattgttgaaaacgtgtcacgatttggagcacatgatga 25595521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 70 - 229
Target Start/End: Complemental strand, 25592496 - 25592336
Alignment:
Q  70 gacagtcagtcattcactatttttagagtctttttcatgatattttgagttcacaagcaagtttaaacaacaaagaaaacnnnnnnnntagaaga-tttc 168  Q
    |||||||||||||||||| ||||||| ||| |||||||||||||||||||||||| ||||| ||||||||||||||||||        ||||||| |||     
T  25592496 gacagtcagtcattcactgtttttagtgtcattttcatgatattttgagttcacatgcaagcttaaacaacaaagaaaacaagaaaaatagaagattttt 25592397  T
Q  169 gaagaaagcaaaatcgtgtcacgattgttgaaaacgtggcacgatttggagcacaggatga 229  Q
    |||||||||||||||||||||||||||||||||| ||| | |||||||||||||| |||||    
T  25592396 gaagaaagcaaaatcgtgtcacgattgttgaaaatgtgtcccgatttggagcacatgatga 25592336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 66 - 229
Target Start/End: Complemental strand, 43682798 - 43682634
Alignment:
Q  66 tgatgacagtcagtcattcactatttttagagtc-tttttcatgatattttgagttcacaagcaagtttaaacaacaaagaaaacnnnnnnnntagaaga 164  Q
    ||||| ||||||||||||||||||||||||  || ||||||||||||||||||||||| ||||||||||||||| |||||||| |        |||||||    
T  43682798 tgatggcagtcagtcattcactatttttagtatcatttttcatgatattttgagttcataagcaagtttaaacagcaaagaaagcaagaaaaatagaaga 43682699  T
Q  165 tttcgaagaaagcaaaatcgtgtcacgattgttgaaaacgtggcacgatttggagcacaggatga 229  Q
    ||| |||||||||||||||||||||||||| ||||||||||| ||| ||||||| ||||||||||    
T  43682698 ttttgaagaaagcaaaatcgtgtcacgattattgaaaacgtgtcacaatttggaacacaggatga 43682634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 66 - 148
Target Start/End: Original strand, 23612569 - 23612651
Alignment:
Q  66 tgatgacagtcagtcattcactatttttagagtctttttcatgatattttgagttcacaagcaagtttaaacaacaaagaaaa 148  Q
    |||||||||||||||||||||||||||||| ||| |||| |||| |||||||||||||||||||||||||||| |||||||||    
T  23612569 tgatgacagtcagtcattcactatttttagtgtcattttgatgagattttgagttcacaagcaagtttaaacagcaaagaaaa 23612651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 66 - 229
Target Start/End: Original strand, 14420864 - 14421027
Alignment:
Q  66 tgatgacagtcagtcattcactatttttagagtctttttcatgatattttg-agttcacaagcaagtttaaacaacaaagaaaacnnnnnnnntagaaga 164  Q
    |||||||||||  ||||||   ||||||||||||||||| ||||||||||  |||||||||||||| |||| ||||||  ||| |        || ||||    
T  14420864 tgatgacagtctctcattccacatttttagagtcttttt-atgatattttttagttcacaagcaagcttaagcaacaagaaaagcaagaaaaatataaga 14420962  T
Q  165 tttcgaagaaagcaaaatcgtgtcacgattgttgaaaacgtggcacgatttggagcacaggatga 229  Q
    ||| ||||||||||||||||| |||||||||||||||||||| ||||||||||| ||||||||||    
T  14420963 ttttgaagaaagcaaaatcgtatcacgattgttgaaaacgtgtcacgatttggaacacaggatga 14421027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 66 - 229
Target Start/End: Complemental strand, 45156918 - 45156755
Alignment:
Q  66 tgatgacagtcagtcattcactatttttagagtctttttcatgatatttt-gagttcacaagcaagtttaaacaacaaagaaaacnnnnnnnntagaaga 164  Q
    ||||||||||   ||||||  |||||||||||||||||| |||||||||| ||||||||||||||| || | || |||  ||| |        |||||||    
T  45156918 tgatgacagtttatcattctatatttttagagtcttttt-atgatatttttgagttcacaagcaagctttagcagcaagaaaagcaagaaaaatagaaga 45156820  T
Q  165 tttcgaagaaagcaaaatcgtgtcacgattgttgaaaacgtggcacgatttggagcacaggatga 229  Q
    ||| |||||||||| ||||||||||||||||||||||| ||| ||||||||||||||||||||||    
T  45156819 ttttgaagaaagcacaatcgtgtcacgattgttgaaaatgtgtcacgatttggagcacaggatga 45156755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 3 - 65
Target Start/End: Complemental strand, 40420180 - 40420118
Alignment:
Q  3 tcagtatgatgaaatatacaaatactatgggttctacaataaacatattacatcaaaatttta 65  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40420180 tcagaatgatgaaatatacaaatactatgggttctacaataaacatattacatcaaaatttta 40420118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 158 - 229
Target Start/End: Complemental strand, 5540903 - 5540832
Alignment:
Q  158 tagaagatttcgaagaaagcaaaatcgtgtcacgattgttgaaaacgtggcacgatttggagcacaggatga 229  Q
    |||||||||| |||| |||||||||| |||||||||||||||||||||| ||||||||| ||||||||||||    
T  5540903 tagaagattttgaaggaagcaaaatcatgtcacgattgttgaaaacgtgtcacgatttgaagcacaggatga 5540832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 66 - 147
Target Start/End: Complemental strand, 18826834 - 18826753
Alignment:
Q  66 tgatgacagtcagtcattcactatttttagagtctttttcatgat-attttgagttcacaagcaagtttaaacaacaaagaaa 147  Q
    ||||||||||||||||||  ||||||||||||||||||| ||||| |||||||||||||||||||  ||||||||||| ||||    
T  18826834 tgatgacagtcagtcatttgctatttttagagtcttttt-atgataattttgagttcacaagcaaacttaaacaacaaggaaa 18826753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 66 - 142
Target Start/End: Original strand, 19792926 - 19793004
Alignment:
Q  66 tgatgacagtcagtcattcactatttttagagtctttttcatgata-ttttgagttcacaagc-aagtttaaacaacaa 142  Q
    ||||||||||| | ||||||||||||||||||||||||| |||||| |||||||||||||||| ||| |||||||||||    
T  19792926 tgatgacagtcggccattcactatttttagagtcttttttatgatatttttgagttcacaagcaaagattaaacaacaa 19793004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 66 - 147
Target Start/End: Complemental strand, 14589816 - 14589735
Alignment:
Q  66 tgatgacagtcagtcattcactatttttagagtctttttcatgatattttgagttcacaagcaagtttaaacaacaaagaaa 147  Q
    |||||| ||| ||||||||| ||||||||| ||| |||||||||| ||||||||||||||||||| ||| ||||||| ||||    
T  14589816 tgatgatagttagtcattcattatttttagtgtcattttcatgatgttttgagttcacaagcaagcttacacaacaaggaaa 14589735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 158 - 229
