View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11721_low_12 (Length: 662)
Name: NF11721_low_12
Description: NF11721
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11721_low_12 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 574; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 574; E-Value: 0
Query Start/End: Original strand, 1 - 653
Target Start/End: Original strand, 35892864 - 35893512
Alignment:
| Q |
1 |
atgagcctttagagaagtccaaggaacgtcccctaacatctgttactgtgcctcctgcctcttgtatgatgatgaaaccagcagcatgatcccatatttt |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35892864 |
atgagcctttagagaagtccaaggaacgtcccctaacatctgttactgtgcctcctgcctcttgtatgatgatgaaaccagcagcatgatcccatatttt |
35892963 |
T |
|
| Q |
101 |
ctctttgtaaccagtccttgcaaacttcataaacacctcagcatccccacatgctagtgccacatatttcattatgctcttaactcctaatggtttattg |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35892964 |
ctctttgtaaccagtccttgcaaacttcataaacacctcagcatccccacatgctagtgccacatatttcattatgctcttaactcctaatggtttattg |
35893063 |
T |
|
| Q |
201 |
ctgcatacaacggatgaatatgagctttcttgtaaactaaaaaactataattctgttatcggaactatattatttttgtggcggcgacctttggaagtag |
300 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
35893064 |
ctgcatacaacggatgaatatgagctttcttgtaaactaaaaaactataattctgttatcggaactatattatttttgt---ggcgacctttggaagtag |
35893160 |
T |
|
| Q |
301 |
aagctcatggtgctcctcatcattacgattgagaagatgacatgatcaatgttagtttgataaaaataaggaaaaacaaatatgagttaagttttagaca |
400 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35893161 |
aagctcatggtgctcctcatcattacgattgagaagatgacatgatcaatgttagtttgataaaaataaggaaaaacaaatatgagttaagttttagaca |
35893260 |
T |
|
| Q |
401 |
cacatattcgnnnnnnnnnnngtcaattgacatcgatcaagtcactgtctcaactgtgaaaacgtgaaggaccgtgagcttctacttccagacgacagca |
500 |
Q |
| |
|
|| | || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
35893261 |
ca-tttttttttttttttttcatcaattgacatcgatcaagtcactgtctcaactgtgaaaacgtgaaggaccgtgagcttctacttccagaagacagca |
35893359 |
T |
|
| Q |
501 |
tttgtcacattgaagattcaaaagattttcaagtaccggttgtggaccacctatcaaagtggtccaccatagaatttgcttgcatattaaattaattgat |
600 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35893360 |
tttgtcacattgaagattcaaaagattttcaagtaccggttgtggaccacctatcaaagtggtccaccatagaatttgcttgcatattaaattaattgat |
35893459 |
T |
|
| Q |
601 |
aaagcttcgcggccacaatctgagctacaatatcaaattttttatgtctctgc |
653 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35893460 |
aaagcttcgcggccacaatctgagctacaatatcaaattttttatgtctctgc |
35893512 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 43; Significance: 0.000000000000004; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 60 - 150
Target Start/End: Complemental strand, 3113284 - 3113194
Alignment:
| Q |
60 |
tcttgtatgatgatgaaaccagcagcatgatcccatattttctctttgtaaccagtccttgcaaacttcataaacacctcagcatccccac |
150 |
Q |
| |
|
||||||||||| || | ||| ||||||||||||||||||||||| |||||||| | ||||||||| ||||| || ||||| ||||| |||| |
|
|
| T |
3113284 |
tcttgtatgataataacacctgcagcatgatcccatattttctccttgtaacctgcccttgcaaatttcatgaatacctctgcatctccac |
3113194 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 441 - 488
Target Start/End: Complemental strand, 10427416 - 10427369
Alignment:
| Q |
441 |
gtcactgtctcaactgtgaaaacgtgaaggaccgtgagcttctacttc |
488 |
Q |
| |
|
|||||| |||||||||||| |||| ||||||| ||||||||||||||| |
|
|
| T |
10427416 |
gtcactatctcaactgtgagaacgagaaggactgtgagcttctacttc |
10427369 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 81 - 130
Target Start/End: Original strand, 22700313 - 22700362
Alignment:
| Q |
81 |
gcagcatgatcccatattttctctttgtaaccagtccttgcaaacttcat |
130 |
Q |
| |
|
||||||||||||||||| |||||||||||||| | | ||||||| ||||| |
|
|
| T |
22700313 |
gcagcatgatcccatatcttctctttgtaacctgactttgcaaatttcat |
22700362 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University