View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11721_low_16 (Length: 642)

Name: NF11721_low_16
Description: NF11721
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11721_low_16
NF11721_low_16
[»] chr3 (37 HSPs)
chr3 (98-620)||(3414315-3414838)
chr3 (98-620)||(3385634-3386161)
chr3 (184-253)||(14166745-14166814)
chr3 (110-257)||(9711269-9711416)
chr3 (261-368)||(4557246-4557354)
chr3 (261-342)||(4015985-4016066)
chr3 (261-342)||(6738346-6738427)
chr3 (267-420)||(52572592-52572750)
chr3 (261-370)||(29284373-29284483)
chr3 (261-342)||(48305582-48305663)
chr3 (267-370)||(22535788-22535892)
chr3 (270-342)||(42243453-42243525)
chr3 (181-260)||(18540175-18540254)
chr3 (409-484)||(30904909-30904984)
chr3 (168-257)||(3585243-3585333)
chr3 (261-370)||(7469719-7469829)
chr3 (409-551)||(27252420-27252561)
chr3 (269-419)||(44953384-44953539)
chr3 (261-370)||(54317181-54317291)
chr3 (264-343)||(34119721-34119800)
chr3 (409-476)||(37032192-37032259)
chr3 (261-340)||(39655214-39655293)
chr3 (269-420)||(53631887-53632043)
chr3 (269-370)||(48390766-48390868)
chr3 (267-368)||(49580103-49580205)
chr3 (261-342)||(34026020-34026101)
chr3 (302-342)||(2490371-2490411)
chr3 (279-370)||(23580864-23580956)
chr3 (209-259)||(33441389-33441439)
chr3 (261-342)||(4553256-4553337)
chr3 (269-330)||(10371222-10371283)
chr3 (409-478)||(27937664-27937733)
chr3 (302-342)||(19111800-19111840)
chr3 (270-326)||(23546898-23546954)
chr3 (268-316)||(31271247-31271295)
chr3 (261-321)||(44106735-44106794)
chr3 (268-340)||(44252815-44252887)
[»] chr8 (38 HSPs)
chr8 (382-550)||(8545416-8545584)
chr8 (180-259)||(4861236-4861315)
chr8 (382-551)||(28345343-28345512)
chr8 (374-557)||(36274889-36275071)
chr8 (429-551)||(5700208-5700330)
chr8 (180-259)||(17288831-17288911)
chr8 (268-470)||(27777146-27777354)
chr8 (268-370)||(29108770-29108873)
chr8 (372-551)||(29918459-29918638)
chr8 (268-370)||(39445524-39445627)
chr8 (261-370)||(5858593-5858703)
chr8 (409-551)||(6388599-6388741)
chr8 (261-370)||(27932450-27932560)
chr8 (99-248)||(1216414-1216561)
chr8 (269-370)||(20399629-20399731)
chr8 (261-370)||(32303098-32303208)
chr8 (409-486)||(30903963-30904040)
chr8 (261-342)||(43113567-43113648)
chr8 (270-342)||(14155598-14155670)
chr8 (261-333)||(24928024-24928096)
chr8 (290-342)||(27056525-27056577)
chr8 (261-340)||(4230671-4230750)
chr8 (261-367)||(37960903-37961010)
chr8 (261-404)||(1012618-1012765)
chr8 (384-490)||(9476082-9476188)
chr8 (261-335)||(29416128-29416202)
chr8 (261-342)||(15173821-15173902)
chr8 (261-314)||(17084054-17084107)
chr8 (262-362)||(32392328-32392429)
chr8 (270-342)||(40248321-40248393)
chr8 (261-340)||(2075775-2075854)
chr8 (261-316)||(17469335-17469390)
chr8 (291-342)||(29918673-29918724)
chr8 (140-259)||(42144657-42144775)
chr8 (261-370)||(15068529-15068639)
chr8 (268-326)||(34777142-34777200)
chr8 (390-551)||(5793437-5793598)
chr8 (390-474)||(39379654-39379737)
[»] chr6 (34 HSPs)
chr6 (372-550)||(1947848-1948026)
chr6 (382-550)||(9402442-9402610)
chr6 (154-260)||(22461226-22461334)
chr6 (190-259)||(32184556-32184625)
chr6 (268-419)||(27534668-27534824)
chr6 (267-370)||(5863330-5863434)
chr6 (261-370)||(30986290-30986400)
chr6 (440-550)||(34346139-34346249)
chr6 (271-340)||(31496502-31496571)
chr6 (271-340)||(31501888-31501957)
chr6 (267-370)||(9442467-9442570)
chr6 (268-420)||(32853827-32853984)
chr6 (261-340)||(10188021-10188100)
chr6 (461-551)||(2126767-2126857)
chr6 (269-370)||(10142467-10142569)
chr6 (409-551)||(14321721-14321861)
chr6 (99-260)||(19770832-19770992)
chr6 (261-340)||(3483864-3483943)
chr6 (261-342)||(12678035-12678116)
chr6 (267-367)||(27738812-27738913)
chr6 (269-426)||(29341233-29341395)
chr6 (455-551)||(8320935-8321031)
chr6 (261-333)||(12141460-12141532)
chr6 (261-333)||(14255032-14255104)
chr6 (268-370)||(2367363-2367466)
chr6 (268-359)||(30816308-30816398)
chr6 (300-342)||(5108911-5108953)
chr6 (260-373)||(9458697-9458811)
chr6 (272-326)||(32053164-32053218)
chr6 (265-342)||(256437-256514)
chr6 (455-551)||(20348917-20349011)
chr6 (298-343)||(30624480-30624525)
chr6 (175-259)||(19566032-19566116)
chr6 (199-231)||(32184782-32184814)
[»] chr4 (50 HSPs)
chr4 (409-551)||(33616210-33616352)
chr4 (180-259)||(15709929-15710008)
chr4 (180-258)||(15702781-15702859)
chr4 (261-551)||(21956756-21957050)
chr4 (268-478)||(36919054-36919269)
chr4 (180-260)||(25128081-25128161)
chr4 (261-342)||(1724212-1724292)
chr4 (261-342)||(37349184-37349265)
chr4 (268-551)||(8843754-8844041)
chr4 (268-551)||(8856718-8857005)
chr4 (389-551)||(42907745-42907906)
chr4 (393-474)||(36306720-36306801)
chr4 (412-551)||(9929265-9929404)
chr4 (161-259)||(13885917-13886015)
chr4 (409-551)||(17113098-17113239)
chr4 (429-491)||(53906794-53906856)
chr4 (261-326)||(5902562-5902627)
chr4 (409-557)||(33516167-33516316)
chr4 (259-343)||(19882996-19883080)
chr4 (382-550)||(25298901-25299068)
chr4 (455-550)||(7334324-7334419)
chr4 (416-551)||(30034532-30034667)
chr4 (261-370)||(6382214-6382324)
chr4 (261-370)||(7609013-7609123)
chr4 (261-370)||(11028116-11028226)
chr4 (261-370)||(15987204-15987314)
chr4 (99-259)||(11149661-11149821)
chr4 (274-551)||(12075587-12075868)
chr4 (261-478)||(25941069-25941291)
chr4 (267-326)||(50375868-50375927)
chr4 (261-419)||(11122811-11122974)
chr4 (181-259)||(18874211-18874288)
chr4 (298-371)||(43309525-43309599)
chr4 (261-427)||(47550295-47550466)
chr4 (267-340)||(31918506-31918579)
chr4 (261-373)||(33615271-33615384)
chr4 (409-470)||(40420680-40420741)
chr4 (261-370)||(26564874-26564984)
chr4 (267-370)||(44317578-44317682)
chr4 (270-349)||(7334148-7334226)
chr4 (460-551)||(25265292-25265383)
chr4 (461-551)||(37926419-37926507)
chr4 (261-324)||(43893317-43893380)
chr4 (261-322)||(19548880-19548940)
chr4 (409-474)||(21714070-21714135)
chr4 (417-478)||(37384204-37384265)
chr4 (261-342)||(42299860-42299941)
chr4 (267-316)||(53906286-53906335)
chr4 (261-333)||(21423942-21424014)
chr4 (412-484)||(39086081-39086152)
[»] chr7 (43 HSPs)
chr7 (414-551)||(11472811-11472948)
chr7 (180-259)||(11510535-11510614)
chr7 (261-551)||(3156940-3157234)
chr7 (409-550)||(31345384-31345525)
chr7 (261-370)||(35074512-35074622)
chr7 (260-333)||(37218085-37218158)
chr7 (261-340)||(16866242-16866321)
chr7 (261-370)||(10072508-10072618)
chr7 (384-489)||(23475332-23475438)
chr7 (261-342)||(37579332-37579413)
chr7 (267-370)||(17885507-17885611)
chr7 (267-370)||(39317037-39317141)
chr7 (261-340)||(7780081-7780160)
chr7 (409-549)||(29292551-29292701)
chr7 (168-262)||(34705007-34705102)
chr7 (267-342)||(44658414-44658489)
chr7 (268-370)||(45380149-45380251)
chr7 (261-370)||(30650673-30650783)
chr7 (384-491)||(23533672-23533781)
chr7 (261-342)||(38152958-38153038)
chr7 (455-551)||(6557866-6557962)
chr7 (384-491)||(19440079-19440187)
chr7 (260-316)||(23475215-23475271)
chr7 (261-370)||(39455956-39456066)
chr7 (261-370)||(21702701-21702811)
chr7 (261-366)||(38139733-38139839)
chr7 (270-366)||(12980423-12980520)
chr7 (261-369)||(17851897-17852004)
chr7 (267-370)||(18125175-18125279)
chr7 (261-321)||(37182366-37182426)
chr7 (261-316)||(3920623-3920678)
chr7 (269-316)||(23457156-23457203)
chr7 (261-316)||(23533557-23533612)
chr7 (269-340)||(45885714-45885785)
chr7 (260-342)||(2630514-2630596)
chr7 (99-260)||(18149442-18149603)
chr7 (269-315)||(19439971-19440017)
chr7 (424-550)||(43550525-43550650)
chr7 (272-333)||(4101622-4101683)
chr7 (261-326)||(27850273-27850338)
chr7 (268-316)||(18825814-18825862)
chr7 (269-333)||(25905708-25905772)
chr7 (503-551)||(37217861-37217909)
[»] chr5 (31 HSPs)
chr5 (264-551)||(38972774-38973066)
chr5 (268-551)||(40187606-40187893)
chr5 (382-550)||(7350475-7350643)
chr5 (372-551)||(17153021-17153200)
chr5 (261-370)||(13401946-13402056)
chr5 (261-511)||(16311235-16311489)
chr5 (261-370)||(20973438-20973548)
chr5 (261-370)||(4583156-4583266)
chr5 (261-370)||(4920863-4920973)
chr5 (261-342)||(29245893-29245974)
chr5 (308-478)||(27900390-27900565)
chr5 (390-549)||(18451961-18452120)
chr5 (268-370)||(30996633-30996735)
chr5 (374-491)||(8020527-8020644)
chr5 (261-342)||(24207750-24207830)
chr5 (267-370)||(5908636-5908740)
chr5 (390-478)||(12457442-12457530)
chr5 (261-340)||(6092471-6092550)
chr5 (409-551)||(457467-457605)
chr5 (267-340)||(10127142-10127215)
chr5 (268-333)||(12834523-12834588)
chr5 (261-367)||(18207058-18207165)
chr5 (390-551)||(29664823-29664984)
chr5 (261-340)||(40517874-40517953)
chr5 (268-342)||(12866500-12866574)
chr5 (261-370)||(15890243-15890353)
chr5 (261-370)||(33727943-33728053)
chr5 (409-551)||(35583969-35584110)
chr5 (297-342)||(12915539-12915584)
chr5 (374-478)||(6810083-6810187)
chr5 (268-324)||(42717579-42717635)
[»] scaffold0244 (1 HSPs)
scaffold0244 (409-551)||(4674-4816)
[»] chr2 (38 HSPs)
chr2 (143-259)||(22384859-22384975)
chr2 (98-193)||(32873121-32873216)
chr2 (428-551)||(35248494-35248617)
chr2 (99-259)||(34891586-34891744)
chr2 (267-370)||(7314595-7314699)
chr2 (409-550)||(29656829-29656971)
chr2 (180-259)||(16933679-16933756)
chr2 (390-551)||(34544386-34544547)
chr2 (183-262)||(24852267-24852346)
chr2 (409-551)||(30696777-30696919)
chr2 (261-370)||(30846984-30847094)
chr2 (261-370)||(37106730-37106840)
chr2 (261-370)||(37472700-37472810)
chr2 (383-551)||(35965187-35965356)
chr2 (261-327)||(31942126-31942192)
chr2 (261-340)||(9632455-9632534)
chr2 (181-259)||(16939052-16939133)
chr2 (181-259)||(17009717-17009798)
chr2 (320-483)||(25210298-25210466)
chr2 (440-491)||(40734708-40734759)
chr2 (268-342)||(12341667-12341741)
chr2 (372-478)||(13531875-13531981)
chr2 (261-342)||(12193768-12193849)
chr2 (271-367)||(13954787-13954883)
chr2 (271-367)||(14095994-14096090)
chr2 (154-259)||(24534183-24534287)
chr2 (261-360)||(10920686-10920786)
chr2 (261-333)||(13830811-13830883)
chr2 (302-373)||(38342501-38342573)
chr2 (302-373)||(43371588-43371660)
chr2 (261-324)||(24414073-24414136)
chr2 (460-551)||(34214801-34214892)
chr2 (389-477)||(13954672-13954760)
chr2 (389-477)||(14095879-14095967)
chr2 (267-366)||(10208378-10208477)
chr2 (261-340)||(18106059-18106139)
chr2 (271-335)||(37309695-37309759)
chr2 (268-324)||(45115645-45115701)
[»] chr1 (39 HSPs)
chr1 (290-551)||(41476922-41477188)
chr1 (261-427)||(19572453-19572624)
chr1 (321-551)||(39219111-39219346)
chr1 (180-259)||(41138886-41138965)
chr1 (409-551)||(13692497-13692640)
chr1 (261-427)||(24236702-24236873)
chr1 (261-370)||(36187161-36187271)
chr1 (279-371)||(10778526-10778619)
chr1 (99-259)||(12784418-12784577)
chr1 (264-370)||(24710885-24710992)
chr1 (302-470)||(33293513-33293675)
chr1 (261-367)||(44615416-44615523)
chr1 (261-367)||(44793046-44793153)
chr1 (261-370)||(5181077-5181187)
chr1 (449-551)||(25154961-25155063)
chr1 (374-547)||(36421623-36421796)
chr1 (409-551)||(42729038-42729180)
chr1 (183-260)||(29447643-29447720)
chr1 (267-340)||(49250720-49250793)
chr1 (261-370)||(18354021-18354131)
chr1 (298-426)||(34085213-34085346)
chr1 (261-340)||(51421927-51422006)
chr1 (424-550)||(8880302-8880428)
chr1 (268-342)||(13020660-13020734)
chr1 (261-370)||(23490712-23490822)
chr1 (261-342)||(12495077-12495158)
chr1 (261-342)||(13390464-13390544)
chr1 (186-223)||(20932245-20932282)
chr1 (270-342)||(13798305-13798377)
chr1 (261-325)||(20774650-20774714)
chr1 (175-259)||(52271991-52272075)
chr1 (269-367)||(16408983-16409082)
chr1 (183-214)||(20932284-20932315)
chr1 (382-473)||(48125750-48125841)
chr1 (180-260)||(23634134-23634218)
chr1 (390-551)||(25181056-25181218)
chr1 (261-370)||(34673223-34673333)
chr1 (261-342)||(39616359-39616440)
chr1 (379-483)||(23719524-23719627)
[»] scaffold0498 (1 HSPs)
scaffold0498 (180-259)||(5099-5178)
[»] scaffold0103 (1 HSPs)
scaffold0103 (180-259)||(16520-16597)
[»] scaffold1322 (1 HSPs)
scaffold1322 (409-551)||(964-1105)
[»] scaffold0014 (1 HSPs)
scaffold0014 (261-342)||(14125-14206)
[»] scaffold0022 (1 HSPs)
scaffold0022 (261-326)||(90673-90738)
[»] scaffold0024 (2 HSPs)
scaffold0024 (161-232)||(108427-108498)
scaffold0024 (161-259)||(106031-106129)
[»] scaffold0008 (2 HSPs)
scaffold0008 (261-343)||(67814-67896)
scaffold0008 (261-343)||(75657-75739)
[»] scaffold0048 (1 HSPs)
scaffold0048 (152-197)||(69839-69884)
[»] scaffold0002 (1 HSPs)
scaffold0002 (298-343)||(449767-449812)


Alignment Details
Target: chr3 (Bit Score: 464; Significance: 0; HSPs: 37)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 464; E-Value: 0
Query Start/End: Original strand, 98 - 620
Target Start/End: Original strand, 3414315 - 3414838
Alignment:
Q  98 gatgtgaaaagttactttgatgttttgagaacttttcgacaacgacgtttttaatattaaacgaagtactttttgaatgattaagatgtgtgacaccctt 197  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3414315 gatgtgaaaagttactttgatgttttgagaacttttcgacagcgacgtttttaatattaaacgaagtactttttgaatgattaagatgtgtgacaccctt 3414414  T
Q  198 gcatgtttaattaattattgtattttaattagaaactaataagtggggtttagggtgttacaatacccacccgaaccaaactcaattcgacaggttttgc 297  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||| |    
T  3414415 gcatgtttaattaattattgtattttaattagaaaataataagtggggtttagggtgttacaatacccacccgaaccaaacccaattcgataggttttcc 3414514  T
Q  298 ccgctttgactgggtttggttatgggtttgagtttttcccgattttcaaa-acgagtatgggacaggtaacggggatgtactcatcccgaatccatactc 396  Q
    ||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||    
T  3414515 ccgctttgattgggtttggttatgggtttgagtttttcccgattttcaaacacgagtacgggacaggtaacggggatgtactcatcccgaatccatactc 3414614  T
Q  397 aaactcgtacctaatgtagaaaatcattttaataccccttttctataaataaaaatcgaaaccctaaatcatttcactcacatagtcaaagtctcgttca 496  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     
T  3414615 aaacccgtacctaatgtagaaaatcattttaataccccttttctataaataaaaatcgaaaccctaaatcatttcactcacatagtcaaagtctcgttct 3414714  T
Q  497 tttagttgacactctcttatcaaagttctcttttatctccttccatatctcacacgctaggcgccctagagctaatgaactaaagttcttgccgcatgcc 596  Q
    |||||||||||||||||| |||||||||| | |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  3414715 tttagttgacactctcttctcaaagttctatcttatctccttccatatctcacacgctaggcgccccagagctaatgaactaaagttcttgccgcatgcc 3414814  T
Q  597 acggggcgctaggcgcctcagcct 620  Q
    ||||||||||||||||||||||||    
T  3414815 acggggcgctaggcgcctcagcct 3414838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 275; E-Value: 1e-153
Query Start/End: Original strand, 98 - 620
Target Start/End: Original strand, 3385634 - 3386161
Alignment:
Q  98 gatgtgaaaagttactttgatgttttgagaacttttcgacaacgacgtttttaatattaaacgaagtactttttgaatgattaagatgtgtgacaccctt 197  Q
    |||||||||| |||||||||||||||||||| ||||||||  ||||||||||||||||||  |||||||||||||||| ||||| ||| |||| | | ||    
T  3385634 gatgtgaaaaattactttgatgttttgagaaattttcgactgcgacgtttttaatattaattgaagtactttttgaataattaatatgagtgatagcttt 3385733  T
Q  198 gcatgtttaattaattattgtattttaattagaaactaataagtggggtttagggtgttacaatacccacccgaaccaaactcaattcgacaggttttgc 297  Q
    |||||||||||||||||||||| |||||||||||| |||||||||||||||||| ||||| | || || |||||||||||| ||||||||| |||||| |    
T  3385734 gcatgtttaattaattattgtactttaattagaaaataataagtggggtttaggatgttatagtatccgcccgaaccaaacccaattcgacgggttttcc 3385833  T
Q  298 ccgctttgactgggtttggttatgggtttgagtttttcccgattttcaaa-acgagtatgggacaggtaacggggat----gtactcatcccgaatccat 392  Q
    ||||||||||||||||| | ||||| ||||| ||||| || ||||  ||| ||| ||| ||||||||||||| ||||    |||  || | |||||||||    
T  3385834 ccgctttgactgggtttaggtatggatttgaatttttacccatttcaaaacacgggtacgggacaggtaacgaggatataggtagccaccacgaatccat 3385933  T