Target Start/End: Original strand, 25228106 - 25228175
Alignment:
Q  158 tagaagatttcgaagaaagcaaaatcgtgtcacgattgttgaaaacgtggcacgatttggagcacaggatga 229  Q
    |||||||||| |||||||  ||||||||||| |||||| |||||||||| |||||||||||||||| |||||    
T  25228106 tagaagattttgaagaaa--aaaatcgtgtctcgattgctgaaaacgtgtcacgatttggagcacatgatga 25228175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 4 - 60
Target Start/End: Complemental strand, 40422867 - 40422811
Alignment:
Q  4 cagtatgatgaaatatacaaatactatgggttctacaataaacatattacatcaaaa 60  Q
    ||||||||| ||||||||||||| ||||| |||||| ||||||||||||||||||||    
T  40422867 cagtatgataaaatatacaaatagtatggattctacgataaacatattacatcaaaa 40422811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 66 - 147
Target Start/End: Complemental strand, 22174891 - 22174810
Alignment:
Q  66 tgatgacagtcagtcattcactatttttagagtctttttcatgatatttt-gagttcacaagcaagtttaaacaacaaagaaa 147  Q
    ||||||||||||| |||||| |||||| || ||| |||||||||| |||| ||||||||||||||| ||||||||||| ||||    
T  22174891 tgatgacagtcagccattcattatttt-agtgtcattttcatgatgtttttgagttcacaagcaagcttaaacaacaaggaaa 22174810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 66 - 135
Target Start/End: Complemental strand, 5981220 - 5981151
Alignment:
Q  66 tgatgacagtcagtcatt-cactatttttagagtctttttcatgatatttt-gagttcacaagcaagtttaa 135  Q
    ||||||||||| |||||| ||| ||||||||||||||||| |||||||||| ||||||||||||||||||||    
T  5981220 tgatgacagtccgtcatttcac-atttttagagtcttttt-atgatatttttgagttcacaagcaagtttaa 5981151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 66 - 135
Target Start/End: Original strand, 30640505 - 30640576
Alignment:
Q  66 tgatgacagtcagtcattcactatttttagagtc-tttttcatgata-ttttgagttcacaagcaagtttaa 135  Q
    |||||||||||| |||||||||||||| ||| || ||||| |||||| ||||||||||||||||||| ||||    
T  30640505 tgatgacagtcaatcattcactattttaagaatctttttttatgatacttttgagttcacaagcaagcttaa 30640576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 66 - 135
Target Start/End: Original strand, 12582218 - 12582287
Alignment:
Q  66 tgatgacagtcagtcattcactatttttagagtctttttcatgata-ttttgagttcacaagcaagtttaa 135  Q
    |||||| | ||| |||||| ||||||||||||||||||| |||||| ||||||||||||||||||| ||||    
T  12582218 tgatgaaaatcaatcattcgctatttttagagtcttttt-atgatatttttgagttcacaagcaagattaa 12582287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 66 - 104
Target Start/End: Original strand, 20261647 - 20261685
Alignment:
Q  66 tgatgacagtcagtcattcactatttttagagtcttttt 104  Q
    ||||||||||||||||| |||||||||||||||||||||    
T  20261647 tgatgacagtcagtcatacactatttttagagtcttttt 20261685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 66 - 104
Target Start/End: Original strand, 21048277 - 21048315
Alignment:
Q  66 tgatgacagtcagtcattcactatttttagagtcttttt 104  Q
    ||||||||||||||||| |||||||||||||||||||||    
T  21048277 tgatgacagtcagtcatacactatttttagagtcttttt 21048315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 65 - 104
Target Start/End: Complemental strand, 41779926 - 41779887
Alignment:
Q  65 atgatgacagtcagtcattcactatttttagagtcttttt 104  Q
    |||||||||| ||||||||||||||||||| |||||||||    
T  41779926 atgatgacagacagtcattcactatttttaaagtcttttt 41779887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 66 - 104
Target Start/End: Original strand, 13096050 - 13096088
Alignment:
Q  66 tgatgacagtcagtcattcactatttttagagtcttttt 104  Q
    |||||||||||||| |||||||||||||||||| |||||    
T  13096050 tgatgacagtcagttattcactatttttagagttttttt 13096088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 66 - 104
Target Start/End: Original strand, 16952998 - 16953036
Alignment:
Q  66 tgatgacagtcagtcattcactatttttagagtcttttt 104  Q
    ||||||||||| ||||||| |||||||||||||||||||    
T  16952998 tgatgacagtccgtcattcgctatttttagagtcttttt 16953036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 66 - 104
Target Start/End: Original strand, 31984107 - 31984145
Alignment:
Q  66 tgatgacagtcagtcattcactatttttagagtcttttt 104  Q
    |||||||||||| |||||| |||||||||||||||||||    
T  31984107 tgatgacagtcaatcattcgctatttttagagtcttttt 31984145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #27
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 66 - 130
Target Start/End: Complemental strand, 5540995 - 5540931
Alignment:
Q  66 tgatgacagtcagtcattcactatttttagagtctttttcatgatatttt-gagttcacaagcaag 130  Q
    ||||||||||  |||||||   ||||||||||||||||| |||||||||| |||||||||||||||    
T  5540995 tgatgacagtttgtcattccacatttttagagtcttttt-atgatatttttgagttcacaagcaag 5540931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #28
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 193 - 229
Target Start/End: Original strand, 20520079 - 20520115
Alignment:
Q  193 ttgttgaaaacgtggcacgatttggagcacaggatga 229  Q
    |||||||||||||| ||||||||||| ||||||||||    
T  20520079 ttgttgaaaacgtgtcacgatttggaacacaggatga 20520115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #29
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 181 - 229
Target Start/End: Original strand, 30640624 - 30640672
Alignment:
Q  181 atcgtgtcacgattgttgaaaacgtggcacgatttggagcacaggatga 229  Q
    |||||||||||||||||||||||||| |||  |||||| |||| |||||    
T  30640624 atcgtgtcacgattgttgaaaacgtgtcacactttggatcacaagatga 30640672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0005 (Bit Score: 95; Significance: 1e-46; HSPs: 2)
Name: scaffold0005
Description:

