View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11721_high_8 (Length: 723)

Name: NF11721_high_8
Description: NF11721
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11721_high_8
NF11721_high_8
[»] chr5 (1 HSPs)
chr5 (18-707)||(2354233-2354935)


Alignment Details
Target: chr5 (Bit Score: 494; Significance: 0; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 494; E-Value: 0
Query Start/End: Original strand, 18 - 707
Target Start/End: Original strand, 2354233 - 2354935
Alignment:
Q  18 acttgctcccttctgctggtgtcagaaatttggttcaatatccaaagaccgaaacgattttcatgttgctttcagtctcaattccatgtgccacttgact 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2354233 acttgctcccttctgctggtgtcagaaatttggttcaatatccaaagaccgaaacgattttcatgttgctttcagtctcaattccatgtgccacttgact 2354332  T
Q  118 tgttagagatccctgtcttgnnnnnnnnnnnnnnnnnattgggagcaggccttaaatttggccaaaacaaaatataaagacgcaaaaggacctcattggt 217  Q
    ||||||||||||||||||||                 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2354333 tgttagagatccctgtcttgttttttcttttgcttttattgggagcaggccttaaatttggccaaaacaaaatataaagacgcaaaaggacctcattggt 2354432  T
Q  218 tattcaagttttggcttttgagggaaccaaaagttctggcgnnnnnnnnnnnnnnnnnnnnctgtccacacccatattagcttcttaattactagttcat 317  Q
    |||||||||||||||||||||||||||||||||||||||||                    |||||||||||||||||||||||||||||||||||||||    
T  2354433 tattcaagttttggcttttgagggaaccaaaagttctggcgttttcttttgttttatttttctgtccacacccatattagcttcttaattactagttcat 2354532  T
Q  318 cacaaaattaaaaaggagaatatccttttcattttagttttttcttacaaacttgatgtgatcggaacttttaggagcctaaagaagaaatacgtttcat 417  Q
    |||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2354533 cacaaaattaaaaaggagaatatccttttcattttagttttttcgtactaacttgatgtgatcggaacttttaggagcctaaagaagaaatacgtttcat 2354632  T
Q  418 ccttcaaatgaatccc--------------ggtgagggatggactatgtcacgactcacgatatttcaaaaacaaaattcgacatcaacattgcatgtat 503  Q
    | ||||||||||||||              ||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  2354633 ctttcaaatgaatccctaactatattagtcggtgagg-atggactatgtcacaactcacgatatttcaaaaacaaaattcgacatcaacattgcatgtat 2354731  T
Q  504 atgtgatctacgattttaatattttttctctcattcagcaatttttacaccacacattctaattatattttatacaatgtcaaatatgatatttgactta 603  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2354732 atgtgatctacgattttcatattttttctctcattcagcaatttttacaccacacattctaattatattttatacaatgtcaaatatgatatttgactta 2354831  T
Q  604 tgtacttatatatggttttcgattttaatcatgttctctctcttcctctctcatcaattctgaaaccacgctacacacattttagctacaatgtaatatg 703  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||  ||||||| |||||| |||||||||||||||    
T  2354832 tgtacttatatattgttttcgattttaatcatgttctctctcttcctctctcatcaattttgaaaccatactacacatattttaactacaatgtaatatg 2354931  T
Q  704 atgt 707  Q
    ||||    
T  2354932 atgt 2354935  T

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