Q  393 actcaaactcgtacctaatgtagaaaatcattttaataccccttttctataaataaaaatcgaaaccctaaatcatttcactcacatagtcaaagtctcg 492  Q
    ||  |||| ||||||||||||| |||||||||||| || |||||||||||||||||||||||||| |||||||||||||||| ||||||| |||||||||    
T  3385934 accaaaacccgtacctaatgtaaaaaatcattttagtaacccttttctataaataaaaatcgaaatcctaaatcatttcacttacatagttaaagtctcg 3386033  T
Q  493 ttcatttagttgacactctcttatcaaagttctcttttatctccttccatatctcacacgctaggcgccctagagctaatgaactaaagttcttgccgca 592  Q
     || ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| | ||||||||||||||||| | | | |||    
T  3386034 gtcttttagttgacactctcttatcaaagttctctcttatctccttccatatctcacacgctaggcgccccaaagctaatgaactaaagtgccttcggca 3386133  T
Q  593 tgccacggggcgctaggcgcctcagcct 620  Q
    || |||||||||||||||| ||||||||    
T  3386134 tgtcacggggcgctaggcgactcagcct 3386161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 184 - 253
Target Start/End: Original strand, 14166745 - 14166814
Alignment:
Q  184 tgtgtgacacccttgcatgtttaattaattattgtattttaattagaaactaataagtggggtttagggt 253  Q
    |||||||||| ||||||||||||||||||||||||||||| |||||||| ||||| ||| ||||||||||    
T  14166745 tgtgtgacactcttgcatgtttaattaattattgtatttttattagaaaataatatgtgaggtttagggt 14166814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 110 - 257
Target Start/End: Complemental strand, 9711416 - 9711269
Alignment:
Q  110 tactttgatgttttgagaacttttcgacaacgacgtttttaatattaaacgaagtactttttgaatgattaagatgtgtgacacccttgcatgtttaatt 209  Q
    |||||||||||||||| |||| ||  ||  ||||||||||||  || || |||||||||||  | ||||  ||||| | |||| ||||||||| ||||||    
T  9711416 tactttgatgttttgaaaactattttactgcgacgtttttaaatttgaatgaagtacttttaaattgatggagatgggagacatccttgcatgcttaatt 9711317  T
Q  210 aattattgtattttaattagaaactaataagtggggtttagggtgtta 257  Q
    |||||| |||||||||||| ||| |||||  ||||||||||| |||||    
T  9711316 aattatcgtattttaattataaaataatatatggggtttaggttgtta 9711269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 261 - 368
Target Start/End: Original strand, 4557246 - 4557354
Alignment:
Q  261 tacccacccgaaccaaactcaattcgacaggttttgcccgctttgactgggtttggttatgggtttgagtttttcccgattttcaaaac--gagtatggg 358  Q
    ||||||||||||| |||| ||||| ||| |||||| |||| ||||||||||||||| |||||||||| ||||| |||| ||||||||||  | |||||||    
T  4557246 tacccacccgaacaaaacccaatttgacgggtttttcccgttttgactgggtttgggtatgggtttgggttttccccg-ttttcaaaacatgggtatggg 4557344  T
Q  359 acaggtaacg 368  Q
    || |||||||    
T  4557345 acgggtaacg 4557354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 261 - 342
Target Start/End: Original strand, 4015985 - 4016066
Alignment:
Q  261 tacccacccgaaccaaactcaattcgacaggttttgcccgctttgactgggtttggttatgggtttgagtttttcccgattt 342  Q
    ||||||||||||| |||||||||| ||| |||||| |||| ||||||| ||||||| |||||||||| ||||| ||||||||    
T  4015985 tacccacccgaacgaaactcaatttgacgggtttttcccgttttgactaggtttgggtatgggtttgggttttccccgattt 4016066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 261 - 342
Target Start/End: Original strand, 6738346 - 6738427
Alignment:
Q  261 tacccacccgaaccaaactcaattcgacaggttttgcccgctttgactgggtttggttatgggtttgagtttttcccgattt 342  Q
    ||||| |||||||||||| ||||| |||||||||| |||| ||||||||||||||| ||||||| || ||||| ||||||||    
T  6738346 tacccgcccgaaccaaacccaatttgacaggtttttcccgttttgactgggtttgggtatgggtatgggttttccccgattt 6738427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 267 - 420
Target Start/End: Complemental strand, 52572750 - 52572592
Alignment:
Q  267 cccgaaccaaactcaattcgacaggttttgcccgctttgactgggtttggttatgggtttgagtttttcccgattttcaaa-acgagtatgggacaggta 365  Q
    |||||||||||||||||| |||||||||| |||  ||||||||||||||| ||||||| |||||||| | |||| |  ||| ||| ||||||||| ||||    
T  52572750 cccgaaccaaactcaatttgacaggttttccccattttgactgggtttgggtatgggtatgagttttcctcgatctcaaaacacgggtatgggacgggta 52572651  T
Q  366 acggggat----gtactcatcccgaatccatactcaaactcgtacctaatgtagaaaat 420  Q
    ||||| ||    | || || ||||||||||||||||| | ||| || |||||| |||||    
T  52572650 acgggtatatagggacccaccccgaatccatactcaagcccgtcccaaatgtaaaaaat 52572592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 261 - 370
Target Start/End: Complemental strand, 29284483 - 29284373
Alignment:
Q  261 tacccacccgaaccaaactcaattcgacaggttttgcccgctttgactgggtttggttatgggtttgagtttttcccgattttcaaa-acgagtatggga 359  Q
    ||||| |||||||||||| ||||| ||| ||||||  ||| ||||||||||||||| ||||||| || |||||||||||| |  ||| ||| ||||||||    
T  29284483 tacccgcccgaaccaaacccaatttgacgggttttctccgttttgactgggtttgggtatgggtatgggtttttcccgatctcgaaacacgggtatggga 29284384  T
Q  360 caggtaacggg 370  Q
    | |||||||||    
T  29284383 cgggtaacggg 29284373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 261 - 342
Target Start/End: Original strand, 48305582 - 48305663
Alignment:
Q  261 tacccacccgaaccaaactcaattcgacaggttttgcccgctttgactgggtttggttatgggtttgagtttttcccgattt 342  Q
    |||||||||||||||||| ||||  ||| |||||| |||  ||||||||||||||||||||||| |||||||| ||| ||||    
T  48305582 tacccacccgaaccaaacccaatctgacgggttttccccattttgactgggtttggttatgggtatgagttttccccaattt 48305663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 267 - 370
Target Start/End: Original strand, 22535788 - 22535892
Alignment:
Q  267 cccgaaccaaactcaattcgacaggttttgcccgctttgactgggtttggttatgggtttgagtttttcccgattttcaaa-acgagtatgggacaggta 365  Q
    |||||||||||||||||| ||  |||||| |||| ||||||||||||||| ||||||| |||||||| ||| ||||  ||| |||  |||||||| ||||    
T  22535788 cccgaaccaaactcaatttgatgggttttccccgttttgactgggtttgggtatgggtatgagttttccccaatttcaaaacacggatatgggacgggta 22535887  T
Q  366 acggg 370  Q
    |||||    
T  22535888 acggg 22535892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 270 - 342
Target Start/End: Complemental strand, 42243525 - 42243453
Alignment:
Q  270 gaaccaaactcaattcgacaggttttgcccgctttgactgggtttggttatgggtttgagtttttcccgattt 342  Q
    ||||||||| ||||| ||| |||||| |||| ||||||||||||||| |||| ||||| ||||||||||||||    
T  42243525 gaaccaaacccaatttgacgggttttccccggtttgactgggtttgggtatgagtttgggtttttcccgattt 42243453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 181 - 260
Target Start/End: Original strand, 18540175 - 18540254
Alignment:
Q  181 agatgtgtgacacccttgcatgtttaattaattattgtattttaattagaaactaataagtggggtttagggtgttacaa 260  Q
    ||||||||||||||||||| || || | || ||||| |||||| |||||||| ||||| |||||||||||| ||||||||    
T  18540175 agatgtgtgacacccttgcgtgatttaatatttattatatttttattagaaaataatatgtggggtttaggatgttacaa 18540254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 409 - 484
Target Start/End: Original strand, 30904909 - 30904984
Alignment:
Q  409 aatgtagaaaatcattttaataccccttttctataaataaaaatcgaaaccctaaatcatttcactcacatagtca 484  Q
    ||||||| |||||| |||| |||||||||| |||||||| ||| | ||||||| |||||||||||||| |||||||    
T  30904909 aatgtaggaaatcaatttactaccccttttatataaatagaaacccaaacccttaatcatttcactcatatagtca 30904984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 168 - 257
Target Start/End: Complemental strand, 3585333 - 3585243
Alignment:
Q  168 ttttgaatg-attaagatgtgtgacacccttgcatgtttaattaattattgtattttaattagaaactaataagtggggtttagggtgtta 257  Q
    ||||||||| || ||||||||||||||||||| ||| |  | |||||||| |||||| |||||||| | ||| ||||||||||||||||||    
T  3585333 ttttgaatggatgaagatgtgtgacacccttgtatgctataataattattatatttttattagaaaatgatatgtggggtttagggtgtta 3585243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 261 - 370
Target Start/End: Original strand, 7469719 - 7469829
Alignment:
Q  261 tacccacccgaaccaaactcaattcgacaggttttgcccgctttgactgggtttggttatgggtttgagtttttcccgattttcaaa-acgagtatggga 359  Q
    ||||| |||||||||||| ||||| ||| |||||| |||| ||||||||||||||| ||||||| || ||||| || ||| |  ||| ||| ||||||||    
T  7469719 tacccgcccgaaccaaacccaatttgacgggttttccccgttttgactgggtttgggtatgggtatgggttttccctgatctcgaaacacgggtatggga 7469818  T
Q  360 caggtaacggg 370  Q
    | |||||||||    
T  7469819 cgggtaacggg 7469829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 409 - 551
Target Start/End: Complemental strand, 27252561 - 27252420
Alignment:
Q  409 aatgtagaaaatcattttaataccccttttctataaataaaaatcgaaaccctaaatcatttcactcacatagtcaaagtctcgttcatttagttgacac 508  Q
    |||||||||  ||| |||| ||||| |||| |||||||| ||| | ||| | |||||||||||||||||| ||| | ||| ||  || || || ||||||    
T  27252561 aatgtagaatttcaatttattacccattttatataaatagaaaccaaaatcataaatcatttcactcacacagttagagtatcagtctttcagatgacac 27252462  T
Q  509 tctcttatcaaagttctcttttatctccttccatatctcacac 551  Q
    || ||||||  |||||||| || ||||||||||||||||||||    
T  27252461 tcacttatcttagttctctctt-tctccttccatatctcacac 27252420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 269 - 419
Target Start/End: Original strand, 44953384 - 44953539
Alignment:
Q  269 cgaaccaaactcaattcgacaggttttgcccgctttgactgggtttggttatgggtttgagtttttcccgattttcaaa-acgagtatgggacaggtaac 367  Q
    |||||||||| ||||| ||| |||||| |||| ||||||||||||||| | ||||| || ||||| |||||| |  ||| ||| ||||||||| ||||||    
T  44953384 cgaaccaaacccaatttgacgggttttccccgttttgactgggtttgggtttgggtatgggttttccccgatctcaaaacacgggtatgggacgggtaac 44953483  T
Q  368 ggggat----gtactcatcccgaatccatactcaaactcgtacctaatgtagaaaa 419  Q
    ||| ||    ||||||| ||||||  ||||||||||| ||| || |||||| ||||    
T  44953484 gggtatataggtactcaccccgaactcatactcaaacccgtcccaaatgtaaaaaa 44953539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 261 - 370
Target Start/End: Complemental strand, 54317291 - 54317181
Alignment:
Q  261 tacccacccgaaccaaactcaattcgacaggttttgcccgctttgactgggtttggttatgggtttgagtttttcccgattttcaaa-acgagtatggga 359  Q
    ||||| |||||||||||  ||||| ||| |||||| |||| ||||||||||||||  |||| ||||||||||| ||||||||  ||| || ||||| |||    
T  54317291 tacccgcccgaaccaaatccaatttgacgggttttccccgttttgactgggtttgagtatgtgtttgagttttccccgatttcaaaacacaagtatagga 54317192  T
Q  360 caggtaacggg 370  Q
    | |||||||||    
T  54317191 cgggtaacggg 54317181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 264 - 343
Target Start/End: Complemental strand, 34119800 - 34119721
Alignment:
Q  264 ccacccgaaccaaactcaattcgacaggttttgcccgctttgactgggtttggttatgggtttgagtttttcccgatttt 343  Q
    ||||||||||||||   |||| ||| |||||| |||  ||||| ||||||||| |||| |||||||||||||||||||||    
T  34119800 ccacccgaaccaaatctaatttgacgggttttccccattttgattgggtttgggtatgagtttgagtttttcccgatttt 34119721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 409 - 476
Target Start/End: Original strand, 37032192 - 37032259
Alignment:
Q  409 aatgtagaaaatcattttaataccccttttctataaataaaaatcgaaaccctaaatcatttcactca 476  Q
    |||||||||||| | |||| ||||| |||| ||||||||||||   ||||||||||||||||||||||    
T  37032192 aatgtagaaaattaatttattacccattttatataaataaaaactcaaaccctaaatcatttcactca 37032259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 261 - 340
Target Start/End: Original strand, 39655214 - 39655293
Alignment:
Q  261 tacccacccgaaccaaactcaattcgacaggttttgcccgctttgactgggtttggttatgggtttgagtttttcccgat 340  Q
    ||||| |||||||||||| ||||| ||| |||||| |||| ||||| ||||||||| ||||||| || ||||| ||||||    
T  39655214 tacccgcccgaaccaaacccaatttgacgggttttccccgttttgattgggtttgggtatgggtatgggttttccccgat 39655293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 269 - 420
Target Start/End: Complemental strand, 53632043 - 53631887
Alignment:
Q  269 cgaaccaaactcaattcgacaggttttgcccgctttgactgggtttggttatgggtttgagtttttcccgattttcaaa-acgagtatgggacaggtaac 367  Q
    ||||||||||| |||| ||| |||||| | || ||||| ||||| | | |||||||||||||||| ||  ||||| ||| ||| ||||| ||| ||||||    
T  53632043 cgaaccaaacttaatttgacgggttttcctcgttttgaatgggtataggtatgggtttgagttttcccaaattttaaaacacgtgtatgagacgggtaac 53631944  T
Q  368 ggggat----gtactcatcccgaatccatactcaaactcgtacctaatgtagaaaat 420  Q
    ||| ||    |||| || |||||| |||||||||||||||| || ||| ||||||||    
T  53631943 gggtatataggtacccaccccgaacccatactcaaactcgtcccgaatctagaaaat 53631887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 269 - 370
Target Start/End: Original strand, 48390766 - 48390868
Alignment:
Q  269 cgaaccaaactcaattcgacaggttttgcccgctttgactgggtttggttatgggtttgagtttttcccgattttcaaa-acgagtatgggacaggtaac 367  Q
    |||||||||  ||||| ||| | |||| |||| ||||||||||||||| ||||||| || ||||| ||||||||  ||| ||| ||||||||| ||||||    
T  48390766 cgaaccaaatccaatttgacggattttccccgttttgactgggtttgggtatgggtatgggttttccccgatttcaaaacacgggtatgggacgggtaac 48390865  T
Q  368 ggg 370  Q
    |||    
T  48390866 ggg 48390868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 267 - 368
Target Start/End: Complemental strand, 49580205 - 49580103
Alignment:
Q  267 cccgaaccaaactcaattcgacaggttttgcccgctttgactgggtttggttatgggtttgagtttttcccgattttcaaa-acgagtatgggacaggta 365  Q
    |||||||||||  ||||| ||| |||||| |||| ||||||||||||||| ||||||| || ||||| |||||| |  ||| ||| ||||||||| ||||    
T  49580205 cccgaaccaaatccaatttgacgggttttccccgttttgactgggtttgggtatgggtatgggttttccccgatctcaaaacacgggtatgggacgggta 49580106  T
Q  366 acg 368  Q
    |||    
T  49580105 acg 49580103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 261 - 342
Target Start/End: Complemental strand, 34026101 - 34026020
Alignment:
Q  261 tacccacccgaaccaaactcaattcgacaggttttgcccgctttgactgggtttggttatgggtttgagtttttcccgattt 342  Q
    ||||| |||||||||||  ||||| ||| | |||| |||| ||||||||||||||| ||||||| || ||||| ||||||||    
T  34026101 taccctcccgaaccaaaaccaatttgacggttttttcccgttttgactgggtttggatatgggtatgggttttccccgattt 34026020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 302 - 342
Target Start/End: Complemental strand, 2490411 - 2490371
Alignment:
Q  302 tttgactgggtttggttatgggtttgagtttttcccgattt 342  Q
    ||||||||||||||| |||||||||||||||| ||||||||    
T  2490411 tttgactgggtttggatatgggtttgagttttccccgattt 2490371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 279 - 370
Target Start/End: Complemental strand, 23580956 - 23580864
Alignment:
Q  279 tcaattcgacaggttttgcccgctttgactgggtttggttatgggtttgagtttttcccgattttcaaa-acgagtatgggacaggtaacggg 370  Q
    |||||| ||| |||||| |||| ||||||||||||||| ||||||| |||||||| ||| ||||  ||| |||||||||  || |||||||||    
T  23580956 tcaatttgacgggtttttcccgttttgactgggtttgggtatgggtatgagttttccccaatttcaaaacacgagtatgaaacgggtaacggg 23580864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 209 - 259
Target Start/End: Original strand, 33441389 - 33441439
Alignment:
Q  209 taattattgtattttaattagaaactaataagtggggtttagggtgttaca 259  Q
    |||||| | |||||| |||||||| ||||| ||||||||||||||||||||    
T  33441389 taattactatatttttattagaaaataatatgtggggtttagggtgttaca 33441439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 261 - 342
Target Start/End: Complemental strand, 4553337 - 4553256
Alignment:
Q  261 tacccacccgaaccaaactcaattcgacaggttttgcccgctttgactgggtttggttatgggtttgagtttttcccgattt 342  Q
    |||||||| |||||||||| || |  |  ||||||  |||||||||||||| || | |||| ||||||||||||||||||||    
T  4553337 tacccacctgaaccaaactgaaatttatgggttttctccgctttgactgggcttaggtatgcgtttgagtttttcccgattt 4553256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 269 - 330
Target Start/End: Original strand, 10371222 - 10371283
Alignment:
Q  269 cgaaccaaactcaattcgacaggttttgcccgctttgactgggtttggttatgggtttgagt 330  Q
    |||||||||| ||||| ||| |||||| |||| ||||||||||||||| | ||||| |||||    
T  10371222 cgaaccaaacccaatttgacgggttttccccgttttgactgggtttgggtttgggtatgagt 10371283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 409 - 478
Target Start/End: Complemental strand, 27937733 - 27937664
Alignment:
Q  409 aatgtagaaaatcattttaataccccttttctataaataaaaatcgaaaccctaaatcatttcactcaca 478  Q
    ||||||| |||| | |||| |||  ||||| |||||||| ||| | ||||||||||||||||||||||||    