Target: scaffold0005; HSP #1
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 77 - 227
Target Start/End: Original strand, 290974 - 291124
Alignment:
Q  77 agtcattcactatttttagagtctttttcatgatattttgagttcacaagcaagtttaaacaacaaagaaaacnnnnnnnntagaagatttcgaagaaag 176  Q
    ||||||||||||||||||| ||| ||||||||||||||| |||||||||||||||||||||||||||||||||        |||||||||| || |||||    
T  290974 agtcattcactatttttagtgtcattttcatgatattttaagttcacaagcaagtttaaacaacaaagaaaacaagaaaaatagaagattttgaggaaag 291073  T
Q  177 caaaatcgtgtcacgattgttgaaaacgtggcacgatttggagcacaggat 227  Q
    |||| | ||||||||||||||||||||||| ||||||||||||||||||||    
T  291074 caaatttgtgtcacgattgttgaaaacgtgtcacgatttggagcacaggat 291124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0005; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 66 - 184
Target Start/End: Complemental strand, 246350 - 246232
Alignment:
Q  66 tgatgacagtcagtcattcactatttttagagtctttttcatgatatttt-gagttcacaagcaagtttaaacaacaaagaaaacnnnnnnnntagaaga 164  Q
    ||||||| ||| |||||||   ||||||||||||||||| |||||||||| ||||||||||||||| |||| || |||  ||| |        |||||||    
T  246350 tgatgacggtctgtcattccacatttttagagtcttttt-atgatatttttgagttcacaagcaagcttaagcagcaagaaaagcaagaaaaatagaaga 246252  T
Q  165 tttcgaagaaagcaaaatcg 184  Q
    ||| ||||||||||||||||    
T  246251 ttttgaagaaagcaaaatcg 246232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0035 (Bit Score: 93; Significance: 2e-45; HSPs: 1)
Name: scaffold0035
Description:

