View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11721_high_81 (Length: 239)
Name: NF11721_high_81
Description: NF11721
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11721_high_81 |
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Alignment Details
Target: chr7 (Bit Score: 224; Significance: 1e-123; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 1 - 224
Target Start/End: Complemental strand, 30892887 - 30892664
Alignment:
| Q |
1 |
ccctccatgcccatcataaacaccaacaaatgtaccgtacggtccagaatcaccggaactcaaactacctgattcaatataactttggtcctccaataag |
100 |
Q |
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| T |
30892887 |
ccctccatgcccatcataaacaccaacaaatgtaccgtacggtccagaatcaccggaactcaaactacctgattcaatataactttggtcctccaataag |
30892788 |
T |
|
| Q |
101 |
ttgttggcttggaccacagccattgaaaactcaccattcaagtgcttccccgagtctttataccacaagagcccatcctgcttaccaccagaatctgaac |
200 |
Q |
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| T |
30892787 |
ttgttggcttggaccacagccattgaaaactcaccattcaagtgcttccccgagtctttataccacaagagcccatcctgcttaccaccagaatctgaac |
30892688 |
T |
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| Q |
201 |
cactgtgtgtatatcgatccaaac |
224 |
Q |
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|||||||||||||||||||||||| |
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| T |
30892687 |
cactgtgtgtatatcgatccaaac |
30892664 |
T |
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Target: chr1 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 2 - 191
Target Start/End: Complemental strand, 51133747 - 51133558
Alignment:
| Q |
2 |
cctccatgcccatcataaacaccaacaaatgtaccgtacggtccagaatcaccggaactcaaactacctgattcaatataactttggtcctccaataagt |
101 |
Q |
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|||||||| |||||||| ||||||||||| || || | || ||||| ||| ||||||||||||| |||||||| | || || || |||| |||| |
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| T |
51133747 |
cctccatgtccatcatagacaccaacaaaggttccatgagggccagactcattcaaactcaaactaccagattcaatctggctctgatcttccagcaagt |
51133648 |
T |
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| Q |
102 |
tgttggcttggaccacagccattgaaaactcaccattcaagtgcttccccgagtctttataccacaagagcccatcctgcttaccaccag |
191 |
Q |
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| T |
51133647 |
tattggcttgaactacagccatcgaaaaatcaccacatatgtgctgccctgagtctttataccataatagtccatcttgtttacctccag |
51133558 |
T |
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