T  27937733 aatgtaggaaattaatttattacagcttttatataaatagaaacctaaaccctaaatcatttcactcaca 27937664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #33
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 302 - 342
Target Start/End: Complemental strand, 19111840 - 19111800
Alignment:
Q  302 tttgactgggtttggttatgggtttgagtttttcccgattt 342  Q
    ||||| ||||||||| |||| ||||||||||||||||||||    
T  19111840 tttgattgggtttgggtatgagtttgagtttttcccgattt 19111800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #34
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 270 - 326
Target Start/End: Original strand, 23546898 - 23546954
Alignment:
Q  270 gaaccaaactcaattcgacaggttttgcccgctttgactgggtttggttatgggttt 326  Q
    ||||||||| |||||  || |||||| |||| ||||||||||||||| |||||||||    
T  23546898 gaaccaaacccaatttaacgggttttccccgttttgactgggtttgggtatgggttt 23546954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #35
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 268 - 316
Target Start/End: Original strand, 31271247 - 31271295
Alignment:
Q  268 ccgaaccaaactcaattcgacaggttttgcccgctttgactgggtttgg 316  Q
    ||||| ||||||||||| ||| | |||| ||||||||||||||||||||    
T  31271247 ccgaatcaaactcaatttgacggatttttcccgctttgactgggtttgg 31271295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #36
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 261 - 321
Target Start/End: Original strand, 44106735 - 44106794
Alignment:
Q  261 tacccacccgaaccaaactcaattcgacaggttttgcccgctttgactgggtttggttatg 321  Q
    ||||| ||||||| |||||||||| ||| |||||| |||| ||||||||||||||| ||||    
T  44106735 tacccgcccgaacaaaactcaatttgac-ggttttccccgttttgactgggtttgggtatg 44106794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #37
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 268 - 340
Target Start/End: Complemental strand, 44252887 - 44252815
Alignment:
Q  268 ccgaaccaaactcaattcgacaggttttgcccgctttgactgggtttggttatgggtttgagtttttcccgat 340  Q
    ||||| |||||  |||| ||| |||||| |||| ||||||||||||||| ||||||| || ||||| ||||||    
T  44252887 ccgaatcaaaccaaatttgacgggttttccccgttttgactgggtttgggtatgggtatgggttttccccgat 44252815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 73; Significance: 5e-33; HSPs: 38)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 73; E-Value: 5e-33
Query Start/End: Original strand, 382 - 550
Target Start/End: Original strand, 8545416 - 8545584
Alignment:
Q  382 cccgaatccatactcaaactcgtacctaatgtagaaaatcattttaataccccttttctataaataaaaatcgaaaccctaaatcatttcactcacatag 481  Q
    |||||| |||||||||||||||| || |||||||||||||| ||||  || |||||| |||||| | ||||| |||||||||||||||||||||| ||||    
T  8545416 cccgaacccatactcaaactcgtcccaaatgtagaaaatcaatttacaactccttttatataaacagaaatccaaaccctaaatcatttcactcaaatag 8545515  T
Q  482 tcaaagtctcgttcatttagttgacactctcttatcaaagttctcttttatctccttccatatctcaca 550  Q
     || ||||||| || || |  |||||||| ||||||| | |||||| || |||||||||||||||||||    
T  8545516 ccagagtctcggtctttcaaatgacactcacttatcataattctctcttttctccttccatatctcaca 8545584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 68; E-Value: 5e-30
Query Start/End: Original strand, 180 - 259
Target Start/End: Original strand, 4861236 - 4861315
Alignment:
Q  180 aagatgtgtgacacccttgcatgtttaattaattattgtattttaattagaaactaataagtggggtttagggtgttaca 259  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||| ||||||||||||||||||||    
T  4861236 aagatgtgtgacacccttgcatgtttaattaattattgtatttttattagaaaataatatgtggggtttagggtgttaca 4861315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 66; E-Value: 8e-29
Query Start/End: Original strand, 382 - 551
Target Start/End: Complemental strand, 28345512 - 28345343
Alignment:
Q  382 cccgaatccatactcaaactcgtacctaatgtagaaaatcattttaataccccttttctataaataaaaatcgaaaccctaaatcatttcactcacatag 481  Q
    |||||| |||||| |||||| || |  |||||||||||| | | || |||||||||| |||||||| ||| |||||  ||||||||||||||||||| ||    
T  28345512 cccgaacccatacccaaacttgtcctgaatgtagaaaataaatatattaccccttttatataaatagaaaccgaaattctaaatcatttcactcacacag 28345413  T
Q  482 tcaaagtctcgttcatttagttgacactctcttatcaaagttctcttttatctccttccatatctcacac 551  Q
    ||| ||||||  |  || || |||||||| ||||||| |||||||| |||||||||||||||||||||||    
T  28345412 tcatagtctcagtatttcagatgacactcacttatcatagttctctcttatctccttccatatctcacac 28345343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 374 - 557
Target Start/End: Complemental strand, 36275071 - 36274889
Alignment:
Q  374 gtactcatcccgaatccatactcaaactcgtacctaatgtagaaaatcattttaataccccttttctataaataaaaatcgaaaccctaaatcatttcac 473  Q
    ||||||| |||||| ||||||  ||||  || || |||||| ||||||| |||| || ||||||| |||||||| ||| | || ||||||||||||||||    
T  36275071 gtactcaccccgaacccatacctaaacatgtcccgaatgtaaaaaatcaatttactatcccttttatataaatagaaacccaa-ccctaaatcatttcac 36274973  T
Q  474 tcacatagtcaaagtctcgttcatttagttgacactctcttatcaaagttctcttttatctccttccatatctcacacgctagg 557  Q
    ||||| ||||||||||||| || || || |||||||| ||||||| ||| |||  || |||||||||||||||||||| |||||    
T  36274972 tcacacagtcaaagtctcggtctttcagatgacactcacttatcatagtcctcccttttctccttccatatctcacactctagg 36274889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 429 - 551
Target Start/End: Complemental strand, 5700330 - 5700208
Alignment:
Q  429 taccccttttctataaataaaaatcgaaaccctaaatcatttcactcacatagtcaaagtctcgttcatttagttgacactctcttatcaaagttctctt 528  Q
    |||||||||| |||||||  ||| |||||| |||||||||||||||| |||||||| |||||   || ||||| ||||| || ||||||| | ||||||     
T  5700330 taccccttttatataaattgaaaccgaaactctaaatcatttcactcccatagtcagagtcttagtcttttagatgacagtcacttatcataattctctc 5700231  T
Q  529 ttatctccttccatatctcacac 551  Q
    |||||||||| ||||||||||||    
T  5700230 ttatctcctttcatatctcacac 5700208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 180 - 259
Target Start/End: Complemental strand, 17288911 - 17288831
Alignment:
Q  180 aagatgtgtgacacccttgcatgtttaattaattattgta-ttttaattagaaactaataagtggggtttagggtgttaca 259  Q
    ||||||||||||| ||||||||||||||||||||||| || ||||| ||||||| ||||| ||||| ||||||||||||||    
T  17288911 aagatgtgtgacatccttgcatgtttaattaattattatatttttatttagaaaataatatgtgggttttagggtgttaca 17288831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 268 - 470
Target Start/End: Original strand, 27777146 - 27777354
Alignment:
Q  268 ccgaaccaaactcaattcgacaggttttgcccgctttgactgggtttggttatgggtttgagtttttcccgattttcaaa-acgagtatgggacaggtaa 366  Q
    |||||||||||| |||| ||| ||||||  ||| ||||||||||||||| |||| ||||||||||||||||||||  ||| ||  ||| |||||||||||    
T  27777146 ccgaaccaaacttaatttgacgggttttctccgttttgactgggtttgggtatgtgtttgagtttttcccgatttcaaaacacaggtacgggacaggtaa 27777245  T
Q  367 cggggat----gtactcatcccgaatccatactcaaactcgtacctaatgtagaaaatcattttaatacccc-ttttctataaataaaaatcgaaaccct 461  Q
    | | |||    |||| || |||||| |||||| ||||||||  |   || || ||||||| |||| |||||| |||| |||||||| ||||| |||| ||    
T  27777246 cagagatacaggtacccaccccgaacccatacccaaactcgctctacatatataaaatcaatttattacccctttttgtataaatagaaatctaaactct 27777345  T
Q  462 aaatcattt 470  Q
    |||||||||    
T  27777346 aaatcattt 27777354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 268 - 370
Target Start/End: Original strand, 29108770 - 29108873
Alignment:
Q  268 ccgaaccaaactcaattcgacaggttttgcccgctttgactgggtttggttatgggtttgagtttttcccgattttcaaa-acgagtatgggacaggtaa 366  Q
    ||||||||||| ||||| ||| |||||| |||| ||||||||||||||| ||||||| || ||||||||||||||| ||| | | ||||||||| |||||    
T  29108770 ccgaaccaaacccaatttgacgggttttccccgttttgactgggtttgggtatgggtatgggtttttcccgattttaaaacatgggtatgggacgggtaa 29108869  T
Q  367 cggg 370  Q
    ||||    
T  29108870 cggg 29108873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 372 - 551
Target Start/End: Complemental strand, 29918638 - 29918459
Alignment:
Q  372 atgtactcatcccgaatccatactcaaactcgtacctaatgtagaaaatcattttaataccccttttctataaataaaaatcgaaaccctaaatcatttc 471  Q
    |||||| || |||||| |||||| ||||| ||| || |||||| ||||||| |||| |||| ||||| |||||||| |||   |||||||||||||||||    
T  29918638 atgtacccaccccgaaaccatacacaaacccgtcccaaatgtaaaaaatcaatttattacctcttttatataaatagaaactcaaaccctaaatcatttc 29918539  T
Q  472 actcacatagtcaaagtctcgttcatttagttgacactctcttatcaaagttctcttttatctccttccatatctcacac 551  Q
    ||||||| ||| | ||||||  || || || |||||||   |||||| |||||| | || || |||||||||||| ||||    
T  29918538 actcacacagttagagtctcaatctttcagatgacacttagttatcatagttctatcttttcgccttccatatcttacac 29918459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 268 - 370
Target Start/End: Original strand, 39445524 - 39445627
Alignment:
Q  268 ccgaaccaaactcaattcgacaggttttgcccgctttgactgggtttggttatgggtttgagtttttcccgattttcaaa-acgagtatgggacaggtaa 366  Q
    ||||||||||||||||| ||| | |||| |||| ||||||| ||||||| ||||||| || ||||||||||||||  ||| ||| |||||||||||||||    
T  39445524 ccgaaccaaactcaatttgacggattttccccgttttgactaggtttgggtatgggtatgggtttttcccgatttcaaaacacgggtatgggacaggtaa 39445623  T
Q  367 cggg 370  Q
    ||||    
T  39445624 cggg 39445627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 261 - 370
Target Start/End: Original strand, 5858593 - 5858703
Alignment:
Q  261 tacccacccgaaccaaactcaattcgacaggttttgcccgctttgactgggtttggttatgggtttgagtttttcccgattttcaaa-acgagtatggga 359  Q
    |||| ||||||||||||  ||||| ||| |||||| |||| ||||| ||||||||| |||||||||| ||||||||||||||  ||| ||| ||||||||    
T  5858593 tacctacccgaaccaaatccaatttgacgggttttccccgttttgattgggtttgggtatgggtttgggtttttcccgatttaaaaacacgggtatggga 5858692  T
Q  360 caggtaacggg 370  Q
    | |||||||||    
T  5858693 cgggtaacggg 5858703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 409 - 551
Target Start/End: Original strand, 6388599 - 6388741
Alignment:
Q  409 aatgtagaaaatcattttaataccccttttctataaataaaaatcgaaaccctaaatcatttcactcacatagtcaaagtctcgttcatttagttgacac 508  Q
    |||||||||||||| |||| ||||| |||| |||||| | ||| | |||||||||||||||||||||||| | | | ||||||   | || |  ||||||    
T  6388599 aatgtagaaaatcaatttattacccattttatataaacagaaacccaaaccctaaatcatttcactcacacaattagagtctcagactttaaaatgacac 6388698  T
Q  509 tctcttatcaaagttctcttttatctccttccatatctcacac 551  Q
    || ||||||| ||||||||| | |||||||||||  |||||||    
T  6388699 tcacttatcatagttctcttctttctccttccatgcctcacac 6388741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 261 - 370
Target Start/End: Complemental strand, 27932560 - 27932450
Alignment:
Q  261 tacccacccgaaccaaactcaattcgacaggttttgcccgctttgactgggtttggttatgggtttgagtttttcccgattttcaaa-acgagtatggga 359  Q
    ||||| |||||||||||| ||||| ||| |||||| |||| ||||||||||||||| ||||||| || ||||| ||||||||  ||| ||| ||||||||    
T  27932560 tacccgcccgaaccaaacccaatttgacgggttttccccgttttgactgggtttgggtatgggtatgggttttccccgatttcaaaacacgggtatggga 27932461  T
Q  360 caggtaacggg 370  Q
    |  ||||||||    
T  27932460 cgagtaacggg 27932450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 99 - 248
Target Start/End: Complemental strand, 1216561 - 1216414
Alignment:
Q  99 atgtgaaaagttactttgatgttttgagaacttttcgacaacgacgtttttaatattaaacgaagtactttttgaatgattaagatgtgtgacacccttg 198  Q
    ||||||||| | ||||||||||| ||||||||||||  |  ||| ||||||| | ||||| |||||| ||||  | |||  |||||||||||||||||||    
T  1216561 atgtgaaaaatcactttgatgttatgagaacttttccgctgcgatgtttttatt-ttaaatgaagtattttt--attgaagaagatgtgtgacacccttg 1216465  T
Q  199 catgtttaa-ttaattattgtattttaattagaaactaataagtggggttt 248  Q
    ||||||||| ||  ||| |||||||| |||| ||| ||||| |||||||||    
T  1216464 catgtttaatttttttaatgtatttttattataaaataatatgtggggttt 1216414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 269 - 370
Target Start/End: Complemental strand, 20399731 - 20399629
Alignment:
Q  269 cgaaccaaactcaattcgacaggttttgcccgctttgactgggtttggttatgggtttgagtttttcccgattttcaaa-acgagtatgggacaggtaac 367  Q
    |||||||||| ||||| |||  ||||| |||| ||||||||||||||| |||||||||| |||||  |||||||  ||| ||| ||||||||| ||||||    
T  20399731 cgaaccaaacccaatttgacgagttttccccgttttgactgggtttgggtatgggtttgggttttctccgatttcaaaacacgggtatgggacgggtaac 20399632  T
Q  368 ggg 370  Q
    |||    
T  20399631 ggg 20399629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 261 - 370
Target Start/End: Complemental strand, 32303208 - 32303098
Alignment:
Q  261 tacccacccgaaccaaactcaattcgacaggttttgcccgctttgactgggtttggttatgggtttgagtttttcccgattttcaaa-acgagtatggga 359  Q
    ||||| |||||| ||||| ||||| ||| |||||| |||| ||||||||||||||| ||||||| || ||||| |||||| |  ||| ||| ||||||||    
T  32303208 tacccgcccgaaacaaacccaatttgacgggttttccccgttttgactgggtttgggtatgggtatgggttttccccgatctcgaaacacgggtatggga 32303109  T
Q  360 caggtaacggg 370  Q
    | |||||||||    
T  32303108 cgggtaacggg 32303098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 409 - 486
Target Start/End: Complemental strand, 30904040 - 30903963
Alignment:
Q  409 aatgtagaaaatcattttaataccccttttctataaataaaaatcgaaaccctaaatcatttcactcacatagtcaaa 486  Q
    |||||||||||||| |||| ||| | |||| |||||||| ||| | ||||| |||||||||||||||||| |||||||    
T  30904040 aatgtagaaaatcaatttattacacattttatataaatagaaaccaaaaccttaaatcatttcactcacacagtcaaa 30903963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 261 - 342
Target Start/End: Original strand, 43113567 - 43113648
Alignment:
Q  261 tacccacccgaaccaaactcaattcgacaggttttgcccgctttgactgggtttggttatgggtttgagtttttcccgattt 342  Q
    |||||||||||||||||| |||||  || |||||| || ||||||||||||||||  |||| | ||| ||||||||||||||    
T  43113567 tacccacccgaaccaaacccaatttaacgggttttccctgctttgactgggtttgcgtatgagattgggtttttcccgattt 43113648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 270 - 342
Target Start/End: Complemental strand, 14155670 - 14155598
Alignment:
Q  270 gaaccaaactcaattcgacaggttttgcccgctttgactgggtttggttatgggtttgagtttttcccgattt 342  Q
    ||||||||| ||||| ||| |||||| |||| | ||||||||||||| |||| ||||| ||||||||||||||    
T  14155670 gaaccaaacccaatttgacgggttttccccggtatgactgggtttgggtatgagtttgggtttttcccgattt 14155598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 261 - 333
Target Start/End: Complemental strand, 24928096 - 24928024
Alignment:
Q  261 tacccacccgaaccaaactcaattcgacaggttttgcccgctttgactgggtttggttatgggtttgagtttt 333  Q
    ||||| |||||||||||| ||||| ||| |||||| |||| ||||||||||||||| ||||||| || |||||    
T  24928096 tacccgcccgaaccaaacccaatttgacgggttttccccgttttgactgggtttgggtatgggtatgggtttt 24928024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 290 - 342
Target Start/End: Original strand, 27056525 - 27056577
Alignment:
Q  290 ggttttgcccgctttgactgggtttggttatgggtttgagtttttcccgattt 342  Q
    |||||| | ||||||| ||||||||||||||||||||| ||||||||||||||    
T  27056525 ggttttcctcgctttggctgggtttggttatgggtttgggtttttcccgattt 27056577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 261 - 340
Target Start/End: Original strand, 4230671 - 4230750
Alignment:
Q  261 tacccacccgaaccaaactcaattcgacaggttttgcccgctttgactgggtttggttatgggtttgagtttttcccgat 340  Q
    ||||| |||||||||||| ||||| ||| |||||| |||  ||||||||||||||| ||||||| || ||||| ||||||    
T  4230671 tacccgcccgaaccaaacccaatttgacgggttttccccattttgactgggtttgggtatgggtatgggttttccccgat 4230750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 261 - 367
Target Start/End: Original strand, 37960903 - 37961010
Alignment:
Q  261 tacccacccgaaccaaactcaattcgacaggttttgcccgctttgactgggtttggttatgggtttgagtttttcccgattttcaaa-acgagtatggga 359  Q
    |||||||||||||| |||  |||| ||  |||||| |||| ||||||| ||||||| |||| ||||| ||||| ||||||||  ||| ||| ||||||||    
T  37960903 tacccacccgaaccgaacctaatttgatgggtttttcccgttttgactaggtttgggtatgagtttgggttttccccgatttaaaaacacgggtatggga 37961002  T
Q  360 caggtaac 367  Q
    ||||||||    