Target: scaffold0035; HSP #1
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 65 - 229
Target Start/End: Original strand, 61596 - 61760
Alignment:
Q  65 atgatgacagtcagtcattcactatttttagagtctttttcatgatattttgagttcacaagcaagtttaaacaacaaagaaaacnnnnnnnntagaaga 164  Q
    ||||||||||||||||||||||| ||||||| ||| |||||||||||||||||||||||||||||| |||||||||||||||| |        |||||||    
T  61596 atgatgacagtcagtcattcactgtttttagtgtcattttcatgatattttgagttcacaagcaagcttaaacaacaaagaaatcaagagaaatagaaga 61695  T
Q  165 tttcgaagaaagcaaaatcgtgtcacgattgttgaaaacgtggcacgatttggagcacaggatga 229  Q
    |||  ||||||||||||||||||||||||||| ||||||||| ||||||||| | |||| |||||    
T  61696 ttttaaagaaagcaaaatcgtgtcacgattgtcgaaaacgtgtcacgatttgaaacacaagatga 61760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 93; Significance: 2e-45; HSPs: 22)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 66 - 229
Target Start/End: Complemental strand, 5739190 - 5739026
Alignment:
Q  66 tgatgacagtcagtcattcactatttttagagtcttttt-catgatattttgagttcacaagcaagtttaaacaacaaagaaaacnnnnnnnntagaaga 164  Q
    ||||||||||||||||||||||||||||||||| ||||| |||||||| |||||||||||||||||| |||||| |||||||| |        |||||||    
T  5739190 tgatgacagtcagtcattcactatttttagagttttttttcatgatatgttgagttcacaagcaagtctaaacagcaaagaaagcaagaaaaatagaaga 5739091  T
Q  165 tttcgaagaaagcaaaatcgtgtcacgattgttgaaaacgtggcacgatttggagcacaggatga 229  Q
    ||| ||||||||||||||||||||||||||||| ||||| || |||||||||||||| |||||||    
T  5739090 ttttgaagaaagcaaaatcgtgtcacgattgttaaaaacatgtcacgatttggagcaaaggatga 5739026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 70 - 229
Target Start/End: Complemental strand, 23379810 - 23379650
Alignment:
Q  70 gacagtcagtcattcactatttttagagtctttttcatgatattttgagttcacaagcaagtttaaacaacaaagaaaacnnnnnnnntagaaga-tttc 168  Q
    |||||||||||||||||| ||||||| ||| |||||||||||||||||||||||| ||||| ||||||||||||||||||        ||||||| |||     
T  23379810 gacagtcagtcattcactgtttttagtgtcattttcatgatattttgagttcacatgcaagcttaaacaacaaagaaaacaagaaaaatagaagattttt 23379711  T
Q  169 gaagaaagcaaaatcgtgtcacgattgttgaaaacgtggcacgatttggagcacaggatga 229  Q
    |||||||||||||| ||||||||||||||||||||||| |||||||||||||||| |||||    
T  23379710 gaagaaagcaaaattgtgtcacgattgttgaaaacgtgtcacgatttggagcacatgatga 23379650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 70 - 229
Target Start/End: Complemental strand, 23389149 - 23388989
Alignment:
Q  70 gacagtcagtcattcactatttttagagtctttttcatgatattttgagttcacaagcaagtttaaacaacaaagaaaacnnnnnnnntagaaga-tttc 168  Q
    |||||||||||||||||| ||||||| ||| |||||||||||||||||||||||| ||||| ||||||| ||||||||||        ||||||| |||     
T  23389149 gacagtcagtcattcactgtttttagtgtcattttcatgatattttgagttcacatgcaagcttaaacagcaaagaaaacaagaaaaatagaagattttt 23389050  T
Q  169 gaagaaagcaaaatcgtgtcacgattgttgaaaacgtggcacgatttggagcacaggatga 229  Q
    |||||||||||||| ||||||||||||||||||||||| |||||||||||||||| |||||    
T  23389049 gaagaaagcaaaattgtgtcacgattgttgaaaacgtgtcacgatttggagcacatgatga 23388989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 66 - 229
Target Start/End: Original strand, 34501416 - 34501577
Alignment:
Q  66 tgatgacagtcagtcattcactatttttagagtctttttcatgatattttgagttcacaagcaagtttaaacaacaaagaaaacnnnnnnnntagaagat 165  Q
    ||||||||||| |||||||  || |||||  ||| |||||||||| ||  ||||||||||||||||||||||| ||||||||||         |||||||    
T  34501416 tgatgacagtccgtcattcgttaattttaatgtcattttcatgatgtt--gagttcacaagcaagtttaaacagcaaagaaaacaagaaaaaaagaagat 34501513  T
Q  166 ttcgaagaaagcaaaatcgtgtcacgattgttgaaaacgtggcacgatttggagcacaggatga 229  Q
    || || ||||||||||| ||||||||||||||||||||||| |||||||||||||| |||||||    
T  34501514 tttgatgaaagcaaaattgtgtcacgattgttgaaaacgtgtcacgatttggagcataggatga 34501577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 66 - 229
Target Start/End: Original strand, 9953036 - 9953199
Alignment:
Q  66 tgatgacagtcagtcatt-cactatttttagagtctttttcatgatatttt-gagttcacaagcaagtttaaacaacaaagaaaacnnnnnnnntagaag 163  Q
    ||||||||||| |||||| ||| ||||||||||||||||| |||||||||| ||||||||||||||| |||| || |||  ||| |        ||||||    
T  9953036 tgatgacagtctgtcatttcac-atttttagagtcttttt-atgatatttttgagttcacaagcaagcttaagcagcaagaaaaccaagaaaaatagaag 9953133  T
Q  164 atttcgaagaaagcaaaatcgtgtcacgattgttgaaaacgtggcacgatttggagcacaggatga 229  Q
    |||| ||||||||||||||| |||||||||||||||||||||| ||||||||||||||||| ||||    
T  9953134 attttgaagaaagcaaaatcatgtcacgattgttgaaaacgtgtcacgatttggagcacagaatga 9953199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 67 - 202
Target Start/End: Original strand, 2371414 - 2371549
Alignment:
Q  67 gatgacagtcagtcattcactatttttagagtctttttcatgatattttgagttcacaagcaagtttaaacaacaaagaaaacnnnnnnnntagaagatt 166  Q
    ||||| ||| ||| ||||||||||||||  || ||||| ||||||||||||||||| ||||||||||||||| |||| |||||        |||||||||    
T  2371414 gatgatagttagttattcactatttttaatgttttttttatgatattttgagttcataagcaagtttaaacagcaaataaaacaagaaaaatagaagatt 2371513  T
Q  167 tcgaagaaagcaaaatcgtgtcacgattgttgaaaa 202  Q
    | ||||||||||||||||| ||||||||||||||||    
T  2371514 ttgaagaaagcaaaatcgtatcacgattgttgaaaa 2371549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 64 - 147
