View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11721_low_14 (Length: 644)

Name: NF11721_low_14
Description: NF11721
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11721_low_14
NF11721_low_14
[»] chr2 (1 HSPs)
chr2 (1-625)||(31528838-31529462)


Alignment Details
Target: chr2 (Bit Score: 545; Significance: 0; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 545; E-Value: 0
Query Start/End: Original strand, 1 - 625
Target Start/End: Complemental strand, 31529462 - 31528838
Alignment:
Q  1 actaaaaggggaaatgaaagacaagaagaacaagcaaatttttcaaagttcaagaaagattgaaagaagactaaagttaaaggttattcagtgatcaaac 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31529462 actaaaaggggaaatgaaagacaagaagaacaagcaaatttttcaaagttcaagaaagattgaaagaagactaaagttaaaggttattcagtgatcaaac 31529363  T
Q  101 tttacaagaaatagaacattcaaaacagtatcatagttgtgttgaggtccagtgtttctgtgcaacaattcagacatttatgttagggaagatcaataga 200  Q
    ||||||||||||||| |||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31529362 tttacaagaaatagagcattcaaaacagtatcataggtgtgttgagatccagtgtttctgtgcaacaattcagacatttatgttagggaagatcaataga 31529263  T
Q  201 atttgaagaactgattaaaagttagtggaaaatatgcatttgatgaagtaattttaagaactggttcgttgcttacactttttggttttcaatggcttca 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||    
T  31529262 atttgaagaactgattaaaagttagtggaaaatatgcatttgatgaagtaattttaagaactgattcgttggttacactttttggttttcaatggcttca 31529163  T
Q  301 tgtaataatctctactcatgtcttagtgtctactgagtgcacaaaattatggtcgtctttgtggctatatatgttgtaatcggtggcggagcccctcata 400  Q
    ||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     
T  31529162 tgtaataatctctactcatatcttagtggctactgagtgcacaaaattatggtcgtctttgtggctatatatgttgtaatcggtggcggagcccctcatg 31529063  T
Q  401 agttagggtgggccgtgacacacccataaaaatttaaacagtcaaaaccataggtccactttgctagattttaaactattttgtggtggttttagttttc 500  Q
    |||||||||||||| |||| || |||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31529062 agttagggtgggccatgactcatccataaaaatttaaacaggcaaaacaataggtccactttgctagattttaaactattttgtggtggttttagttttc 31528963  T
Q  501 agaagttccaaatattcgcaaaatggcatatgggattttcaccacgtttatacttggtaggttagtggaggtttataggtcttctaatttgaagggtttt 600  Q
    || |||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||| ||| |||||    
T  31528962 agcagttccaaatattcgcaaaacggcatatgggattttcaccacgtttatacttggcaggttaatggaggtttataggtcttctaatttaaagagtttt 31528863  T
Q  601 caaacttgtcttatattgtccgatt 625  Q
    |||||||||||||||||||| ||||    
T  31528862 caaacttgtcttatattgtctgatt 31528838  T

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