T  37961003 caggtaac 37961010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 261 - 404
Target Start/End: Complemental strand, 1012765 - 1012618
Alignment:
Q  261 tacccacccgaaccaaactcaattcgacaggttttgcccgctttgactgggtttggttatgggtttgagtttttcccgattttcaaaacgagtatgggac 360  Q
    |||||||||||| ||||| ||||| ||| |||||| | || ||||| || |||||| |||| ||||| ||||| ||||||||  || | |||||||||||    
T  1012765 tacccacccgaatcaaacccaatttgacgggttttcctcgttttgattgagtttgggtatgagtttgggttttccccgatttaaaacatgagtatgggac 1012666  T
Q  361 aggtaacggggat----gtactcatcccgaatccatactcaaactcgt 404  Q
     ||||| ||| ||    |||| || |||||| |||||| |||||||||    
T  1012665 gggtaatgggtatataggtacccaccccgaacccatacccaaactcgt 1012618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 384 - 490
Target Start/End: Original strand, 9476082 - 9476188
Alignment:
Q  384 cgaatccatactcaaactcgtacctaatgtagaaaatcattttaataccccttttctataaataaaaatcgaaaccctaaatcatttcactcacatagtc 483  Q
    |||| |||||| ||||| | | || |||||||||||| |  ||| |||||||| | |||||||| |||| ||||| |||||| |||||||||||| ||||    
T  9476082 cgaacccatacccaaacccatcccgaatgtagaaaattaaattattaccccttatatataaatagaaattgaaactctaaattatttcactcacacagtc 9476181  T
Q  484 aaagtct 490  Q
    | |||||    
T  9476182 agagtct 9476188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 261 - 335
Target Start/End: Original strand, 29416128 - 29416202
Alignment:
Q  261 tacccacccgaaccaaactcaattcgacaggttttgcccgctttgactgggtttggttatgggtttgagtttttc 335  Q
    |||||||||||||||||  ||||| ||| |||||| |||| |||||||| |||||| |||| |||||| ||||||    
T  29416128 tacccacccgaaccaaatccaatttgacgggttttccccgttttgactgagtttgggtatgagtttgactttttc 29416202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #27
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 261 - 342
Target Start/End: Original strand, 15173821 - 15173902
Alignment:
Q  261 tacccacccgaaccaaactcaattcgacaggttttgcccgctttgactgggtttggttatgggtttgagtttttcccgattt 342  Q
    ||||| ||| |||||| ||| ||| ||| ||||||  | | ||||||||||||||| |||| ||||||||||||||||||||    
T  15173821 tacccgcccaaaccaacctcgatttgacgggttttctctgatttgactgggtttgggtatgtgtttgagtttttcccgattt 15173902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #28
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 261 - 314
Target Start/End: Original strand, 17084054 - 17084107
Alignment:
Q  261 tacccacccgaaccaaactcaattcgacaggttttgcccgctttgactgggttt 314  Q
    ||||||||||||||||| |||| | ||| |||||| ||||||||||||||||||    
T  17084054 tacccacccgaaccaaattcaagttgacgggttttccccgctttgactgggttt 17084107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #29
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 262 - 362
Target Start/End: Original strand, 32392328 - 32392429
Alignment:
Q  262 acccacccgaaccaaactcaattcgacaggttttgcccgctttgactgggtttggttatgggtttgagtttttcccgattttcaaa-acgagtatgggac 360  Q
    ||||||||||||||| | ||||| ||  |||||| |||||||| | ||||||| | ||||| |||| ||||||| ||||||  ||| |||||||||||||    
T  32392328 acccacccgaaccaaccccaatttgatgggtttttcccgctttaaatgggttttggtatggatttgggtttttctcgatttcaaaacacgagtatgggac 32392427  T
Q  361 ag 362  Q
    ||    
T  32392428 ag 32392429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #30
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 270 - 342
Target Start/End: Original strand, 40248321 - 40248393
Alignment:
Q  270 gaaccaaactcaattcgacaggttttgcccgctttgactgggtttggttatgggtttgagtttttcccgattt 342  Q
    ||||||||| ||||| ||| |||||| |||| ||||||||||||||| ||||||| |  ||||| ||||||||    
T  40248321 gaaccaaacccaatttgacgggtttttcccgttttgactgggtttgggtatgggtatatgttttccccgattt 40248393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #31
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 261 - 340
Target Start/End: Original strand, 2075775 - 2075854
Alignment:
Q  261 tacccacccgaaccaaactcaattcgacaggttttgcccgctttgactgggtttggttatgggtttgagtttttcccgat 340  Q
    ||||| || ||||||||| ||||| ||| | ||||  ||| ||||||||||||||| ||||||| || ||||||||||||    
T  2075775 tacccgcctgaaccaaacccaatttgacggattttctccgttttgactgggtttgggtatgggtatgggtttttcccgat 2075854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #32
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 261 - 316
Target Start/End: Complemental strand, 17469390 - 17469335
Alignment:
Q  261 tacccacccgaaccaaactcaattcgacaggttttgcccgctttgactgggtttgg 316  Q
    |||||||||||||||||| ||||| ||| | |||| |||| |||||||||||||||    
T  17469390 tacccacccgaaccaaacccaatttgacggattttccccgttttgactgggtttgg 17469335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #33
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 291 - 342
Target Start/End: Complemental strand, 29918724 - 29918673
Alignment:
Q  291 gttttgcccgctttgactgggtttggttatgggtttgagtttttcccgattt 342  Q
    ||||| || ||||||||||| ||||| |||| ||||||||||||||||||||    
T  29918724 gtttttcctgctttgactggttttgggtatgagtttgagtttttcccgattt 29918673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #34
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 140 - 259
Target Start/End: Complemental strand, 42144775 - 42144657
Alignment:
Q  140 cgacgtttttaatattaaacgaagtactttttgaatgattaagatgtgtgacacccttgcatgtttaattaattattgtattttaattagaaactaataa 239  Q
    |||| |||||||| ||||| |||||||||||  | |||  | ||||||||||||||||||  | || | |||||||  |||||| |||| ||| |||||     
T  42144775 cgacatttttaat-ttaaatgaagtacttttgaattgaggatgatgtgtgacacccttgcgcgctttaataattatcatatttttattataaaataatat 42144677  T
Q  240 gtggggtttagggtgttaca 259  Q
    |||||| |||||||||||||    
T  42144676 gtggggattagggtgttaca 42144657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #35
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 261 - 370
Target Start/End: Original strand, 15068529 - 15068639
Alignment:
Q  261 tacccacccgaaccaaactcaattcgacaggttttgcccgctttgactgggtttggttatgggtttgagtttttcccgattttcaaa-acgagtatggga 359  Q
    ||||| ||| |||||| | | ||| ||| |||||| |||| ||||||||||| ||| |||||||| | ||||| ||||||||  ||| ||| ||| ||||    
T  15068529 tacccgcccaaaccaaccccgatttgacgggttttccccgatttgactgggtctgggtatgggttcgggttttccccgatttcaaaatacgggtacggga 15068628  T
Q  360 caggtaacggg 370  Q
    |||||||||||    
T  15068629 caggtaacggg 15068639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #36
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 268 - 326
Target Start/End: Complemental strand, 34777200 - 34777142
Alignment:
Q  268 ccgaaccaaactcaattcgacaggttttgcccgctttgactgggtttggttatgggttt 326  Q
    ||||||||||| |||||  || |||||| |||| ||||||||||||||| |||||||||    
T  34777200 ccgaaccaaacccaatttaacgggtttttcccgttttgactgggtttgggtatgggttt 34777142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #37
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 390 - 551
Target Start/End: Complemental strand, 5793598 - 5793437
Alignment:
Q  390 catactcaaactcgtacctaatgtagaaaatcattttaataccccttttctataaataaaaatcgaaaccctaaatcatttcactcacatagtcaaagtc 489  Q
    ||||||||||||||| |  |||||| ||||||| || | || |  |||| |||||||| |||   |||||||||||||||||||||||| |  |||||||    
T  5793598 catactcaaactcgtcctaaatgtaaaaaatcaattaattatcatttttatataaatagaaactcaaaccctaaatcatttcactcacacaaccaaagtc 5793499  T
Q  490 tcgttcatttagttgacactctcttatcaaagttctcttttatctccttccatatctcacac 551  Q
    |   || ||  |  ||||||| ||| |  ||||||||| || |||||||||| |||||||||    
T  5793498 taagtctttctgacgacactcacttctttaagttctctcttttctccttccacatctcacac 5793437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #38
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 390 - 474
Target Start/End: Original strand, 39379654 - 39379737
Alignment:
Q  390 catactcaaactcgtacctaatgtagaaaatcattttaataccccttttctataaataaaaatcgaaaccctaaatcatttcact 474  Q
    ||||||||||||||| || ||||||| |||||| |||| ||  |||| | |||||||| ||||| ||| | ||||||||||||||    
T  39379654 catactcaaactcgtcccgaatgtagtaaatcaatttatta-tccttctgtataaatagaaatccaaatcttaaatcatttcact 39379737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 67; Significance: 2e-29; HSPs: 34)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 372 - 550
Target Start/End: Original strand, 1947848 - 1948026
Alignment:
Q  372 atgtactcatcccgaatccatactcaaactcgtacctaatgtagaaaatcattttaataccccttttctataaataaaaatcgaaaccctaaatcatttc 471  Q
    ||||||||||| | || |||||||||||||||| || |||||||||||||| |||| |||||||||| |||||||||||||| ||||||||| |||||      
T  1947848 atgtactcatctcaaacccatactcaaactcgttccaaatgtagaaaatcaatttattaccccttttatataaataaaaatccaaaccctaagtcattat 1947947  T
Q  472 actcacatagtcaaagtctcgttcatttagttgacactctcttatcaaagttctcttttatctccttccatatctcaca 550  Q
    ||||||| ||||| ||| ||   | || || |||||||| ||||||| ||||| || || ||| ||| |||||||||||    
T  1947948 actcacacagtcagagtatctgactttcagatgacactcacttatcatagttccctcttttctactttcatatctcaca 1948026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 382 - 550
Target Start/End: Complemental strand, 9402610 - 9402442
Alignment:
Q  382 cccgaatccatactcaaactcgtacctaatgtagaaaatcattttaataccccttttctataaataaaaatcgaaaccctaaatcatttcactcacatag 481  Q
    |||||| ||||||||||||  ||  | |||||||||||||| |||| |||||| ||| |||||||| ||| | |||||||||||||||||||||||| ||    
T  9402610 cccgaacccatactcaaacctgtctcgaatgtagaaaatcaatttagtaccccatttatataaatagaaacccaaaccctaaatcatttcactcacacag 9402511  T
Q  482 tcaaagtctcgttcatttagttgacactctcttatcaaagttctcttttatctccttccatatctcaca 550  Q
    ||| ||||| | || || |  | |||||| ||||||| |||||||| || |||||||||||||||||||    
T  9402510 tcagagtctaggtctttcatatcacactcacttatcatagttctctcttttctccttccatatctcaca 9402442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 154 - 260
Target Start/End: Complemental strand, 22461334 - 22461226
Alignment:
Q  154 ttaaacgaagtactttttgaatgattaagatgtgtgacacccttgcatgtttaattaattattgtattttaattagaaactaataagt--ggggtttagg 251  Q
    ||||| |||||| ||||| | |||  ||||||||||||||||||| |||||||||||||||||||||||| |||||||| ||| | ||  ||||||||||    
T  22461334 ttaaatgaagtattttttaattgaagaagatgtgtgacacccttgaatgtttaattaattattgtattttcattagaaattaaaatgtgcggggtttagg 22461235  T
Q  252 gtgttacaa 260  Q
    |||||||||    
T  22461234 gtgttacaa 22461226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 190 - 259
Target Start/End: Complemental strand, 32184625 - 32184556
Alignment:
Q  190 acacccttgcatgtttaattaattattgtattttaattagaaactaataagtggggtttagggtgttaca 259  Q
    ||||| ||||||||||||||||||| |||||||| |||||||| ||||||||||||||||||||||||||    
T  32184625 acacctttgcatgtttaattaattactgtatttttattagaaaataataagtggggtttagggtgttaca 32184556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 268 - 419
Target Start/End: Complemental strand, 27534824 - 27534668
Alignment:
Q  268 ccgaaccaaactcaattcgacaggttttgcccgctttgactgggtttggttatgggtttgagtttttcccgattttcaaa-acgagtatgggacaggtaa 366  Q
    ||||||||||||||||| ||| |||||| |||| ||||| ||||||||| ||||||| |||||||| |||||| |  ||| ||| ||||||||| |||||    
T  27534824 ccgaaccaaactcaatttgacgggttttccccgttttgattgggtttgggtatgggtatgagttttccccgatctcgaaacacgggtatgggacgggtaa 27534725  T
Q  367 cggggat----gtactcatcccgaatccatactcaaactcgtacctaatgtagaaaa 419  Q
    |||| ||    |||| || ||||||||||||| ||||| ||| || |||||| ||||    
T  27534724 cgggtatataggtacccaccccgaatccatacccaaacccgtcccaaatgtaaaaaa 27534668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 267 - 370
Target Start/End: Original strand, 5863330 - 5863434
Alignment:
Q  267 cccgaaccaaactcaattcgacaggttttgcccgctttgactgggtttggttatgggtttgagtttttcccgattttcaaa-acgagtatgggacaggta 365  Q
    |||||||||||| ||||| ||| |||||| |||| ||||||||||||||| ||||||| || ||||| ||||||||  ||| ||| ||||||||| ||||    
T  5863330 cccgaaccaaacccaatttgacgggttttccccgttttgactgggtttgggtatgggtatgggttttccccgatttcaaaacacgggtatgggacgggta 5863429  T
Q  366 acggg 370  Q
    |||||    
T  5863430 acggg 5863434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 261 - 370
Target Start/End: Complemental strand, 30986400 - 30986290
Alignment:
Q  261 tacccacccgaaccaaactcaattcgacaggttttgcccgctttgactgggtttggttatgggtttgagtttttcccgattttcaaa-acgagtatggga 359  Q
    ||||| |||||||||||||||||| ||| |||||| |||| |||||||| |||||| ||||||| || ||||| |||||| |  ||| ||| ||||||||    
T  30986400 tacccgcccgaaccaaactcaatttgacgggttttccccgttttgactgagtttgggtatgggtatgggttttccccgatctcaaaacacgggtatggga 30986301  T
Q  360 caggtaacggg 370  Q
    | |||||||||    
T  30986300 cgggtaacggg 30986290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 440 - 550
Target Start/End: Original strand, 34346139 - 34346249
Alignment:
Q  440 tataaataaaaatcgaaaccctaaatcatttcactcacatagtcaaagtctcgttcatttagttgacactctcttatcaaagttctcttttatctccttc 539  Q
    |||||||| ||| | |||||||||||||||||||||||| ||||| ||||||  || ||||| ||| | || ||||||| |||||| | || ||| ||||    
T  34346139 tataaatagaaacccaaaccctaaatcatttcactcacacagtcagagtctcagtcttttagatgagagtcacttatcatagttctatcttttcttcttc 34346238  T
Q  540 catatctcaca 550  Q
    |||||||||||    
T  34346239 catatctcaca 34346249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 271 - 340
Target Start/End: Complemental strand, 31496571 - 31496502
Alignment:
Q  271 aaccaaactcaattcgacaggttttgcccgctttgactgggtttggttatgggtttgagtttttcccgat 340  Q
    |||||||||||||| ||| |||||| |||| ||||||||||||||| ||||||| |||||||| ||||||    
T  31496571 aaccaaactcaatttgacgggttttccccgttttgactgggtttgggtatgggtatgagttttccccgat 31496502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 271 - 340
Target Start/End: Complemental strand, 31501957 - 31501888
Alignment:
Q  271 aaccaaactcaattcgacaggttttgcccgctttgactgggtttggttatgggtttgagtttttcccgat 340  Q
    |||||||||||||| ||| |||||| |||| ||||||||||||||| ||||||| |||||||| ||||||    
T  31501957 aaccaaactcaatttgacgggttttccccgttttgactgggtttgggtatgggtatgagttttccccgat 31501888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 267 - 370
Target Start/End: Complemental strand, 9442570 - 9442467
Alignment:
Q  267 cccgaaccaaactcaattcgacaggttttgcccgctttgactgggtttggttatgggtttgagtttttcccgattttcaaa-acgagtatgggacaggta 365  Q
    |||||||||||||||||| ||| |||||| |||| ||||||| ||||||| ||||||| || | ||||||||||||  ||| ||| ||||||||| ||||    
T  9442570 cccgaaccaaactcaatttgacgggttttccccgttttgact-ggtttgggtatgggtatgggattttcccgatttcaaaacacgggtatgggacgggta 9442472  T
Q  366 acggg 370  Q
    |||||    
T  9442471 acggg 9442467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 268 - 420
Target Start/End: Complemental strand, 32853984 - 32853827
Alignment:
Q  268 ccgaaccaaactcaattcgacaggttttgcccgctttgactgggtttggttatgggtttgagtttttcccgattttcaaa-acgagtatgggacaggtaa 366  Q
    ||||||||||| ||||| ||| ||||||  ||| ||||||||||||||||||||||| || ||||| |||||| |  ||| ||| ||||||||| |||||    
T  32853984 ccgaaccaaacccaatttgacgggttttctccgttttgactgggtttggttatgggtatgggttttccccgatctcaaaacacgggtatgggacgggtaa 32853885  T
Q  367 cggggat----gtactcatcccgaatccatactcaaactcgtacctaatgtagaaaat 420  Q
    |||| ||    |||| || |||||| |||||| ||||| ||| || |||||| |||||    
T  32853884 cgggtatataggtacccaccccgaacccatacccaaacccgtcccaaatgtaaaaaat 32853827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 261 - 340
Target Start/End: Original strand, 10188021 - 10188100
Alignment:
Q  261 tacccacccgaaccaaactcaattcgacaggttttgcccgctttgactgggtttggttatgggtttgagtttttcccgat 340  Q
    ||||| |||||||||||| ||||| ||| |||||| |||| ||||||||||||||| ||||||| || ||||| ||||||    
T  10188021 tacccgcccgaaccaaacccaatttgacgggttttccccgttttgactgggtttgggtatgggtatgggttttccccgat 10188100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 461 - 551
Target Start/End: Original strand, 2126767 - 2126857
Alignment:
Q  461 taaatcatttcactcacatagtcaaagtctcgttcatttagttgacactctcttatcaaagttctcttttatctccttccatatctcacac 551  Q