Target Start/End: Original strand, 31071492 - 31071575
Alignment:
Q  64 tatgatgacagtcagtcattcactatttttagagtctttttcatgatattttgagttcacaagcaagtttaaacaacaaagaaa 147  Q
    |||||||||||||||||||||  ||||||||| ||| |||||||||| |||||||||||| |||||| ||||||||||| ||||    
T  31071492 tatgatgacagtcagtcattctttatttttagtgtcattttcatgatgttttgagttcacgagcaagcttaaacaacaaggaaa 31071575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 66 - 142
Target Start/End: Original strand, 10289186 - 10289262
Alignment:
Q  66 tgatgacagtcagtcattcactatttttagagtctttttcatgata-ttttgagttcacaagcaagtttaaacaacaa 142  Q
    |||||||||| |||||||| ||||||||||||||||||| |||||| ||||||||||||||||||| |||| ||||||    
T  10289186 tgatgacagtaagtcattcgctatttttagagtcttttt-atgatatttttgagttcacaagcaagattaagcaacaa 10289262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 66 - 135
Target Start/End: Complemental strand, 28666176 - 28666107
Alignment:
Q  66 tgatgacagtcagtcattcactatttttagagtctttttcatgata-ttttgagttcacaagcaagtttaa 135  Q
    |||||||||||||||||||  |||||||||||||||||| |||||| ||||||||||||||||||| ||||    
T  28666176 tgatgacagtcagtcattcgttatttttagagtcttttt-atgatatttttgagttcacaagcaagcttaa 28666107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 66 - 103
Target Start/End: Complemental strand, 12981188 - 12981151
Alignment:
Q  66 tgatgacagtcagtcattcactatttttagagtctttt 103  Q
    ||||||||||||||||||||||||||||||||||||||    
T  12981188 tgatgacagtcagtcattcactatttttagagtctttt 12981151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 65 - 104
Target Start/End: Complemental strand, 9314805 - 9314766
Alignment:
Q  65 atgatgacagtcagtcattcactatttttagagtcttttt 104  Q
    |||||||||||||||||| |||||||||||||||||||||    
T  9314805 atgatgacagtcagtcatacactatttttagagtcttttt 9314766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 65 - 104
Target Start/End: Original strand, 28116939 - 28116978
Alignment:
Q  65 atgatgacagtcagtcattcactatttttagagtcttttt 104  Q
    |||||||||||||||||| |||||||||||||||||||||    
T  28116939 atgatgacagtcagtcatacactatttttagagtcttttt 28116978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 66 - 104
Target Start/End: Original strand, 21633551 - 21633589
Alignment:
Q  66 tgatgacagtcagtcattcactatttttagagtcttttt 104  Q
    ||||||||||||||||| |||||||||||||||||||||    
T  21633551 tgatgacagtcagtcatacactatttttagagtcttttt 21633589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 66 - 104
Target Start/End: Original strand, 22463515 - 22463553
Alignment:
Q  66 tgatgacagtcagtcattcactatttttagagtcttttt 104  Q
    ||||||||||||||||| |||||||||||||||||||||    
T  22463515 tgatgacagtcagtcatacactatttttagagtcttttt 22463553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 63 - 104
Target Start/End: Original strand, 2378432 - 2378473
Alignment:
Q  63 ttatgatgacagtcagtcattcactatttttagagtcttttt 104  Q
    |||||||||||||| ||||||| |||||||||||||||||||    
T  2378432 ttatgatgacagtccgtcattcgctatttttagagtcttttt 2378473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 68 - 104
Target Start/End: Complemental strand, 9840357 - 9840321
Alignment:
Q  68 atgacagtcagtcattcactatttttagagtcttttt 104  Q
    ||||||| |||||||||||||||||||||||||||||    
T  9840357 atgacagccagtcattcactatttttagagtcttttt 9840321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 103 - 142
Target Start/End: Complemental strand, 13022244 - 13022205
Alignment:
Q  103 ttcatgatattttgagttcacaagcaagtttaaacaacaa 142  Q
    |||||||||||| ||||||||||||||| |||||||||||    
T  13022244 ttcatgatatttggagttcacaagcaagcttaaacaacaa 13022205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 103 - 149
Target Start/End: Original strand, 6512433 - 6512479
Alignment:
Q  103 ttcatgatattttgagttcacaagcaagtttaaacaacaaagaaaac 149  Q
    |||||||| ||||||||||||||||||| ||||||| ||| ||||||    
T  6512433 ttcatgatcttttgagttcacaagcaagcttaaacagcaaggaaaac 6512479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 66 - 104
Target Start/End: Original strand, 15543215 - 15543253
Alignment:
Q  66 tgatgacagtcagtcattcactatttttagagtcttttt 104  Q
    ||||||||||| ||||||| |||||||||||||||||||    
T  15543215 tgatgacagtccgtcattcgctatttttagagtcttttt 15543253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 66 - 99
Target Start/End: Original strand, 28848037 - 28848070
Alignment:
Q  66 tgatgacagtcagtcattcactatttttagagtc 99  Q
    ||||||||||||||||| ||||||||||||||||    
T  28848037 tgatgacagtcagtcatacactatttttagagtc 28848070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 103 - 147
Target Start/End: Original strand, 5259114 - 5259158
Alignment:
Q  103 ttcatgatattttgagttcacaagcaagtttaaacaacaaagaaa 147  Q
    |||||||| ||||||||||| ||||||| ||||||||||| ||||    
T  5259114 ttcatgatcttttgagttcagaagcaagcttaaacaacaaggaaa 5259158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 183 - 215
Target Start/End: Complemental strand, 13004643 - 13004611
Alignment:
Q  183 cgtgtcacgattgttgaaaacgtggcacgattt 215  Q
    |||||||||||||||||||||||| ||||||||    
T  13004643 cgtgtcacgattgttgaaaacgtgtcacgattt 13004611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0334 (Bit Score: 66; Significance: 3e-29; HSPs: 1)
Name: scaffold0334
Description:

