View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11721_high_87 (Length: 235)
Name: NF11721_high_87
Description: NF11721
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11721_high_87 |
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Alignment Details
Target: chr7 (Bit Score: 203; Significance: 1e-111; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 1 - 219
Target Start/End: Complemental strand, 30056761 - 30056543
Alignment:
| Q |
1 |
tgctgggcattttctgctgtgggtgcactggaaggtatcgaacaaataactagtggaaatttagtgtccctttctgaacaagaacttgtggatcatgtca |
100 |
Q |
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| T |
30056761 |
tgctgggcattttctgctgtgggtgcactagaaggtatccaacaaataactagtggaaatttagtgtccctttctgaacaagaacttgtggatcgtgtca |
30056662 |
T |
|
| Q |
101 |
gaagtaattggacaaatggatgcaacggtggttatttgattgatgcttttgaattcgtcttagtaaacggtggaattgccacagaagcaagttatccgta |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
30056661 |
gaagtaattggacaaatggatgcaacggtggttatttgattgatgcttttgaattcgtcttagaaaacggtggaattgccacagaagcaagttatccgta |
30056562 |
T |
|
| Q |
201 |
cagaggagttaaaggaaat |
219 |
Q |
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||||||||||||||||||| |
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| T |
30056561 |
cagaggagttaaaggaaat |
30056543 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 4 - 219
Target Start/End: Original strand, 29746538 - 29746753
Alignment:
| Q |
4 |
tgggcattttctgctgtgggtgcactggaaggtatcgaacaaataactagtggaaatttagtgtccctttctgaacaagaacttgtggatcatgtcagaa |
103 |
Q |
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|||||||||||| | |||| |||| | ||||||||| |||||||||| |||||||||||||| ||| |||| || ||| ||||||||||| |||| || |
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| T |
29746538 |
tgggcattttctacggtggctgcaatagaaggtatccaacaaataaccagtggaaatttagtctccttttcagagcaacaacttgtggattgtgtcgcaa |
29746637 |
T |
|
| Q |
104 |
gtaattggacaaatggatgcaacggtggttatttgattgatgcttttgaattcgtcttagtaaacggtggaattgccacagaagcaagttatccgtacag |
203 |
Q |
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| T |
29746638 |
gtaattggaccaatggatgtaatggtggtaataagattgatgcttttaaattcaatttagaaaacggtggaattgccacagaagcaagttatccatacaa |
29746737 |
T |
|
| Q |
204 |
aggagttaaaggaaat |
219 |
Q |
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||||||||||||||| |
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| T |
29746738 |
gggagttaaaggaaat |
29746753 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 87; E-Value: 8e-42
Query Start/End: Original strand, 31 - 213
Target Start/End: Complemental strand, 29606599 - 29606417
Alignment:
| Q |
31 |
gaaggtatcgaacaaataactagtggaaatttagtgtccctttctgaacaagaacttgtggatcatgtcagaagtaattggacaaatggatgcaacggtg |
130 |
Q |
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||||||||| ||||||||| |||||||||||||| ||| |||| || ||| ||||||||||| ||||| |||||||||||| |||||||| || |||| |
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| T |
29606599 |
gaaggtatccaacaaataatcagtggaaatttagtctccttttcagagcaacaacttgtggattgtgtcacaagtaattggaccaatggatgtaatggtg |
29606500 |
T |
|
| Q |
131 |
gttatttgattgatgcttttgaattcgtcttagtaaacggtggaattgccacagaagcaagttatccgtacagaggagttaaa |
213 |
Q |
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| T |
29606499 |
gtaataagattgatgcttttaaattcattttagaaaacggtggaattgccacagaagcaagttatccatacaagggagttaaa |
29606417 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 1 - 202
Target Start/End: Complemental strand, 29733697 - 29733496
Alignment:
| Q |
1 |
tgctgggcattttctgctgtgggtgcactggaaggtatcgaacaaataactagtggaaatttagtgtccctttctgaacaagaacttgtggatcatgtca |
100 |
Q |
| |
|
|||||||||||||||||||||| ||| | ||||||||| || |||||||||||||||||||||| |||||||| || || ||||||||||| || | |
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| T |
29733697 |
tgctgggcattttctgctgtggctgcgatagaaggtatccaaaaaataactagtggaaatttagtttccctttcagagcagcaacttgtggattgtgata |
29733598 |
T |
|
| Q |
101 |
gaagtaattggacaaatggatgcaacggtggttatttgattgatgcttttgaattcgtcttagtaaacggtggaattgccacagaagcaagttatccgta |
200 |
Q |
| |
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||||| | |||| || ||||| | ||| || ||||| |||||||| ||||| | |||| ||| ||||||||||| |||||||||| |||||| || |
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| T |
29733597 |
gaagtggtcggactaaaggatgtgataacggtaatatgattaatgcttttaaattcattttagaaaatggtggaattgcgacagaagcaaattatccata |
29733498 |
T |
|
| Q |
201 |
ca |
202 |
Q |
| |
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|| |
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|
| T |
29733497 |
ca |
29733496 |
T |
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