    |||||||||||||| ||| ||| ||||||||| |  ||||| | ||||||  |||||| |||||||| || ||||||||||||||||||||    
T  2126767 taaatcatttcacttacagagttaaagtctcggtattttagatcacactcagttatcatagttctctcttttctccttccatatctcacac 2126857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 269 - 370
Target Start/End: Original strand, 10142467 - 10142569
Alignment:
Q  269 cgaaccaaactcaattcgacaggttttgcccgctttgactgggtttggttatgggtttgagtttttcccgat-tttcaaaacgagtatgggacaggtaac 367  Q
    |||||||||||||||| | | |||||| | || ||||||||||||||| ||||||| || ||||| |||||| |   |||||| ||||||||||||||||    
T  10142467 cgaaccaaactcaatttggcgggttttcctcgttttgactgggtttgggtatgggtatgggttttccccgatctcaaaaaacgggtatgggacaggtaac 10142566  T
Q  368 ggg 370  Q
    |||    
T  10142567 ggg 10142569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 409 - 551
Target Start/End: Complemental strand, 14321861 - 14321721
Alignment:
Q  409 aatgtagaaaatcattttaataccccttttctataaataaaaatcgaaaccctaaatcatttcactcacatagtcaaagtctcgttcatttagttgacac 508  Q
    |||||||||||| | |||| ||||  |||| |||||||| |||   ||| | ||||||||||||||||| | | ||||||||||||| || || |||||     
T  14321861 aatgtagaaaattaatttattacctattttatataaatagaaactcaaatcttaaatcatttcactcacgt-gacaaagtctcgttctttaagatgacaa 14321763  T
Q  509 tctcttatcaaagttctcttttatctccttccatatctcacac 551  Q
    || ||||||| | ||||||||| ||||||| ||||||||||||    
T  14321762 tcacttatcataattctctttt-tctcctttcatatctcacac 14321721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 99 - 260
Target Start/End: Original strand, 19770832 - 19770992
Alignment:
Q  99 atgtgaaaagttactttgatgttttgagaacttttcgacaacgacgtttttaatattaaacgaagtactttttgaatgattaagatgtgtgacacccttg 198  Q
    ||||||||| | |||||||||||  |||||||||||  |   || ||||||||| ||||| |||||| ||||  | |||  |||||||||||||||||||    
T  19770832 atgtgaaaaatcactttgatgttacgagaacttttccgctgtgatgtttttaat-ttaaatgaagtattttt--attgaagaagatgtgtgacacccttg 19770928  T
Q  199 catgtttaa-ttaattattgtattttaattagaaactaataagtggg-gtttagggtgttacaa 260  Q
    ||||||||| ||  ||| |||||||| |||| ||| ||||| |||||  |||||||||||||||    
T  19770929 catgtttaatttttttaatgtatttttattataaaataatatgtgggtttttagggtgttacaa 19770992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 261 - 340
Target Start/End: Original strand, 3483864 - 3483943
Alignment:
Q  261 tacccacccgaaccaaactcaattcgacaggttttgcccgctttgactgggtttggttatgggtttgagtttttcccgat 340  Q
    ||||| |||||||||||| ||||| ||| |||||| |||| ||||||||||||||| |||| || || ||||| ||||||    
T  3483864 tacccgcccgaaccaaacccaatttgacgggttttccccgttttgactgggtttgggtatgtgtatgggttttccccgat 3483943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 261 - 342
Target Start/End: Original strand, 12678035 - 12678116
Alignment:
Q  261 tacccacccgaaccaaactcaattcgacaggttttgcccgctttgactgggtttggttatgggtttgagtttttcccgattt 342  Q
    |||||||| |||||||||  |  ||||||||||||  ||| ||||||||||||||| |||| ||||| ||||| ||||||||    
T  12678035 tacccacctgaaccaaacctatctcgacaggttttcgccgttttgactgggtttgggtatgagtttgcgttttccccgattt 12678116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 267 - 367
Target Start/End: Complemental strand, 27738913 - 27738812
Alignment:
Q  267 cccgaaccaaactcaattcgacaggttttgcccgctttgactgggtttggttatgggtttgagtttttcccgattttcaaa-acgagtatgggacaggta 365  Q
    ||||||||||| |||||| ||  |||||| |||| ||||||||||||| | ||||||| || ||||| ||||||||  ||| ||| ||||||||| ||||    
T  27738913 cccgaaccaaattcaatttgatgggtttttcccgttttgactgggtttaggtatgggtatgggttttccccgatttcaaaacacgggtatgggacgggta 27738814  T
Q  366 ac 367  Q
    ||    
T  27738813 ac 27738812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 269 - 426
Target Start/End: Complemental strand, 29341395 - 29341233
Alignment:
Q  269 cgaaccaaactcaattcgacaggttttgcccgctttgactgggtttggttatgggtttgagtttttcccgattttcaaa-acgagtatgggacaggtaac 367  Q
    |||| ||||||||||| ||   |||||  ||| ||||| ||||||||| |||| ||||| ||||||||||||||||||| | | | ||| ||| ||||||    
T  29341395 cgaatcaaactcaatttgatgagttttctccgttttgattgggtttggatatgagtttgggtttttcccgattttcaaacatgggcatgagacgggtaac 29341296  T
Q  368 ggggat----gtactcatcccgaatccatactcaaactcgtacctaatgtagaaaatcatttt 426  Q
    || |||    |||| |||||| ||  ||||| ||||| ||| || ||||||||||||||||||    
T  29341295 ggagatataggtacccatcccaaactcatacccaaacccgtcccgaatgtagaaaatcatttt 29341233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 455 - 551
Target Start/End: Original strand, 8320935 - 8321031
Alignment:
Q  455 aaaccctaaatcatttcactcacatagtcaaagtctcgttcatttagttgacactctcttatcaaagttctcttttatctccttccatatctcacac 551  Q
    |||||||||||||||||||| ||| ||||| ||||||| || || ||  |||| || ||||||| |||| ||| || ||| | ||||||||||||||    
T  8320935 aaaccctaaatcatttcacttacacagtcagagtctcggtctttcagacgacattcacttatcatagttatctattttcttcgtccatatctcacac 8321031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 261 - 333
Target Start/End: Complemental strand, 12141532 - 12141460
Alignment:
Q  261 tacccacccgaaccaaactcaattcgacaggttttgcccgctttgactgggtttggttatgggtttgagtttt 333  Q
    ||||| ||||||||||| |||||| ||| |||||| |||| ||||||||||||||| || |||| || |||||    
T  12141532 tacccgcccgaaccaaattcaatttgacgggttttccccgttttgactgggtttgggtacgggtatgggtttt 12141460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 261 - 333
Target Start/End: Complemental strand, 14255104 - 14255032
Alignment:
Q  261 tacccacccgaaccaaactcaattcgacaggttttgcccgctttgactgggtttggttatgggtttgagtttt 333  Q
    ||||||| |||| ||||| || || ||||| |||| | || ||||||||||||||| ||||||||||||||||    
T  14255104 tacccactcgaatcaaacccattttgacagattttcctcgttttgactgggtttgggtatgggtttgagtttt 14255032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #25
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 268 - 370
Target Start/End: Complemental strand, 2367466 - 2367363
Alignment:
Q  268 ccgaaccaaactcaattcgacaggttttgcccgctttgactgggtttggttatgggtttgagtttttcccgattttcaaa-acgagtatgggacaggtaa 366  Q
    ||||||||||| ||||| ||  |||||| |||| ||||||| ||||||| ||||||| || ||||| |||||| |  ||| ||| ||||||||| |||||    
T  2367466 ccgaaccaaacccaatttgatgggtttttcccgttttgactaggtttgggtatgggtatgggttttccccgatctcaaaacacgggtatgggacgggtaa 2367367  T
Q  367 cggg 370  Q
    ||||    
T  2367366 cggg 2367363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #26
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 268 - 359
Target Start/End: Complemental strand, 30816398 - 30816308
Alignment:
Q  268 ccgaaccaaactcaattcgacaggttttgcccgctttgactgggtttggttatgggtttgagtttttcccgattttcaaaacgagtatggga 359  Q
    ||||||||||| ||||| ||  | |||| |||| ||||| ||||||||| |||||||||||| ||||||| ||||| || ||| ||||||||    
T  30816398 ccgaaccaaacccaatttgatggattttccccgttttgattgggtttggatatgggtttgag-ttttccccattttaaacacgggtatggga 30816308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #27
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 300 - 342
Target Start/End: Original strand, 5108911 - 5108953
Alignment:
Q  300 gctttgactgggtttggttatgggtttgagtttttcccgattt 342  Q
    ||||| ||||||||| | |||||||||||||||||||||||||    
T  5108911 gcttttactgggtttcggtatgggtttgagtttttcccgattt 5108953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #28
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 260 - 373
Target Start/End: Complemental strand, 9458811 - 9458697
Alignment:
Q  260 atacccacccgaaccaaactcaattcgacaggttttgcccgctttgactgggtttggttatgggtttgagtttttcccgattttcaaa-acgagtatggg 358  Q
    |||||| ||| |||||| ||| ||| ||| | |||| |||| ||||||||||||||| |||| ||||||| ||| ||| ||||  ||| ||| ||| |||    
T  9458811 ataccctcccaaaccaacctcgatttgacggattttccccgatttgactgggtttgggtatgagtttgagatttccccaatttcaaaatacgggtacggg 9458712  T
Q  359 acaggtaacggggat 373  Q
    |||| ||||||||||    
T  9458711 acagataacggggat 9458697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #29
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 272 - 326
Target Start/End: Complemental strand, 32053218 - 32053164
Alignment:
Q  272 accaaactcaattcgacaggttttgcccgctttgactgggtttggttatgggttt 326  Q
    ||||||| ||||| ||| |||||| |||| ||||||||||||||| |||||||||    
T  32053218 accaaacccaatttgacgggttttccccgttttgactgggtttgggtatgggttt 32053164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #30
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 265 - 342
Target Start/End: Original strand, 256437 - 256514
Alignment:
Q  265 cacccgaaccaaactcaattcgacaggttttgcccgctttgactgggtttggttatgggtttgagtttttcccgattt 342  Q
    ||||||||||||||||||||  |  | |||| |||||||||  || |||||| |||| ||||||||||| ||||||||    
T  256437 cacccgaaccaaactcaatttaatggattttccccgctttggttgtgtttgggtatgagtttgagttttccccgattt 256514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #31
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 455 - 551
Target Start/End: Complemental strand, 20349011 - 20348917
Alignment:
Q  455 aaaccctaaatcatttcactcacatagtcaaagtctcgttcatttagttgacactctcttatcaaagttctcttttatctccttccatatctcacac 551  Q
    ||||||||||||| ||||||||||   ||| ||||| |  | || || |||||||  ||||||| |||||||| || ||||||||||||||||||||    
T  20349011 aaaccctaaatcacttcactcacac--tcagagtcttggactttcagatgacacttacttatcatagttctctcttttctccttccatatctcacac 20348917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #32
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 298 - 343
Target Start/End: Complemental strand, 30624525 - 30624480
Alignment:
Q  298 ccgctttgactgggtttggttatgggtttgagtttttcccgatttt 343  Q
    ||||||||||||||||||| | |||||||| ||||| |||||||||    
T  30624525 ccgctttgactgggtttgggtttgggtttgggttttccccgatttt 30624480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #33
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 175 - 259
Target Start/End: Original strand, 19566032 - 19566116
Alignment:
Q  175 tgattaagatgtgtgacacccttgcatgtttaattaattattgtattttaattagaaactaataagtggggtttagggtgttaca 259  Q
    |||| |||||||||||||||||| | || || | |||||||| | |||| |||||||| | ||| || ||||||| |||||||||    
T  19566032 tgatgaagatgtgtgacacccttacgtgctttaataattattatgtttttattagaaaatgatatgttgggtttatggtgttaca 19566116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #34
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 199 - 231
Target Start/End: Complemental strand, 32184814 - 32184782
Alignment:
Q  199 catgtttaattaattattgtattttaattagaa 231  Q
    ||||||||||||||||||||||||| |||||||    
T  32184814 catgtttaattaattattgtatttttattagaa 32184782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 67; Significance: 2e-29; HSPs: 50)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 409 - 551
Target Start/End: Original strand, 33616210 - 33616352
Alignment:
Q  409 aatgtagaaaatcattttaataccccttttctataaataaaaatcgaaaccctaaatcatttcactcacatagtcaaagtctcgttcatttagttgacac 508  Q
    |||||||||||||| |||| |||||||||| |||||||||||||| |||||||||||||||||||||||| ||||| |||||   |  || |  ||||||    
T  33616210 aatgtagaaaatcaatttattaccccttttatataaataaaaatcaaaaccctaaatcatttcactcacacagtcagagtcttaatatttcatatgacac 33616309  T
Q  509 tctcttatcaaagttctcttttatctccttccatatctcacac 551  Q
    || ||||||| |||||||| || ||||| ||||||||||||||    
T  33616310 tcacttatcatagttctctcttttctccatccatatctcacac 33616352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 180 - 259
Target Start/End: Complemental strand, 15710008 - 15709929
Alignment:
Q  180 aagatgtgtgacacccttgcatgtttaattaattattgtattttaattagaaactaataagtggggtttagggtgttaca 259  Q
    |||||||||||||||||||||||||||||||||||||||| ||| |||||||| ||||| ||||||||||||||||||||    
T  15710008 aagatgtgtgacacccttgcatgtttaattaattattgtacttttattagaaaataatatgtggggtttagggtgttaca 15709929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 180 - 258
Target Start/End: Complemental strand, 15702859 - 15702781
Alignment:
Q  180 aagatgtgtgacacccttgcatgtttaattaattattgtattttaattagaaactaataagtggggtttagggtgttac 258  Q
    |||||||||||||||||||||||||||||||||||||||| ||| |||||||| ||||| ||| |||||||||||||||    
T  15702859 aagatgtgtgacacccttgcatgtttaattaattattgtacttttattagaaaataatatgtgaggtttagggtgttac 15702781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 261 - 551
Target Start/End: Original strand, 21956756 - 21957050
Alignment:
Q  261 tacccacccgaaccaaactcaattcgacaggttttgcccgctttgactgggtttggttatgggtttgagtttttcccgattttcaaa-acgagtatggga 359  Q
    ||||| |||||||||||   |||| |||||||||| |||  ||| | ||| ||||| |||| ||||| |||||| |||||||| ||| ||| ||| || |    
T  21956756 tacccgcccgaaccaaatcaaatttgacaggtttttcccattttaattggatttgggtatgagtttgggttttttccgattttaaaacacgggtacggaa 21956855  T
Q  360 caggtaacggggatgta----ctcatcccgaatccatactcaaactcgtacctaatgtagaaaatcattttaataccccttttctataaataaaaatcga 455  Q
       ||||||||||| ||    | || |||||| |||||| |||||||||  | |||||||||||||| |||| ||||| |||| |||||||||||| | |    
T  21956856 tgagtaacggggatataggtgcccaccccgaacccatacccaaactcgttacgaatgtagaaaatcaatttattaccc-ttttatataaataaaaaccca 21956954  T
Q  456 aaccctaaatcatttcactcacatagtcaaagtctcgttcatttagttgacactctcttatcaaagttctcttttatctccttccatatctcacac 551  Q
    ||||||||||||||||| || || ||||| ||| ||  || ||||| ||||||||  |||||| |||| | | || ||||||||||||||||||||    
T  21956955 aaccctaaatcatttcattcgcacagtcagagtgtcagtcttttagatgacactcatttatcatagttatatcttttctccttccatatctcacac 21957050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 268 - 478
Target Start/End: Complemental strand, 36919269 - 36919054
Alignment:
Q  268 ccgaaccaaactcaattcgacaggttttgcccgctttgactgggtttggttatgggtttgagtttttcccgattttcaaa-acgagtatgggacaggtaa 366  Q
    ||||||||||||||||| ||| |||||| | |||||| ||||||||||| |||| ||||||||||| ||||| ||| ||| | | |||| ||||  ||||    
T  36919269 ccgaaccaaactcaatttgacgggtttttctcgctttaactgggtttgggtatgagtttgagttttccccgactttaaaacatgtgtataggacgagtaa 36919170  T
Q  367 cggggat----gtactcatcccgaatccatactcaaactcgtacctaatgtagaaaatcattttaataccccttttctataaataaaaatcgaaacccta 462  Q
    || ||||    |||  |||||  || |||||| ||||||||| ||  ||||||||||||| |||| |||| ||||| |||||||| |||   |||| |||    
T  36919169 cgtggatataggtatccatccttaacccatacccaaactcgttccggatgtagaaaatcagtttattaccacttttatataaatagaaactcaaactcta 36919070  T
Q  463 aatcatttcactcaca 478  Q
    ||||||||||||||||    
T  36919069 aatcatttcactcaca 36919054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 180 - 260
Target Start/End: Original strand, 25128081 - 25128161
Alignment:
Q  180 aagatgtgtgacacccttgcatgtttaattaattattgtattttaattagaaactaataagtggggtttagggtgttacaa 260  Q
    ||||||||||||||||||||||||||||||||||||||||  || |||||||| ||| | | |||||||||||||||||||    
T  25128081 aagatgtgtgacacccttgcatgtttaattaattattgtacgtttattagaaaataaaatgaggggtttagggtgttacaa 25128161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 261 - 342
Target Start/End: Original strand, 1724212 - 1724292
Alignment:
Q  261 tacccacccgaaccaaactcaattcgacaggttttgcccgctttgactgggtttggttatgggtttgagtttttcccgattt 342  Q
    |||||||||||||||||||||||| |||  ||||| |||| ||||||||||||||| |||||||||| ||||||||||||||    
T  1724212 tacccacccgaaccaaactcaatttgacgtgttttccccg-tttgactgggtttgggtatgggtttgggtttttcccgattt 1724292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 261 - 342
Target Start/End: Complemental strand, 37349265 - 37349184
Alignment:
Q  261 tacccacccgaaccaaactcaattcgacaggttttgcccgctttgactgggtttggttatgggtttgagtttttcccgattt 342  Q
    ||||| |||||||||||| ||||| |||||||||| |||| ||||||||||||||| |||| ||||||||||| ||||||||    
T  37349265 tacccgcccgaaccaaacccaatttgacaggttttccccgttttgactgggtttgggtatgagtttgagttttccccgattt 37349184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 268 - 551
Target Start/End: Original strand, 8843754 - 8844041