Target: scaffold0334; HSP #1
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 66 - 190
Target Start/End: Original strand, 18463 - 18588
Alignment:
Q  66 tgatgacagtcagtcattcactatttttagagtctttttcatgatattttgagttcacaagcaagtttaaacaacaaagaaaacnnnnnnnntagaaga- 164  Q
    |||||||||||||||||||||| ||||||| ||| |||||||||||||||||||||||| ||||| ||||||||||||||||||        |||||||     
T  18463 tgatgacagtcagtcattcactgtttttagtgtcattttcatgatattttgagttcacatgcaagcttaaacaacaaagaaaacaagaaaaatagaagat 18562  T
Q  165 tttcgaagaaagcaaaatcgtgtcac 190  Q
    ||| ||||||||||||| ||||||||    
T  18563 ttttgaagaaagcaaaaacgtgtcac 18588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0080 (Bit Score: 60; Significance: 1e-25; HSPs: 1)
Name: scaffold0080
Description:

Target: scaffold0080; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 158 - 229
Target Start/End: Original strand, 26337 - 26408
Alignment:
Q  158 tagaagatttcgaagaaagcaaaatcgtgtcacgattgttgaaaacgtggcacgatttggagcacaggatga 229  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||    
T  26337 tagaagattttgaagaaagcaaaatcgtgtcacgattgttgaaaacgtgtcacgatttgaagcacaggatga 26408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0045 (Bit Score: 54; Significance: 4e-22; HSPs: 1)
Name: scaffold0045
Description:

