View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11721_low_15 (Length: 643)
Name: NF11721_low_15
Description: NF11721
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11721_low_15 |
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| [»] scaffold0393 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 605; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 605; E-Value: 0
Query Start/End: Original strand, 18 - 634
Target Start/End: Complemental strand, 2411830 - 2411214
Alignment:
| Q |
18 |
atgtcctatatggtaggttatggtccatattttcccaagagaattcaccacagaggatcttcattgccttcactatcagttcatccacagacaataggat |
117 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2411830 |
atgtcctatatggtaggttatggtccatattttcccaagagaattcaccacagaggatcttcattgccttcactatcagttcatccacagacaataggat |
2411731 |
T |
|
| Q |
118 |
gtgatggaggtttcaatccgtttttccattcaatgaatcagaaccctaatatattggttggagccatagttggaggtccaaaccaaaacgatggatttcc |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2411730 |
gtgatggaggtttcaatccgtttttccattcaatgaatcagaaccctaatatattggttggagccatagttggaggtccaaaccaaaacgatggatttcc |
2411631 |
T |
|
| Q |
218 |
ggatgaccgtggtgattatagtcattcagaaccagcaacttacatcaatggtgggattgttggacctttagcgtactttgctggtaacaattaatgttag |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2411630 |
ggatgaccgtggtgattatagtcattcagaaccagcaacttacatcaatggtgggattgttggacctttagcgtactttgctggtaacaattaatgttag |
2411531 |
T |
|
| Q |
318 |
atttgactttgatagcaaggttaaaaacagaacactgctatcaaagtgtagatactatctcatctctacccaacaaagggatgtctaccaaatcaaaaac |
417 |
Q |
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|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2411530 |
atttgactttgatagcaaggttaaaaacagaaatctgctatcaaagtgtagatactatctcatctctacccaacaaagggatgtctaccaaatcaaaaac |
2411431 |
T |
|
| Q |
418 |
agatggtggtggactatgaagggagcagtgttctttttcagtctttgatacaaaaaatatatagcttttagtaatcttaaatgtaatccaacatctttac |
517 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2411430 |
agatggtggtggactatgaagggagcagtgttctttttcagtctttgatacaaaaaatatatagcttttagtaatcttaaatgtaatccaacatctttac |
2411331 |
T |
|
| Q |
518 |
tatgttttacactacatggtgtatcatagcacccaaaaaacttatgtaatcacttattaaaatgaaatagcttcatccatcttcgcattcgtctttattc |
617 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
2411330 |
tatgttttacactacatggtgtatcatagcacccaaaaaacttatgtaatcacttattaaaatgaaatagcttcatccatctttgcattcgtctttattc |
2411231 |
T |
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| Q |
618 |
tttttctttgttcatct |
634 |
Q |
| |
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||||||||||||||||| |
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| T |
2411230 |
tttttctttgttcatct |
2411214 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0393 (Bit Score: 401; Significance: 0; HSPs: 1)
Name: scaffold0393
Description:
Target: scaffold0393; HSP #1
Raw Score: 401; E-Value: 0
Query Start/End: Original strand, 18 - 606
Target Start/End: Complemental strand, 14215 - 13623
Alignment:
| Q |
18 |
atgtcctatatggtaggttatggtccatattttcccaagagaattcaccacagaggatcttcattgccttcactatcagttcatccacagacaataggat |
117 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
14215 |
atgtcctatatggtaggttatggtccatattttcccaagagaattcaccacagaggatcttcattgccttcactatcagttcatccgcagacaataggat |
14116 |
T |
|
| Q |
118 |
gtgatggaggtttcaatccgtttttccattcaatgaatcagaaccctaatatattggttggagccatagttggaggtccaaaccaaaacgatggatttcc |
217 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||| |
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| T |
14115 |
gtgatggaggtttcaatccgtttttccattcaatgaatcagaaccctaatatattggttggagccatagttggaggtccaaaccagaacgacggatttcc |
14016 |
T |
|
| Q |
218 |
ggatgaccgtggtgattata----gtcattcagaaccagcaacttacatcaatggtgggattgttggacctttagcgtac-tttgctggtaacaattaat |
312 |
Q |
| |
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|||||| || |||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||| |||||||| |
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| T |
14015 |
ggatgatcgcggtgattatagtcagtcattgagaaccagcaacttacatcaatggtgggattgttggacctttagcgtacttttgccggtagcaattaat |
13916 |
T |
|
| Q |
313 |
gttaga-tttgactttgatagcaaggtt-aaaaacagaacactgctatcaaagtgtagatactatctcatctctacccaacaaagggatgtctacc-aaa |
409 |
Q |
| |
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|||||| ||||||||||||||||||||| |||||||||||||||||||| ||||||||||| | |||||||||||||||||||||||||||||||| ||| |
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| T |
13915 |
gttagattttgactttgatagcaaggttaaaaaacagaacactgctatcgaagtgtagatattgtctcatctctacccaacaaagggatgtctaccaaaa |
13816 |
T |
|
| Q |
410 |
tc-aaaaacagatggtggtggactatgaagggagcagtgttctttttcagtctttgatacaaaaaatatatagcttttagtaatcttaaatgtaatccaa |
508 |
Q |
| |
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|| |||||||||||||||| |||||||||||||| |||||| ||||| || | || ||||||||||||||||||||||||||||||||||||| |
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| T |
13815 |
tcaaaaaacagatggtggtagactatgaagggagaagtgtttttttt---tcagtaat--cttaaatatatagcttttagtaatcttaaatgtaatccaa |
13721 |
T |
|
| Q |
509 |
catctttactatgttttacactacatggtgtatcatagcacccaaaaaact-tatgtaatcacttattaaaatgaaatagcttcatccatcttcgcatt |
606 |
Q |
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||||||||| ||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||| | ||||||||||||| ||||| |
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| T |
13720 |
catctttacgatgttttacactacatggtgtatcata-cacccaaaaaactaaatgtaatcacttattaaaatgaaacaacttcatccatctttgcatt |
13623 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 61; Significance: 7e-26; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 61; E-Value: 7e-26
Query Start/End: Original strand, 496 - 634
Target Start/End: Complemental strand, 30599081 - 30598939
Alignment:
| Q |
496 |
aaatgtaatccaacatctttactatgtttt-acactacatggtg---tatcatagcacccaaaaaacttatgtaatcacttattaaaatgaaatagcttc |
591 |
Q |
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|||||||||||||||||||||||||||||| || | ||||||| |||||| || |||||||||||||||||||||||||||||||||||| ||||| |
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| T |
30599081 |
aaatgtaatccaacatctttactatgtttttactttgcatggtggtgtatcattgcgcccaaaaaacttatgtaatcacttattaaaatgaaacagcttt |
30598982 |
T |
|
| Q |
592 |
atccatcttcgcattcgtctttattctttttctttgttcatct |
634 |
Q |
| |
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||||||| | | ||| ||||| ||| |||| ||||||||||| |
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| T |
30598981 |
atccatcattgtatttttcttttttccttttatttgttcatct |
30598939 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 432 - 468
Target Start/End: Complemental strand, 30599120 - 30599084
Alignment:
| Q |
432 |
tatgaagggagcagtgttctttttcagtctttgatac |
468 |
Q |
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||||||||||||||||||| ||||||||||||||||| |
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| T |
30599120 |
tatgaagggagcagtgttcattttcagtctttgatac |
30599084 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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