Alignment:
Q  268 ccgaaccaaactcaattcgacaggttttgcccgctttgactgggtttggttatgggtttgagtttttcccgattttcaaa-acgagtatgggacaggtaa 366  Q
    |||||||||| | |||| ||| |||||| |  ||||||||||||||||| |||| |||||| |||||||||||||| ||| ||  ||  ||||| ||||     
T  8843754 ccgaaccaaattaaatttgacgggttttccgtgctttgactgggtttggatatgtgtttgaatttttcccgattttaaaacacaggtgcgggacgggtag 8843853  T
Q  367 cggggat----gtactcatcccgaatccatactcaaactcgtacctaatgtagaaaatcattttaataccccttttctataaataaaaatcgaaacccta 462  Q
    |||||||     ||| || ||||||  ||||| ||||| |||    |||||||||||| | |||| |||||||||  |||||||| |||   ||| ||||    
T  8843854 cggggatatagataccca-cccgaactcatacccaaacccgtcgtgaatgtagaaaattaatttattacccctttcatataaatagaaacttaaatccta 8843952  T
Q  463 aatcatttcactcacatagtcaaagtctcgttcatttagttgacactctcttatcaaagttctcttttatctccttccatatctcacac 551  Q
    |||||||||||||||| ||||| |||||    | || || |||||||| ||||||| |||||||| || |||||||||||  |||||||    
T  8843953 aatcatttcactcacacagtcacagtcttagactttcagatgacactcacttatcatagttctctcttttctccttccatgcctcacac 8844041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 268 - 551
Target Start/End: Original strand, 8856718 - 8857005
Alignment:
Q  268 ccgaaccaaactcaattcgacaggttttgcccgctttgactgggtttggttatgggtttgagtttttcccgattttcaaa-acgagtatgggacaggtaa 366  Q
    |||||||||| | |||| ||| |||||| |  ||||||||||||||||| |||| |||||| |||||||||||||| ||| ||  ||  ||||| ||||     
T  8856718 ccgaaccaaattaaatttgacgggttttccgtgctttgactgggtttggatatgtgtttgaatttttcccgattttaaaacacaggtgcgggacgggtag 8856817  T
Q  367 cggggat----gtactcatcccgaatccatactcaaactcgtacctaatgtagaaaatcattttaataccccttttctataaataaaaatcgaaacccta 462  Q
    |||||||     ||| || ||||||  ||||| ||||| |||    |||||||||||| | |||| |||||||||  |||||||| |||   ||| ||||    
T  8856818 cggggatatagataccca-cccgaactcatacccaaacccgtcgtgaatgtagaaaattaatttattacccctttcatataaatagaaacttaaatccta 8856916  T
Q  463 aatcatttcactcacatagtcaaagtctcgttcatttagttgacactctcttatcaaagttctcttttatctccttccatatctcacac 551  Q
    |||||||||||||||| ||||| |||||    | || || |||||||| ||||||| |||||||| || |||||||||||  |||||||    
T  8856917 aatcatttcactcacacagtcacagtcttagactttcagatgacactcacttatcatagttctctcttttctccttccatgcctcacac 8857005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 389 - 551
Target Start/End: Complemental strand, 42907906 - 42907745
Alignment:
Q  389 ccatactcaaactcgtacctaatgtagaaaatcattttaataccccttttctataaataaaaatcgaaaccctaaatcatttcactcacatagtcaaagt 488  Q
    |||||| ||||||||| || |||||||||||||| |||| ||| | |||| |||||||| |||   |||||||||||||||||||||| | ||| | |||    
T  42907906 ccatacccaaactcgtcccgaatgtagaaaatcaatttactactc-ttttatataaatagaaactcaaaccctaaatcatttcactcatacagttagagt 42907808  T
Q  489 ctcgttcatttagttgacactctcttatcaaagttctcttttatctccttccatatctcacac 551  Q
    ||   || || || |||||| | ||||||| |||||| | || ||||||||||||||||||||    
T  42907807 cttagtctttcagatgacacacacttatcatagttctatcttttctccttccatatctcacac 42907745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 393 - 474
Target Start/End: Complemental strand, 36306801 - 36306720
Alignment:
Q  393 actcaaactcgtacctaatgtagaaaatcattttaataccccttttctataaataaaaatcgaaaccctaaatcatttcact 474  Q
    |||||||| ||| || |||||||||||||| |||| |||||||||| |||||||| ||||||||| | ||||||||||||||    
T  36306801 actcaaacccgtcccgaatgtagaaaatcaatttattaccccttttatataaatagaaatcgaaatcataaatcatttcact 36306720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 412 - 551
Target Start/End: Original strand, 9929265 - 9929404
Alignment:
Q  412 gtagaaaatcattttaataccccttttctataaataaaaatcgaaaccctaaatcatttcactcacatagtcaaagtctcgttcatttagttgacactct 511  Q
    ||||||||||| |||| |||| |||   |||||||| |||  ||||| |||||| |||||||||||| ||||| ||||||| || ||||| | ||| ||     
T  9929265 gtagaaaatcaatttattacctcttccatataaatataaactgaaactctaaataatttcactcacacagtcagagtctcggtcttttagataacaatca 9929364  T
Q  512 cttatcaaagttctcttttatctccttccatatctcacac 551  Q
    ||||||| |||||||| ||||||| ||| || ||||||||    
T  9929365 cttatcatagttctctcttatctcattcaatctctcacac 9929404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 161 - 259
Target Start/End: Original strand, 13885917 - 13886015
Alignment:
Q  161 aagtactttttgaatgattaagatgtgtgacacccttgcatgtttaattaattattgtattttaattagaaactaataagtggggtttagggtgttaca 259  Q
    ||||||||||  | |||| |||||||||||||||||| | |  || | |||||||| |||||| |||||||| ||||| ||||||||||||||||||||    
T  13885917 aagtacttttgaattgatgaagatgtgtgacacccttacgtactttaataattattatatttttattagaaaataatatgtggggtttagggtgttaca 13886015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 409 - 551
Target Start/End: Original strand, 17113098 - 17113239
Alignment:
Q  409 aatgtagaaaatcattttaataccccttttctataaataaaaatcgaaaccctaaatcatttcactcacatagtcaaagtctcgttcatttagttgacac 508  Q
    |||||||||||||| |||| ||| | |||  |||||||||||| | ||| | ||||||||||||||| || ||||| ||||||  || || || ||||||    
T  17113098 aatgtagaaaatcaatttattactc-tttcatataaataaaaacccaaatcttaaatcatttcactcccaaagtcagagtctcagtctttcagatgacac 17113196  T
Q  509 tctcttatcaaagttctcttttatctccttccatatctcacac 551  Q
    || ||||||| |||| ||| || | ||||||||||||||||||    
T  17113197 tcacttatcatagttatctcttttttccttccatatctcacac 17113239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 429 - 491
Target Start/End: Original strand, 53906794 - 53906856
Alignment:
Q  429 taccccttttctataaataaaaatcgaaaccctaaatcatttcactcacatagtcaaagtctc 491  Q
    |||||||||| |||||||| ||||||||||| ||| | |||||||||||||||||||||||||    
T  53906794 taccccttttatataaatagaaatcgaaaccttaagttatttcactcacatagtcaaagtctc 53906856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 261 - 326
Target Start/End: Original strand, 5902562 - 5902627
Alignment:
Q  261 tacccacccgaaccaaactcaattcgacaggttttgcccgctttgactgggtttggttatgggttt 326  Q
    ||||| |||||||||||||||||| ||| |||||| |||| ||||||||||||||| |||||||||    
T  5902562 tacccgcccgaaccaaactcaatttgacgggttttccccgttttgactgggtttgggtatgggttt 5902627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 409 - 557
Target Start/End: Original strand, 33516167 - 33516316
Alignment:
Q  409 aatgtagaaaatcattttaataccccttttctataaataaaaatcgaaaccctaaatcatttcactcaca-tagtcaaagtctcgttcatttagttgaca 507  Q
    |||||| ||||||| | || |||||||||| ||||||||||||   ||||||||||||||||||||||||   || | ||||| | || || || |||||    
T  33516167 aatgtaaaaaatcaatgtattaccccttttatataaataaaaactcaaaccctaaatcatttcactcacacccgttagagtcttggtctttcagatgaca 33516266  T
Q  508 ctctcttatcaaagttctcttttatctccttccatatctcacacgctagg 557  Q
    ||| ||||||| | |||||| || |||||||| |||| |||||| |||||    
T  33516267 ctcacttatcataattctctcttttctccttctatatatcacactctagg 33516316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 259 - 343
Target Start/End: Original strand, 19882996 - 19883080
Alignment:
Q  259 aatacccacccgaaccaaactcaattcgacaggttttgcccgctttgactgggtttggttatgggtttgagtttttcccgatttt 343  Q
    ||||||| |||||||||||| ||||| ||| |||||| |||||||||| ||||||||  |||| ||||| ||||| |||||||||    
T  19882996 aatacccgcccgaaccaaacccaatttgacgggtttttcccgctttgattgggtttgagtatgagtttgggttttccccgatttt 19883080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 382 - 550
Target Start/End: Original strand, 25298901 - 25299068
Alignment:
Q  382 cccgaatccatactcaaactcgtacctaatgtagaaaatcattttaataccccttttctataaataaaaatcgaaaccctaaatcatttcactcacatag 481  Q
    |||||| |||||| ||||| |||||| ||||| |||||||| ||||  ||||||||| |||||||| || || |||| ||||||||||||||||| |  |    
T  25298901 cccgaacccatacccaaacccgtaccaaatgttgaaaatcaatttatcaccccttttttataaatagaactc-aaactctaaatcatttcactcataacg 25298999  T
Q  482 tcaaagtctcgttcatttagttgacactctcttatcaaagttctcttttatctccttccatatctcaca 550  Q
    | | |||| |  || || ||||||||||   |||||| | || ||| || |||||||||||||||||||    
T  25299000 ttagagtcgcaatctttcagttgacacttatttatcataattttctcttttctccttccatatctcaca 25299068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 455 - 550
Target Start/End: Original strand, 7334324 - 7334419
Alignment:
Q  455 aaaccctaaatcatttcactcacatagtcaaagtctcgttcatttagttgacactctcttatcaaagttctcttttatctccttccatatctcaca 550  Q
    |||| ||||||||||||||||||| ||| ||||||||  || ||||||||||| |   |||||| | |||||| || |||||||||||||||||||    
T  7334324 aaactctaaatcatttcactcacacagttaaagtctcagtcttttagttgacatttatttatcataattctctcttttctccttccatatctcaca 7334419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 416 - 551
Target Start/End: Complemental strand, 30034667 - 30034532
Alignment:
Q  416 aaaatcattttaataccccttttctataaataaaaatcgaaaccctaaatcatttcactcacatagtcaaagtctcgttcatttagttgacactctctta 515  Q
    ||||||| |||| |||| | ||| |||||||| ||| | |||||||||||||||||||||| | ||| | |||| |  || || |  |||||||| ||||    
T  30034667 aaaatcaatttactacctcatttatataaatagaaacccaaaccctaaatcatttcactcataaagtgagagtcacaatctttcaagtgacactcgctta 30034568  T
Q  516 tcaaagttctcttttatctccttccatatctcacac 551  Q
    ||| |||| ||| || ||||||||||||||||||||    
T  30034567 tcatagttttctcttttctccttccatatctcacac 30034532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 261 - 370
Target Start/End: Original strand, 6382214 - 6382324
Alignment:
Q  261 tacccacccgaaccaaactcaattcgacaggttttgcccgctttgactgggtttggttatgggtttgagtttttcccgattttcaaa-acgagtatggga 359  Q
    ||||| |||||| ||||| ||||| ||| |||||| |||||||||||||||||||| ||||||| || |||||  ||||| |  ||| ||| ||||||||    
T  6382214 tacccgcccgaatcaaacccaatttgacgggttttccccgctttgactgggtttgggtatgggtatgggttttctccgatctcaaaacacgggtatggga 6382313  T
Q  360 caggtaacggg 370  Q
    | |||||||||    
T  6382314 cgggtaacggg 6382324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 261 - 370
Target Start/End: Complemental strand, 7609123 - 7609013
Alignment:
Q  261 tacccacccgaaccaaactcaattcgacaggttttgcccgctttgactgggtttggttatgggtttgagtttttcccgattttcaaa-acgagtatggga 359  Q
    ||||||||||||| |||| ||||| ||| |||||| |||| ||||||||| ||||| ||||||| || ||||| |||||| |  ||| ||| ||||||||    
T  7609123 tacccacccgaactaaacccaatttgacgggttttccccgttttgactggatttgggtatgggtatgggttttccccgatctcgaaacacgggtatggga 7609024  T
Q  360 caggtaacggg 370  Q
    | |||||||||    
T  7609023 cgggtaacggg 7609013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 261 - 370
Target Start/End: Complemental strand, 11028226 - 11028116
Alignment:
Q  261 tacccacccgaaccaaactcaattcgacaggttttgcccgctttgactgggtttggttatgggtttgagtttttcccgattttcaaa-acgagtatggga 359  Q
    |||||||||||||||||| ||||| ||| ||||||  ||| ||||||||| ||||| ||||||| || ||||| |||||| |  ||| ||| ||||||||    
T  11028226 tacccacccgaaccaaacccaatttgacgggttttctccgttttgactggatttgggtatgggtatgggttttccccgatctcaaaacacgggtatggga 11028127  T
Q  360 caggtaacggg 370  Q
    | |||||||||    
T  11028126 cgggtaacggg 11028116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 261 - 370
Target Start/End: Original strand, 15987204 - 15987314
Alignment:
Q  261 tacccacccgaaccaaactcaattcgacaggttttgcccgctttgactgggtttggttatgggtttgagtttttcccgattttcaaa-acgagtatggga 359  Q
    |||||||||||||||||| ||||| ||| ||||||  ||  ||||| ||||||||| ||||||| |||||||| || |||||| ||| ||| ||||||||    
T  15987204 tacccacccgaaccaaacccaatttgacgggttttctccattttgattgggtttgggtatgggtatgagttttcccagattttaaaacacgggtatggga 15987303  T
Q  360 caggtaacggg 370  Q
      |||||||||    
T  15987304 tgggtaacggg 15987314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 99 - 259
Target Start/End: Complemental strand, 11149821 - 11149661
Alignment:
Q  99 atgtgaaaagttactttgatgttttgagaacttttcgacaacgacgtttttaatattaaacgaagtactttttgaatgattaagatgtgtgacacccttg 198  Q
    ||||||||| | |||||||||||  |||||||||||  |  ||| ||||||||| ||||| |||||| ||||  | |||  |||||||||||||||||||    
T  11149821 atgtgaaaaatcactttgatgttacgagaacttttccgctgcgatgtttttaat-ttaaatgaagtattttt--attgaaaaagatgtgtgacacccttg 11149725  T
Q  199 catgtttaattaattat--tgtattttaattagaaactaataagtggg-gtttagggtgttaca 259  Q
    |||||||||||  || |  |||||||| |||| ||| ||||| |||||  ||||||||||||||    
T  11149724 catgtttaatttttttttatgtatttttattataaaataatatgtgggtttttagggtgttaca 11149661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 274 - 551
Target Start/End: Original strand, 12075587 - 12075868
Alignment:
Q  274 caaactcaattcgacaggttttgcccgctttgactgggtttggttatgggtttgagtttttcccgattttcaaa-acgagtatgggacaggtaacgggga 372  Q
    ||||||||||| ||| |||||| || |||||||  |||||||| |||| |||||||||||| || ||||  ||| ||| ||| | |||||||||  ||||    
T  12075587 caaactcaatttgacgggtttttcc-gctttgatcgggtttgggtatgagtttgagttttttccaatttcaaaacacgggtacgtgacaggtaataggga 12075685  T
Q  373 ----tgtactcatcccgaatccatactcaaactcgtacctaatgtagaaaatcattttaataccccttttctataaataaaaatcgaaaccctaaatcat 468  Q
        ||||| || ||| ||  | ||||||||||||| |  |||||||||||||| |||| ||||| |||| |||||||| |||   |||| || ||||||    
T  12075686 gatatgtacccaccccaaactcgtactcaaactcgtccggaatgtagaaaatcaatttattacccattttatataaatagaaactaaaactctgaatcat 12075785  T
Q  469 ttcactcacatagtcaaagtctcgttcatttagttgacactctcttatcaaagttctcttttatctccttccatatctcacac 551  Q
    ||||| |||| ||| | ||| ||  |  ||||| |||||  | ||||| | |||||||| || |||||||| |||||||||||    
T  12075786 ttcacccacacagttagagtttcagttttttagatgacatccacttattatagttctctcttttctccttctatatctcacac 12075868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 261 - 478
Target Start/End: Complemental strand, 25941291 - 25941069
Alignment:
Q  261 tacccacccgaaccaaactcaattcgacaggttttgcccgctttgactgggtttggttatgggtttgagtttttcccgattttcaaa-acgagtatggga 359  Q
    |||||| | |||| ||||||||||  |  |||||| ||| |||||| | |||||||  ||| ||||| ||||||||||||||  ||| ||| ||| ||||    
T  25941291 tacccatctgaactaaactcaatttaatgggttttccccactttgatttggtttgggcatgtgtttgggtttttcccgatttcaaaacacgggtacggga 25941192  T
Q  360 caggtaacggg--gat--gtactcatcccgaatccatactcaaactcgtacctaatgtagaaaatcattttaataccccttttctataaataaaaatcga 455  Q
    |||||||||||  |||  |||| || |||||| |||||| |||||  ||  |  ||||||||||||| ||||  ||||||||| |||||||| ||| | |    
T  25941191 caggtaacgggaagataggtacccaccccgaacccatacccaaacatgtctcggatgtagaaaatcaatttataaccccttttatataaatagaaaccca 25941092  T
Q  456 aaccctaaatcatttcactcaca 478  Q
    |  ||||||||| ||||||||||    
T  25941091 aggcctaaatcaattcactcaca 25941069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 267 - 326
Target Start/End: Original strand, 50375868 - 50375927
Alignment:
Q  267 cccgaaccaaactcaattcgacaggttttgcccgctttgactgggtttggttatgggttt 326  Q
    |||||||||||||||||||||| | |||| |||||||||| |||||||||  ||||||||    
T  50375868 cccgaaccaaactcaattcgacggatttttcccgctttgattgggtttgggcatgggttt 50375927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 261 - 419
Target Start/End: Original strand, 11122811 - 11122974
Alignment:
Q  261 tacccacccgaaccaaactcaattcgacaggttttgcccgctttgactgggtttggttatgggtttgagtttttcccgattttcaaa-acgagtatggga 359  Q
    ||||| |||||||||||||||||| ||| | ||||  ||| |||||||| |||||| ||||||| || |||||  ||||| |  ||| ||| ||||||||    
T  11122811 tacccgcccgaaccaaactcaatttgacggattttttccgttttgactgagtttgggtatgggtatgggttttctccgatctcgaaacacgggtatggga 11122910  T
Q  360 caggtaacggggat----gtactcatcccgaatccatactcaaactcgtacctaatgtagaaaa 419  Q
    | ||||||||| ||    |||| || |||||| |||||||||||| ||| || |||||| ||||    
T  11122911 cgggtaacgggtatataggtacccaccccgaacccatactcaaacccgtcccaaatgtaaaaaa 11122974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 181 - 259
Target Start/End: Complemental strand, 18874288 - 18874211
Alignment:
Q  181 agatgtgtgacacccttgcatgtttaattaattattgtattttaattagaaactaataagtggggtttagggtgttaca 259  Q
    |||||||||||||||||||||| ||||||||||||| | |||| | |||||| ||| | |||||||||| |||| ||||    