Target: scaffold0045; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 66 - 147
Target Start/End: Original strand, 88965 - 89046
Alignment:
Q  66 tgatgacagtcagtcattcactatttttagagtctttttcatgatattttgagttcacaagcaagtttaaacaacaaagaaa 147  Q
    |||||||||||||||||||  ||||||||| ||| |||||||||| ||||||||||||||||||| ||||||||||| ||||    
T  88965 tgatgacagtcagtcattcgttatttttagtgtcattttcatgatgttttgagttcacaagcaagcttaaacaacaaggaaa 89046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0757 (Bit Score: 51; Significance: 2e-20; HSPs: 1)
Name: scaffold0757
Description:

Target: scaffold0757; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 66 - 135
Target Start/End: Original strand, 4563 - 4632
Alignment:
Q  66 tgatgacagtcagtcattcactatttttagagtctttttcatgata-ttttgagttcacaagcaagtttaa 135  Q
    ||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||| ||||    
T  4563 tgatgacagtcagtcattcactatttttagagtcttttt-atgatatttttgagttcacaagcaagcttaa 4632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1684 (Bit Score: 50; Significance: 9e-20; HSPs: 1)
Name: scaffold1684
Description:

Target: scaffold1684; HSP #1
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 65 - 142
Target Start/End: Complemental strand, 475 - 398
Alignment:
Q  65 atgatgacagtcagtcattcactatttttagagtctttttcatgatattttgagttcacaagcaagtttaaacaacaa 142  Q
    ||||||| ||||||||||||  ||||||||| ||| |||||||||| ||||||||||||||||||| |||||||||||    
T  475 atgatgaaagtcagtcattctttatttttagtgtcattttcatgatgttttgagttcacaagcaagcttaaacaacaa 398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0381 (Bit Score: 50; Significance: 9e-20; HSPs: 1)
Name: scaffold0381
Description:

Target: scaffold0381; HSP #1
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 66 - 142
Target Start/End: Complemental strand, 6554 - 6477
Alignment:
Q  66 tgatgacagtcagtcattcactatttttagagtctttttcatgata-ttttgagttcacaagcaagtttaaacaacaa 142  Q
    ||||||||||||||||||| ||||||||||||||||||| |||||| ||||||||||||| ||||| |||| ||||||    
T  6554 tgatgacagtcagtcattcgctatttttagagtcttttttatgatatttttgagttcacaggcaagcttaagcaacaa 6477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0567 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 1)
Name: scaffold0567
Description:

