View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11721_low_1 (Length: 888)
Name: NF11721_low_1
Description: NF11721
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11721_low_1 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 433; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 433; E-Value: 0
Query Start/End: Original strand, 421 - 878
Target Start/End: Complemental strand, 10970757 - 10970298
Alignment:
| Q |
421 |
ctaaattctaatgaaaattgattgctcaattagatttcatgagatcatgttaatctatgcattgaatttcattgaagccttatttgttaagggtttggat |
520 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10970757 |
ctaaattctaatggaaattgattgctcaattagatttcatgagatcatgttaatcaatgcattgaatttcattgaagccttatttgttaagggtttggat |
10970658 |
T |
|
| Q |
521 |
tttgtgcagtgatgtggtcatggatctcgactataagatgaagattagacttgtattatgattttaccaaatccactttaaaatatacatctcgtaatac |
620 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10970657 |
tttgtgcagtgatgtggtcatggatctcgactataagatgaagattagacttgtattatgattttaccaaatccactttaaaatatacatctcgtaatac |
10970558 |
T |
|
| Q |
621 |
aagtcatctgatcttcaattaacagttgggatctc--aactgcatgcttttcctgactgtgtagaatctagaatcgctaatgtaattgaatacttgaaac |
718 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10970557 |
aagtcatctgatcttcaattaacagttgggatctcttgactgcatgcttttcctgactgtgtagaatctagaatcgctaatgtaattgaatacttgaaac |
10970458 |
T |
|
| Q |
719 |
atctttagtactgaaatggaaatttatatgaacaaatacatatgctgcttcacttgtttataaaccattttctaataaattttcagaagaagcgctggag |
818 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10970457 |
atctttagtactgaaatggaaatttatatgaacaaatacctatgctgcttcacttgtttataaaccattttctaataaattttcagaagaagcgctggag |
10970358 |
T |
|
| Q |
819 |
atgaggaaaagatgttgttcctgtattttaatcgagtaagttgttcatcttttgtctgtg |
878 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10970357 |
atgaggaaaagatgttgttcctgtattttaatcgagtaagttgttcatcttttgtctgtg |
10970298 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 295; E-Value: 1e-165
Query Start/End: Original strand, 19 - 354
Target Start/End: Complemental strand, 10971174 - 10970825
Alignment:
| Q |
19 |
aataaaggtatcaacaattattctgtgttactgcttaccgtttaatttatatgatggaaaccggacactgacactttaacaccaatgatagtcgaggaaa |
118 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||| |
|
|
| T |
10971174 |
aataaaggtatcaacaattattctgtgttactgcttaccgtttaatttatatgatggaaaccggacactgacactttaacaccgataatagtcgaggaaa |
10971075 |
T |
|
| Q |
119 |
cgataaattcaatgtgtcggtgccgtttgatgt--------------acaccagatacgccttcaatcagaagtgtcggtgctatgctacgaagttgttc |
204 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10971074 |
cgataaattcaatgtgtcggtgccgtttgatgtggacactaacacgtacaccagatacgccttcaatcagaagtgtcggtgctatgctacgaagttgttc |
10970975 |
T |
|
| Q |
205 |
gtcaataattctgtagtctgtgtgtttgtgtttttctgtgttcatggagtgtaatgcggtgtcattttttcgaatttgatgttgtgattgcagcatttga |
304 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10970974 |
gtcaataattctgtagtctgtgtgtttgtgtttttctgtgttcatggagtgtaatgcggtgtcattttttcgaatttgatgttgtgattgcagcatttga |
10970875 |
T |
|
| Q |
305 |
gaagcttggacttgattgtgcgagttggaatgaacctgtctatacagatc |
354 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10970874 |
gaagcttggacttgattgtgcgagttggaatgaacctgtctatacagatc |
10970825 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 31; Significance: 0.00000008; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 152 - 190
Target Start/End: Original strand, 29647400 - 29647438
Alignment:
| Q |
152 |
acaccagatacgccttcaatcagaagtgtcggtgctatg |
190 |
Q |
| |
|
|||||||| ||| |||||||||||||||||||||||||| |
|
|
| T |
29647400 |
acaccagacacgtcttcaatcagaagtgtcggtgctatg |
29647438 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University