T  18874288 agatgtgtgacacccttgcatgcttaattaattattatttttttactagaaaataa-atgtggggtttaaggtgataca 18874211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 298 - 371
Target Start/End: Complemental strand, 43309599 - 43309525
Alignment:
Q  298 ccgctttgactgggtttggttatgggtttgagtttttcccgattttcaaa-acgagtatgggacaggtaacgggg 371  Q
    ||||||||||||||||||  |||| ||||| ||||||||||||||  ||| ||| ||||||||| ||||||||||    
T  43309599 ccgctttgactgggtttgagtatgagtttgggtttttcccgatttcaaaacacgggtatgggacgggtaacgggg 43309525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 261 - 427
Target Start/End: Original strand, 47550295 - 47550466
Alignment:
Q  261 tacccacccgaaccaaactcaattcgacaggttttgcccgctttgactgggtttggttatgggtttgagtttttcccgattttcaaa-acgagtatggga 359  Q
    ||||| |||||||||||||||||| | | | |||| |||  ||||||||||||||| ||| ||| |||||||| |||||| |  ||| ||| ||||||||    
T  47550295 tacccgcccgaaccaaactcaatttggcggattttccccattttgactgggtttgggtataggtatgagttttccccgatctcaaaacacgggtatggga 47550394  T
Q  360 caggtaacggggat----gtactcatcccgaatccatactcaaactcgtacctaatgtagaaaatcatttta 427  Q
    | |||||| || ||    |||| || |||||| |||||| ||||| ||| || |||||| ||||| ||||||    
T  47550395 cgggtaacaggtatataggtacccaccccgaacccatacccaaacccgtcccaaatgtaaaaaattatttta 47550466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #35
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 267 - 340
Target Start/End: Original strand, 31918506 - 31918579
Alignment:
Q  267 cccgaaccaaactcaattcgacaggttttgcccgctttgactgggtttggttatgggtttgagtttttcccgat 340  Q
    |||||||||||| ||||| ||| |||||| |||| ||||||||||||||| |||| || || ||||| ||||||    
T  31918506 cccgaaccaaacccaatttgacgggttttccccgttttgactgggtttgggtatgagtatgggttttccccgat 31918579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #36
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 261 - 373
Target Start/End: Original strand, 33615271 - 33615384
Alignment:
Q  261 tacccacccgaaccaaactcaattcgacaggttttgcccgctttgactgggtttggttatgggtttgagtttttcccgattt-tcaaaacgagtatggga 359  Q
    |||||| ||||||||||| | ||| ||||| |||| || |||| || ||||||||| ||||||||| |||||| | ||||||   |||||  ||||||||    
T  33615271 tacccatccgaaccaaacccgatttgacagattttacctgcttagattgggtttgggtatgggtttaagttttcctcgatttaataaaacaggtatggga 33615370  T
Q  360 caggtaacggggat 373  Q
    | ||||||||||||    
T  33615371 cgggtaacggggat 33615384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #37
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 409 - 470
Target Start/End: Original strand, 40420680 - 40420741
Alignment:
Q  409 aatgtagaaaatcattttaataccccttttctataaataaaaatcgaaaccctaaatcattt 470  Q
    |||||||||||||| |||| |||||||||| |||||||| ||| | |||||| |||||||||    
T  40420680 aatgtagaaaatcactttattaccccttttatataaatagaaaccaaaaccccaaatcattt 40420741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #38
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 261 - 370
Target Start/End: Complemental strand, 26564984 - 26564874
Alignment:
Q  261 tacccacccgaaccaaactcaattcgacaggttttgcccgctttgactgggtttggttatgggtttgagtttttcccgattttcaaaa--cgagtatggg 358  Q
    |||||||||||||||||  ||||| ||| | ||||   || ||||||||||||||| |||| ||||||| ||| ||||| ||||||||  || |||||||    
T  26564984 tacccacccgaaccaaatccaatttgacggattttcttcgttttgactgggtttgggtatgagtttgagctttccccga-tttcaaaacgcgggtatggg 26564886  T
Q  359 acaggtaacggg 370  Q
    || |||||||||    
T  26564885 acgggtaacggg 26564874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #39
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 267 - 370
Target Start/End: Complemental strand, 44317682 - 44317578
Alignment:
Q  267 cccgaaccaaactcaattcgacaggttttgcccgctttgactgggtttggttatgggtttgagtttttcccgattttcaaa-acgagtatgggacaggta 365  Q
    |||||| ||||| ||||| ||| | |||| |||| ||||||||||||||| ||||||| || ||||| |||||| |  ||| ||| ||||||||| ||||    
T  44317682 cccgaatcaaacccaatttgacggattttccccgttttgactgggtttgggtatgggtatgggttttccccgatctcgaaacacgggtatgggacgggta 44317583  T
Q  366 acggg 370  Q
    |||||    
T  44317582 acggg 44317578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #40
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 270 - 349
Target Start/End: Original strand, 7334148 - 7334226
Alignment:
Q  270 gaaccaaactcaattcgacaggttttgcccgctttgactgggtttggttatgggtttgagtttttcccgattttcaaaac 349  Q
    |||||||||  |||| ||| |||||| |||||||||||||||||||| ||||| ||||  |||| ||||| |||||||||    
T  7334148 gaaccaaacctaatttgacgggtttttcccgctttgactgggtttgggtatggatttggattttccccga-tttcaaaac 7334226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #41
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 460 - 551
Target Start/End: Original strand, 25265292 - 25265383
Alignment:
Q  460 ctaaatcatttcactcacatagtcaaagtctcgttcatttagttgacactctcttatcaaagttctcttttatctccttccatatctcacac 551  Q
    ||||||||||| ||||||| | ||| ||||||  |  || || ||||| || ||||||| |||||||| || ||||||||||||||||||||    
T  25265292 ctaaatcattttactcacacaatcagagtctcaatttttcagatgacagtcgcttatcatagttctctcttttctccttccatatctcacac 25265383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #42
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 461 - 551
Target Start/End: Complemental strand, 37926507 - 37926419
Alignment:
Q  461 taaatcatttcactcacatagtcaaagtctcgttcatttagttgacactctcttatcaaagttctcttttatctccttccatatctcacac 551  Q
    |||||||||| ||||||| ||| ||||||||  || || |  ||||| || ||||||| |||||||| || ||||||||||||||||||||    
T  37926507 taaatcatttaactcacacagttaaagtctcagtctttga--tgacagtcacttatcatagttctctattttctccttccatatctcacac 37926419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #43
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 261 - 324
Target Start/End: Complemental strand, 43893380 - 43893317
Alignment:
Q  261 tacccacccgaaccaaactcaattcgacaggttttgcccgctttgactgggtttggttatgggt 324  Q
    ||||| ||||| |||||| ||||| ||| |||||| |||| ||||||||||||||| |||||||    
T  43893380 tacccgcccgagccaaacccaatttgacgggttttccccgttttgactgggtttgggtatgggt 43893317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #44
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 261 - 322
Target Start/End: Original strand, 19548880 - 19548940
Alignment:
Q  261 tacccacccgaaccaaactcaattcgacaggttttgcccgctttgactgggtttggttatgg 322  Q
    |||| ||||||||||||| ||||| ||| |||||| ||| |||||||||||||||| |||||    
T  19548880 tacctacccgaaccaaacccaatttgac-ggttttcccctctttgactgggtttgggtatgg 19548940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #45
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 409 - 474
Target Start/End: Original strand, 21714070 - 21714135
Alignment:
Q  409 aatgtagaaaatcattttaataccccttttctataaataaaaatcgaaaccctaaatcatttcact 474  Q
    |||||||||||| | |||| |||| ||||| |||||||| |||   ||||||||||||||||||||    
T  21714070 aatgtagaaaattaatttattacctcttttatataaatagaaactcaaaccctaaatcatttcact 21714135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #46
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 417 - 478
Target Start/End: Complemental strand, 37384265 - 37384204
Alignment:
Q  417 aaatcattttaataccccttttctataaataaaaatcgaaaccctaaatcatttcactcaca 478  Q
    |||||| |||| || ||||||| |||||||| || |  ||||||||||||||||||||||||    
T  37384265 aaatcaatttattatcccttttatataaatagaagttcaaaccctaaatcatttcactcaca 37384204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #47
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 261 - 342
Target Start/End: Complemental strand, 42299941 - 42299860
Alignment:
Q  261 tacccacccgaaccaaactcaattcgacaggttttgcccgctttgactgggtttggttatgggtttgagtttttcccgattt 342  Q
    |||||| ||||||||||||||||| ||| ||||||  ||| |||||||| |||| | ||||||| ||  |||| ||||||||    
T  42299941 tacccatccgaaccaaactcaatttgacgggttttttccggtttgactgagtttaggtatgggtatggattttccccgattt 42299860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #48
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 267 - 316
Target Start/End: Original strand, 53906286 - 53906335
Alignment:
Q  267 cccgaaccaaactcaattcgacaggttttgcccgctttgactgggtttgg 316  Q
    |||||||||||| ||||| ||| |||||| |||| |||||||||||||||    
T  53906286 cccgaaccaaacccaatttgacgggtttttcccgttttgactgggtttgg 53906335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #49
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 261 - 333
Target Start/End: Complemental strand, 21424014 - 21423942
Alignment:
Q  261 tacccacccgaaccaaactcaattcgacaggttttgcccgctttgactgggtttggttatgggtttgagtttt 333  Q
    ||||| |||||||||||  ||||| ||| | |||| |||| ||||||||||||||| ||||||| || |||||    
T  21424014 tacccgcccgaaccaaatccaatttgacggatttttcccgttttgactgggtttgggtatgggtatgggtttt 21423942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #50
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 412 - 484
Target Start/End: Complemental strand, 39086152 - 39086081
Alignment:
Q  412 gtagaaaatcattttaataccccttttctataaataaaaatcgaaaccctaaatcatttcactcacatagtca 484  Q
    ||||||||||| |||| ||||  |||| |||||||| |||   |||||||||||||||||||||||| |||||    
T  39086152 gtagaaaatcaatttactacct-ttttatataaatagaaacttaaaccctaaatcatttcactcacacagtca 39086081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 66; Significance: 8e-29; HSPs: 43)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 66; E-Value: 8e-29
Query Start/End: Original strand, 414 - 551
Target Start/End: Original strand, 11472811 - 11472948
Alignment:
Q  414 agaaaatcattttaataccccttttctataaataaaaatcgaaaccctaaatcatttcactcacatagtcaaagtctcgttcatttagttgacactctct 513  Q
    ||||||||| |||| ||  |||||| |||||||| ||| | ||||||||||||||||||||||| |||| | ||||||  || ||||| |||||||| ||    
T  11472811 agaaaatcaatttattataccttttatataaatagaaaccaaaaccctaaatcatttcactcacgtagttagagtctcagtcttttagatgacactcact 11472910  T
Q  514 tatcaaagttctcttttatctccttccatatctcacac 551  Q
    ||||| |||||||| |||||||||||||||||||||||    
T  11472911 tatcatagttctctcttatctccttccatatctcacac 11472948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 180 - 259
Target Start/End: Original strand, 11510535 - 11510614
Alignment:
Q  180 aagatgtgtgacacccttgcatgtttaattaattattgtattttaattagaaactaataagtggggtttagggtgttaca 259  Q
    ||||||||||||||||||| |||||||||||||||||||| ||| |||||||| ||||| ||||||||||||||||||||    
T  11510535 aagatgtgtgacacccttgtatgtttaattaattattgtacttttattagaaaataatatgtggggtttagggtgttaca 11510614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 261 - 551
Target Start/End: Complemental strand, 3157234 - 3156940
Alignment:
Q  261 tacccacccgaaccaaactcaattcgacaggttttgcccgctttgactgggtttggttatgggtttgagtttttcccgattttcaaa-acgagtatggga 359  Q
    ||||| ||||||||||||  |||| | | |||||| |||||||||||| ||||||| |||||||||  ||||| ||||||||  ||| | | ||||||||    
T  3157234 tacccgcccgaaccaaacctaatttgtc-ggttttccccgctttgacttggtttgggtatgggtttaggttttccccgatttcaaaatatgggtatggga 3157136  T
Q  360 caggtaacggggat----gtactcatcccgaatccatactcaaactcgtacctaatgtagaaaatcattttaataccccttttctataaataaaaatcga 455  Q
    | | ||||||||||    |||| ||  ||||| | |||| ||||| ||| || ||  |||||||||| |||| |||||||  | |||||||| ||| | |    
T  3157135 cggataacggggatataggtacccacaccgaacctatacccaaacccgtcccaaacatagaaaatcaatttattacccctactatataaatagaaaccca 3157036  T
Q  456 aaccctaaatcatttcactcacatagtcaaagtctcgttcatttagttgacactctcttatcaaagttctcttttatctccttccatatctcacac 551  Q
    || |||||||| |||||||| | |||||| ||||| | || ||||| |||||||| ||||| | |||||||| || | ||||||||||| ||||||    
T  3157035 aatcctaaatcctttcactcgcgtagtcagagtcttggtcttttagatgacactcacttattatagttctctcttttttccttccatatgtcacac 3156940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 409 - 550
Target Start/End: Complemental strand, 31345525 - 31345384
Alignment:
Q  409 aatgtagaaaatcattttaataccccttttctataaataaaaatcgaaaccctaaatcatttcactcacatagtcaaagtctcgttcatttagttgacac 508  Q
    |||||| ||||||| |||| ||||  |||| |||||||| |||   |||| ||| ||||||||||||||| | ||||||||||  |||||||| ||||||    
T  31345525 aatgtaaaaaatcaatttactaccatttttatataaatagaaactcaaactctatatcatttcactcacacaatcaaagtctcagtcatttagatgacac 31345426  T
Q  509 tctcttatcaaagttctcttttatctccttccatatctcaca 550  Q
    || ||||||| | |||||| || ||| |||||||||||||||    
T  31345425 tcacttatcataattctctcttttcttcttccatatctcaca 31345384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 261 - 370
Target Start/End: Complemental strand, 35074622 - 35074512
Alignment:
Q  261 tacccacccgaaccaaactcaattcgacaggttttgcccgctttgactgggtttggttatgggtttgagtttttcccgattttcaaa-acgagtatggga 359  Q
    ||||| |||||||||||| ||||| ||| |||||| |||| ||||||||||||||| ||||||| || ||||| |||||| || ||| ||| ||||||||    
T  35074622 tacccgcccgaaccaaacccaattagacgggttttccccgttttgactgggtttgggtatgggtatgggttttccccgatcttaaaacacgggtatggga 35074523  T
Q  360 caggtaacggg 370  Q
    | |||||||||    
T  35074522 cgggtaacggg 35074512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 260 - 333
Target Start/End: Complemental strand, 37218158 - 37218085
Alignment:
Q  260 atacccacccgaaccaaactcaattcgacaggttttgcccgctttgactgggtttggttatgggtttgagtttt 333  Q
    ||||||||||||||||||||||||| ||  |||||| |||| ||||||||||||||| |||| |||||||||||    
T  37218158 atacccacccgaaccaaactcaatttgatgggttttccccgttttgactgggtttgggtatgagtttgagtttt 37218085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 261 - 340
Target Start/End: Complemental strand, 16866321 - 16866242
Alignment:
Q  261 tacccacccgaaccaaactcaattcgacaggttttgcccgctttgactgggtttggttatgggtttgagtttttcccgat 340  Q
    ||||| |||||||||||| ||||| ||| |||||| |||| ||||||||||||||||||||||| || ||||| ||||||    
T  16866321 tacccgcccgaaccaaacccaatttgacgggttttccccgttttgactgggtttggttatgggtatgggttttccccgat 16866242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 261 - 370
Target Start/End: Complemental strand, 10072618 - 10072508
Alignment:
Q  261 tacccacccgaaccaaactcaattcgacaggttttgcccgctttgactgggtttggttatgggtttgagtttttcccgattttcaaa-acgagtatggga 359  Q
    ||||| |||||||||||| ||||| ||| |||||| |||| ||||||||||||||| ||||||| || ||||| ||||||||  ||| ||| |||||| |    
T  10072618 tacccgcccgaaccaaacccaatttgacgggttttccccgttttgactgggtttgggtatgggtatgggttttccccgatttcaaaacacgggtatggaa 10072519  T
Q  360 caggtaacggg 370  Q
    | |||||||||    
T  10072518 cgggtaacggg 10072508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 384 - 489
Target Start/End: Original strand, 23475332 - 23475438
Alignment:
Q  384 cgaatccatactcaaactcgtacctaatgtagaaaa-tcattttaataccccttttctataaataaaaatcgaaaccctaaatcatttcactcacatagt 482  Q
    |||| |||||| ||||| ||| || |||||| |||| ||| |||| ||||| |||| |||||||||||| | |||| |||||||||||||||||||||||    
T  23475332 cgaacccatacccaaacccgtcccgaatgtaaaaaaatcaatttactacccgttttgtataaataaaaacccaaactctaaatcatttcactcacatagt 23475431  T
Q  483 caaagtc 489  Q
    || ||||    
T  23475432 cagagtc 23475438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 261 - 342
Target Start/End: Complemental strand, 37579413 - 37579332
Alignment:
Q  261 tacccacccgaaccaaactcaattcgacaggttttgcccgctttgactgggtttggttatgggtttgagtttttcccgattt 342  Q
    ||||| |||||||||||| ||||| ||| |||||| |||| ||||||| ||||||| ||||||||||  |||||||||||||    
T  37579413 tacccgcccgaaccaaacccaattagacgggttttccccgttttgactaggtttgggtatgggtttggatttttcccgattt 37579332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 267 - 370
Target Start/End: Complemental strand, 17885611 - 17885507
Alignment:
Q  267 cccgaaccaaactcaattcgacaggttttgcccgctttgactgggtttggttatgggtttgagtttttcccgattttcaaa-acgagtatgggacaggta 365  Q
    |||||||||||| ||||| ||| |||||| |||| ||||||||||||||  ||||||| || ||||| ||||||||| ||| | | ||||||||| ||||    
T  17885611 cccgaaccaaacccaatttgacgggttttccccgttttgactgggtttgaatatgggtatgggttttccccgattttaaaacatgggtatgggacgggta 17885512  T