Target: scaffold0567; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 66 - 104
Target Start/End: Complemental strand, 7055 - 7017
Alignment:
Q  66 tgatgacagtcagtcattcactatttttagagtcttttt 104  Q
    |||||||||||||||||||||||||||||||||||||||    
T  7055 tgatgacagtcagtcattcactatttttagagtcttttt 7017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0520 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 1)
Name: scaffold0520
Description:

Target: scaffold0520; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 66 - 135
Target Start/End: Complemental strand, 4880 - 4811
Alignment:
Q  66 tgatgacagtcagtcattcactatttttagagtctttttcatgata-ttttgagttcacaagcaagtttaa 135  Q
    |||||||||||||||||||  |||||||||||||||||| |||||| |||||||||||||| |||| ||||    
T  4880 tgatgacagtcagtcattcgttatttttagagtcttttt-atgatatttttgagttcacaaacaagattaa 4811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0270 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 3)
Name: scaffold0270
Description:

Target: scaffold0270; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 66 - 135
Target Start/End: Complemental strand, 1060 - 991
Alignment:
Q  66 tgatgacagtcagtcattcactatttttagagtctttttcatgata-ttttgagttcacaagcaagtttaa 135  Q
    ||||||||||||||||||| ||| ||||||||| ||||| |||||| ||||||||||||||||||| ||||    
T  1060 tgatgacagtcagtcattcgctacttttagagtattttt-atgatatttttgagttcacaagcaagcttaa 991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0270; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 66 - 135
Target Start/End: Complemental strand, 4420 - 4351
Alignment:
Q  66 tgatgacagtcagtcattcactatttttagagtctttttcatgata-ttttgagttcacaagcaagtttaa 135  Q
    ||||| ||||||||||||| ||| ||||||||||||||| |||||| ||||||||||||||||||| ||||    
T  4420 tgatgtcagtcagtcattcgctacttttagagtcttttt-atgatatttttgagttcacaagcaagcttaa 4351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0270; HSP #3
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 66 - 135
Target Start/End: Complemental strand, 11550 - 11481
Alignment:
Q  66 tgatgacagtcagtcattcactatttttagagtctttttcatgata-ttttgagttcacaagcaagtttaa 135  Q
    ||||| ||||||||||||| ||| ||||||||||||||| |||||| ||||||||||||||||||| ||||    
T  11550 tgatgtcagtcagtcattcgctacttttagagtcttttt-atgatatttttgagttcacaagcaagcttaa 11481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0015 (Bit Score: 34; Significance: 0.0000000003; HSPs: 2)
Name: scaffold0015
Description:

Target: scaffold0015; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 66 - 130
Target Start/End: Original strand, 197242 - 197306
Alignment:
Q  66 tgatgacagtcagtcattcactatttttagagtctttttcatgata-ttttgagttcacaagcaag 130  Q
    ||||||||||| |||||||   ||||||||||||||||| |||||| |||||||||||||||||||    
T  197242 tgatgacagtctgtcattccacatttttagagtcttttt-atgatatttttgagttcacaagcaag 197306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0015; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 192 - 229
Target Start/End: Original strand, 197357 - 197394
Alignment:
Q  192 attgttgaaaacgtggcacgatttggagcacaggatga 229  Q
    ||||||||||||||| ||||||||| ||||||||||||    
T  197357 attgttgaaaacgtgtcacgatttgaagcacaggatga 197394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1026 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold1026
Description:

Target: scaffold1026; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 66 - 104
Target Start/End: Complemental strand, 2601 - 2563
Alignment:
Q  66 tgatgacagtcagtcattcactatttttagagtcttttt 104  Q
    |||||||| |||||||||| |||||||||||||||||||    
T  2601 tgatgacaatcagtcattcgctatttttagagtcttttt 2563  T

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Target: scaffold0014 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0014
Description:

Target: scaffold0014; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 66 - 104
Target Start/End: Original strand, 226465 - 226503
Alignment:
Q  66 tgatgacagtcagtcattcactatttttagagtcttttt 104  Q
    |||||||||||| |||||| |||||||||||||||||||    
T  226465 tgatgacagtcaatcattcgctatttttagagtcttttt 226503  T

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Target: scaffold1993 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold1993
Description:

Target: scaffold1993; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 65 - 116
Target Start/End: Original strand, 1044 - 1094
Alignment:
Q  65 atgatgacagtcagtca-ttcactatttttagagtctttttcatgatattttg 116  Q
    ||||||||||||||||| ||||| ||||||||||||||||| |||||||||||    
T  1044 atgatgacagtcagtcatttcac-atttttagagtcttttt-atgatattttg 1094  T

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