View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11721_low_13 (Length: 652)
Name: NF11721_low_13
Description: NF11721
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11721_low_13 |
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Alignment Details
Target: chr5 (Bit Score: 334; Significance: 0; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 334; E-Value: 0
Query Start/End: Original strand, 14 - 412
Target Start/End: Original strand, 26204353 - 26204752
Alignment:
| Q |
14 |
agagagacacaagaatgatgaacaacattgagtatcgacatcaatcaatcaactcaactggaagcgtccatttcacccagataaaactcaagaacgacga |
113 |
Q |
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| T |
26204353 |
agagagacacaagaatgatgaacaacattgagtatcgacatcaatcaatcaactcaactggaagcgtccatttcacctagataaaactcaagaacgacga |
26204452 |
T |
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| Q |
114 |
catgaaaaccatatgcgtgatatctggtcagtataatgctaaaggaacgatcgagtttgatgcttccttggttagatctttcgaagatattacnnnnnnn |
213 |
Q |
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| T |
26204453 |
catgaaaaccatattcatgatatctggtcagtataatgctaaaggaacgatcgagtttgatgcttccttggttagatctttcgaagatattacaaaaaaa |
26204552 |
T |
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| Q |
214 |
ntattcggtccatgacataccaaaaaatcaagacatgcatggagaaaccggatgaagaagtcaatttgcttgattcgtgatcttttatgttgtttaatca |
313 |
Q |
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| T |
26204553 |
atatttggtccatgacataccaaaaaatcaagacatgcatggagaaaccggatgaagaagtcagtttgcttgattcgtgatcttttatgttgtttaatca |
26204652 |
T |
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| Q |
314 |
tgtcgtttaattaaacaacatgatatatcattcacaacataaaaaagt--aaaatatatttcaaatatactccctaaggacacatgttagtaaaaccctg |
411 |
Q |
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| T |
26204653 |
tgtcatttaattaaacaacatgatatatcattcacaacataaaaaagtaaaaaatatatttcaaatatact-cctaaggacacatgttagtaaaaccctg |
26204751 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 161; E-Value: 2e-85
Query Start/End: Original strand, 471 - 635
Target Start/End: Original strand, 26204811 - 26204975
Alignment:
| Q |
471 |
gttcacttcaacatcagtgtgattccaaagaagaatacattctggacataatcacaacgttaactttaattaccttttcaattatggcatttgtctactg |
570 |
Q |
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| T |
26204811 |
gttcacttcaacaacagtgtgattccaaagaagaatacattctggacataatcacaacgttaactttaattaccttttcaattatggcatttgtctactg |
26204910 |
T |
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| Q |
571 |
ctccactccagcaaacaaggtattgcagctgttagaataatcactgcacaaaatcatatataatc |
635 |
Q |
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| T |
26204911 |
ctccactccagcaaacaaggtattgcagctgttagaataatcactgcacaaaatcatatataatc |
26204975 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 152 - 204
Target Start/End: Original strand, 24249032 - 24249084
Alignment:
| Q |
152 |
ctaaaggaacgatcgagtttgatgcttccttggttagatctttcgaagatatt |
204 |
Q |
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| T |
24249032 |
ctaaaggaatgatcgacttggatgcttccttggtcaaatctttcgaagatatt |
24249084 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 36; Significance: 0.00000000006; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 41 - 204
Target Start/End: Complemental strand, 18044089 - 18043926
Alignment:
| Q |
41 |
ttgagtatcgacatcaatcaatcaactcaactggaagcgtccatttcacccagataaaactcaagaacgacgacatgaaaaccatatgcgtgatatctgg |
140 |
Q |
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|||| ||||||| || ||||||| ||||| | ||| || ||||||| ||| || || |||| |||||||||| |||||||||||| | ||||| | | |
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| T |
18044089 |
ttgattatcgacgtccatcaatcgactcagtcgaaagagtgcatttcagccaaatgaagctcaggaacgacgacgtgaaaaccatattctcgatattttg |
18043990 |
T |
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| Q |
141 |
tcagtataatgctaaaggaacgatcgagtttgatgcttccttggttagatctttcgaagatatt |
204 |
Q |
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| T |
18043989 |
tcagtacaatactaaaggaccgattgagttgaactcttctttggtcaggtctttcgaagatatt |
18043926 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 45 - 201
Target Start/End: Complemental strand, 43075120 - 43074962
Alignment:
| Q |
45 |
gtatcgacatcaatcaatcaactcaactggaagcgtccatttcacccagataaaactcaagaacgac--gacatgaaaaccatatgcgtgatatctggtc |
142 |
Q |
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|||||||| || ||||||| ||||| || ||||| |||| |||||||| || || |||| |||| || ||| ||| |||||| | | ||||| | ||| |
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| T |
43075120 |
gtatcgacgtccatcaatcgactcagctagaagcatccagttcacccatatgaagctcatgaacaacacgacgtgagaaccatgttctcgatatttagtc |
43075021 |
T |
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| Q |
143 |
agtataatgctaaaggaacgatcgagtttgatgcttccttggttagatctttcgaagat |
201 |
Q |
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| T |
43075020 |
agtatagttcgaaatgaccaatcgagttggacgcttccttggttggatctttcgaagat |
43074962 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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