Q  366 acggg 370  Q
    |||||    
T  17885511 acggg 17885507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 267 - 370
Target Start/End: Complemental strand, 39317141 - 39317037
Alignment:
Q  267 cccgaaccaaactcaattcgacaggttttgcccgctttgactgggtttggttatgggtttgagtttttcccgattttcaaa-acgagtatgggacaggta 365  Q
    |||||||||||||||||| ||| |||||| |||| ||||||||||||||| |||| || |||||||| | ||||||  ||| ||| ||||||||| ||||    
T  39317141 cccgaaccaaactcaatttgacgggttttccccgttttgactgggtttggatatgagtatgagttttcctcgatttcaaaacacgggtatgggacgggta 39317042  T
Q  366 acggg 370  Q
     ||||    
T  39317041 gcggg 39317037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 261 - 340
Target Start/End: Complemental strand, 7780160 - 7780081
Alignment:
Q  261 tacccacccgaaccaaactcaattcgacaggttttgcccgctttgactgggtttggttatgggtttgagtttttcccgat 340  Q
    |||||| ||||||||||||||||| ||| | |||| |||| ||||||||||||||| ||||||| || ||||| ||||||    
T  7780160 tacccatccgaaccaaactcaatttgacggattttccccgttttgactgggtttgggtatgggtatgggttttccccgat 7780081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 409 - 549
Target Start/End: Complemental strand, 29292701 - 29292551
Alignment:
Q  409 aatgtagaaaatcattttaataccccttttctataaataaaaatcgaaaccctaaat----------catttcactcacatagtcaaagtctcgttcatt 498  Q
    |||||||||||||| |||| |||||||||| |||||| | ||||| |||||||||||           |||||||| ||||||||| ||||||| || ||    
T  29292701 aatgtagaaaatcaatttactaccccttttatataaagagaaatccaaaccctaaattatttcactaaatttcactaacatagtcagagtctcggtcttt 29292602  T
Q  499 tagttgacactctcttatcaaagttctcttttatctccttccatatctcac 549  Q
    ||| ||||| || ||||||| || |||||||| ||||||| || |||||||    
T  29292601 tagatgacaatcacttatcatagctctcttttttctcctttcaaatctcac 29292551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 168 - 262
Target Start/End: Complemental strand, 34705102 - 34705007
Alignment:
Q  168 ttttgaatg-attaagatgtgtgacacccttgcatgtttaattaattattgtattttaattagaaactaataagtggggtttagggtgttacaata 262  Q
    ||||||||| || |||||||||||||||||||| || || | |||||||| |||||  |||||||| | ||| |||||||||||||| ||||||||    
T  34705102 ttttgaatggatgaagatgtgtgacacccttgcgtgctttaataattattatatttatattagaaaatgatatgtggggtttagggttttacaata 34705007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 267 - 342
Target Start/End: Original strand, 44658414 - 44658489
Alignment:
Q  267 cccgaaccaaactcaattcgacaggttttgcccgctttgactgggtttggttatgggtttgagtttttcccgattt 342  Q
    |||||||||||  ||||| ||| |||||| | || ||||||||||||||| ||||||| |||||||||||||||||    
T  44658414 cccgaaccaaatccaatttgacgggttttcctcgttttgactgggtttgggtatgggtatgagtttttcccgattt 44658489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 268 - 370
Target Start/End: Complemental strand, 45380251 - 45380149
Alignment:
Q  268 ccgaaccaaactcaattcgacaggttttgcccgctttgactgggtttggttatgggtttgagtttttcccgattttcaaa-acgagtatgggacaggtaa 366  Q
    ||||||||||| ||||| ||| |||||| || | ||||||||||||||| ||||||| || ||||||||||||||  ||| ||| ||||||||| |||||    
T  45380251 ccgaaccaaacccaatttgac-ggttttccctgttttgactgggtttggatatgggtatgggtttttcccgatttcaaaatacgggtatgggacgggtaa 45380153  T
Q  367 cggg 370  Q
    ||||    
T  45380152 cggg 45380149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 261 - 370
Target Start/End: Complemental strand, 30650783 - 30650673
Alignment:
Q  261 tacccacccgaaccaaactcaattcgacaggttttgcccgctttgactgggtttggttatgggtttgagtttttcccgattttcaaa-acgagtatggga 359  Q
    ||||| |||||||||||| ||||| ||| |||||| |||| ||||||||||||| | ||||||| |||||||| ||| || |  ||| ||| ||||||||    
T  30650783 tacccgcccgaaccaaacccaatttgacgggttttccccgttttgactgggtttaggtatgggtatgagttttccccaatctcaaaacacgggtatggga 30650684  T
Q  360 caggtaacggg 370  Q
    | |||||||||    
T  30650683 cgggtaacggg 30650673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 384 - 491
Target Start/End: Original strand, 23533672 - 23533781
Alignment:
Q  384 cgaatccatactcaaactcgtacctaatgtagaaaa-tcattttaata-ccccttttctataaataaaaatcgaaaccctaaatcatttcactcacatag 481  Q
    |||| |||||| ||||||||| || |||||| |||| ||| |||| || |||||||| ||||| || ||| | |||| ||||||||||||||||||||||    
T  23533672 cgaacccatacccaaactcgtcccgaatgtaaaaaaatcaatttactaaccccttttgtataattagaaacccaaactctaaatcatttcactcacatag 23533771  T
Q  482 tcaaagtctc 491  Q
    ||| ||||||    
T  23533772 tcagagtctc 23533781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 261 - 342
Target Start/End: Complemental strand, 38153038 - 38152958
Alignment:
Q  261 tacccacccgaaccaaactcaattcgacaggttttgcccgctttgactgggtttggttatgggtttgagtttttcccgattt 342  Q
    ||||| |||||||||||||||||| ||| | |||| |||| ||||||||||||||| ||||||| || ||||| ||||||||    
T  38153038 tacccgcccgaaccaaactcaatttgacggatttt-cccgttttgactgggtttgggtatgggtatgggttttccccgattt 38152958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 455 - 551
Target Start/End: Original strand, 6557866 - 6557962
Alignment:
Q  455 aaaccctaaatcatttcactcacatagtcaaagtctcgttcatttagttgacactctcttatcaaagttctcttttatctccttccatatctcacac 551  Q
    |||| ||||||||||||||||||| | ||||||||||  || || || |||||||| ||| || ||||||||| |  |||||||||| |||||||||    
T  6557866 aaactctaaatcatttcactcacacaatcaaagtctcagtctttcagatgacactcacttctctaagttctctctcttctccttccacatctcacac 6557962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 384 - 491
Target Start/End: Original strand, 19440079 - 19440187
Alignment:
Q  384 cgaatccatactcaaactcgtacctaatgtagaaaa-tcattttaataccccttttctataaataaaaatcgaaaccctaaatcatttcactcacatagt 482  Q
    |||| |||||| ||||| ||| || |||||| |||| ||| ||||  ||||||||  |||||||| ||| | |||| |||||||||||||||||||||||    
T  19440079 cgaacccatacccaaacccgtcccgaatgtaaaaaaatcaatttaccacccctttggtataaatagaaacccaaactctaaatcatttcactcacatagt 19440178  T
Q  483 caaagtctc 491  Q
    || ||||||    
T  19440179 cagagtctc 19440187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 260 - 316
Target Start/End: Original strand, 23475215 - 23475271
Alignment:
Q  260 atacccacccgaaccaaactcaattcgacaggttttgcccgctttgactgggtttgg 316  Q
    |||||| | |||||||||||||||| ||| |||||| ||||||||||||||||||||    
T  23475215 ataccctctcgaaccaaactcaatttgacgggttttccccgctttgactgggtttgg 23475271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 261 - 370
Target Start/End: Original strand, 39455956 - 39456066
Alignment:
Q  261 tacccacccgaaccaaactcaattcgacaggttttgcccgctttgactgggtttggttatgggtttgagtttttcccgattttcaaaac--gagtatggg 358  Q
    ||||| |||||||||||| ||||| |||  ||||| |||| ||||||||||||||| ||||| | || ||||| ||||| |||||||||  | |||||||    
T  39455956 tacccgcccgaaccaaacccaatttgacgagttttccccgttttgactgggtttgggtatggatatgggttttccccga-tttcaaaacatgggtatggg 39456054  T
Q  359 acaggtaacggg 370  Q
    || |||||||||    
T  39456055 acgggtaacggg 39456066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 261 - 370
Target Start/End: Complemental strand, 21702811 - 21702701
Alignment:
Q  261 tacccacccgaaccaaactcaattcgacaggttttgcccgctttgactgggtttggttatgggtttgagtttttcccgattttcaaa-acgagtatggga 359  Q
    ||||| |||||||||||| ||||| ||| | |||| |||| ||||||||||||||| |||| || || ||||| |||||| |  ||| ||| ||||||||    
T  21702811 tacccgcccgaaccaaacccaatttgacggatttttcccgttttgactgggtttgggtatgagtatgggttttccccgatctcgaaacacgggtatggga 21702712  T
Q  360 caggtaacggg 370  Q
    | |||||||||    
T  21702711 cgggtaacggg 21702701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 261 - 366
Target Start/End: Original strand, 38139733 - 38139839
Alignment:
Q  261 tacccacccgaaccaaactcaattcgacaggttttgcccgctttgactgggtttggttatgggtttgagtttttcccgattttcaaa-acgagtatggga 359  Q
    ||||| |||||||||||| ||||| ||  | |||| |||| ||||||||||||||| ||||||| || ||||| ||| ||||  ||| ||||||||||||    
T  38139733 tacccgcccgaaccaaacccaatttgatggattttccccgttttgactgggtttggatatgggtatgggttttccccaatttcaaaacacgagtatggga 38139832  T
Q  360 caggtaa 366  Q
    | |||||    
T  38139833 cgggtaa 38139839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 270 - 366
Target Start/End: Complemental strand, 12980520 - 12980423
Alignment:
Q  270 gaaccaaactcaattcgacaggttttgcccgctttgactgggtttggttatgggtttgagtttttcccgattttcaaa-acgagtatgggacaggtaa 366  Q
    |||||||||||||||  || |||||| |||  ||||||||||||||| |||||||||  ||||| ||||||||  ||| ||| ||||||||| |||||    
T  12980520 gaaccaaactcaatttaacgggttttccccattttgactgggtttgggtatgggttttggttttccccgatttcaaaacacgggtatgggacgggtaa 12980423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 261 - 369
Target Start/End: Complemental strand, 17852004 - 17851897
Alignment:
Q  261 tacccacccgaaccaaactcaattcgacaggttttgcccgctttgactgggtttggttatgggtttgagtttttcccgattttcaaaacgagtatgggac 360  Q
    ||||| |||||||||||| ||||| ||  | ||||  ||| ||||||||||||||| ||||||| || ||||| |||||| || || ||| |||||||||    
T  17852004 tacccgcccgaaccaaacccaatttgatggattttctccgttttgactgggtttgggtatgggtatgggttttccccgatctt-aacacgggtatgggac 17851906  T
Q  361 aggtaacgg 369  Q
     ||||||||    
T  17851905 gggtaacgg 17851897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 267 - 370
Target Start/End: Original strand, 18125175 - 18125279
Alignment:
Q  267 cccgaaccaaactcaattcgacaggttttgcccgctttgactgggtttggttatgggtttgagtttttcccgattttcaaa-acgagtatgggacaggta 365  Q
    |||||||||||  ||||| ||| |||||| |||| ||||||||||||||  |||| || || |||||||||||| |  ||| ||| ||||||||| ||||    
T  18125175 cccgaaccaaatccaatttgacgggttttccccgttttgactgggtttgtgtatgagtatgggtttttcccgatctcgaaacacgggtatgggacgggta 18125274  T
Q  366 acggg 370  Q
    |||||    
T  18125275 acggg 18125279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #30
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 261 - 321
Target Start/End: Complemental strand, 37182426 - 37182366
Alignment:
Q  261 tacccacccgaaccaaactcaattcgacaggttttgcccgctttgactgggtttggttatg 321  Q
    ||||| |||||| ||||||||||| ||| |||||| |||| ||||||||||||||| ||||    
T  37182426 tacccgcccgaatcaaactcaatttgacgggttttccccgttttgactgggtttgggtatg 37182366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #31
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 261 - 316
Target Start/End: Complemental strand, 3920678 - 3920623
Alignment:
Q  261 tacccacccgaaccaaactcaattcgacaggttttgcccgctttgactgggtttgg 316  Q
    |||||||||||||||||| ||||| ||  |||||| |||| |||||||||||||||    
T  3920678 tacccacccgaaccaaacccaatttgatgggtttttcccgttttgactgggtttgg 3920623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #32
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 269 - 316
Target Start/End: Complemental strand, 23457203 - 23457156
Alignment:
Q  269 cgaaccaaactcaattcgacaggttttgcccgctttgactgggtttgg 316  Q
    |||||||||| ||||| ||| |||||| ||||||||||||||||||||    
T  23457203 cgaaccaaacccaatttgacgggttttccccgctttgactgggtttgg 23457156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #33
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 261 - 316
Target Start/End: Original strand, 23533557 - 23533612
Alignment:
Q  261 tacccacccgaaccaaactcaattcgacaggttttgcccgctttgactgggtttgg 316  Q
    ||||| |||||||||||| ||||| ||| |||||| |||| |||||||||||||||    
T  23533557 taccctcccgaaccaaacccaatttgacgggtttttcccgatttgactgggtttgg 23533612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #34
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 269 - 340
Target Start/End: Original strand, 45885714 - 45885785
Alignment:
Q  269 cgaaccaaactcaattcgacaggttttgcccgctttgactgggtttggttatgggtttgagtttttcccgat 340  Q
    |||||||||| |||||  || ||||||  ||| ||||||||||||||| ||||||| |||||||| ||||||    
T  45885714 cgaaccaaacccaatttaacgggttttctccgttttgactgggtttgggtatgggtatgagttttccccgat 45885785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #35
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 260 - 342
Target Start/End: Original strand, 2630514 - 2630596
Alignment:
Q  260 atacccacccgaaccaaactcaattcgacaggttttgcccgctttgactgggtttggttatgggtttgagtttttcccgattt 342  Q
    ||||| |||| |||||||| ||||| |||  ||||| |||  ||| ||||||||||| |||||||||| ||||| ||||||||    
T  2630514 atacctacccaaaccaaacccaatttgacgtgttttacccatttttactgggtttgggtatgggtttgggttttccccgattt 2630596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #36
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 99 - 260
Target Start/End: Original strand, 18149442 - 18149603
Alignment:
Q  99 atgtgaaaagttactttgatgttttgagaacttttcgacaacgacgtttttaatattaaacgaagtactttttgaatgattaagatgtgtgacacccttg 198  Q
    ||||||||| | ||||||| |||  |||||||||||  |  ||| ||||||||| ||||| |||||| ||||  | |||  |||||||||||||||||||    
T  18149442 atgtgaaaaatcactttgacgttacgagaacttttccgctgcgatgtttttaat-ttaaatgaagtattttt--attgaagaagatgtgtgacacccttg 18149538  T
Q  199 catgtttaa--ttaattattgtattttaattagaaactaataagtggg-gtttagggtgttacaa 260  Q
    ||| |||||  ||  ||| |||||||| |||| ||| ||||| |||||  |||||||||||||||    
T  18149539 catttttaattttttttaatgtatttttattataaaataatatgtgggtttttagggtgttacaa 18149603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #37
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 269 - 315
Target Start/End: Original strand, 19439971 - 19440017
Alignment:
Q  269 cgaaccaaactcaattcgacaggttttgcccgctttgactgggtttg 315  Q
    |||||||||| ||||| ||| |||||| |||||||||||||||||||    
T  19439971 cgaaccaaacccaatttgacgggttttccccgctttgactgggtttg 19440017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #38
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 424 - 550
Target Start/End: Original strand, 43550525 - 43550650
Alignment:
Q  424 tttaataccccttttctataaataaaaatcgaaaccctaaatcatttcactcacatagtcaaagtctcgttcatttagttgacactctcttatcaaagtt 523  Q
    |||| |||||||| | |||||||| ||| | |||||||||||||||||||||| || |||| ||||||  || || | || |||||   |||||| | ||    
T  43550525 tttattaccccttctatataaatagaaacccaaaccctaaatcatttcactcaaat-gtcagagtctcagtctttcaattaacacttatttatcacattt 43550623  T
Q  524 ctcttttatctccttccatatctcaca 550  Q
    || | || |||||||||||||||||||    
T  43550624 ctttcttttctccttccatatctcaca 43550650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #39
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 272 - 333
Target Start/End: Complemental strand, 4101683 - 4101622
Alignment:
Q  272 accaaactcaattcgacaggttttgcccgctttgactgggtttggttatgggtttgagtttt 333  Q
    ||||||||||||| ||  |||||| |||||||||||| ||||||| || ||||||| |||||    
T  4101683 accaaactcaatttgatgggtttttcccgctttgactaggtttggataagggtttgggtttt 4101622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #40
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 261 - 326
Target Start/End: Original strand, 27850273 - 27850338
Alignment:
Q  261 tacccacccgaaccaaactcaattcgacaggttttgcccgctttgactgggtttggttatgggttt 326  Q
    ||||| |||||||||||| ||||| ||| | |||| |||| ||||| ||||||||| |||||||||    
T  27850273 tacccgcccgaaccaaacccaatttgacggtttttccccgttttgattgggtttgggtatgggttt 27850338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #41
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 268 - 316
Target Start/End: Original strand, 18825814 - 18825862
Alignment:
Q  268 ccgaaccaaactcaattcgacaggttttgcccgctttgactgggtttgg 316  Q
    ||||||||||| ||||| ||| |||||| |||| |||||||||||||||    
T  18825814 ccgaaccaaacccaatttgacgggttttccccgttttgactgggtttgg 18825862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #42
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 269 - 333
Target Start/End: Complemental strand, 25905772 - 25905708
Alignment:
Q  269 cgaaccaaactcaattcgacaggttttgcccgctttgactgggtttggttatgggtttgagtttt 333  Q
    ||||| |||| ||||| |||||||||| |||  ||||||||||||||| ||||||| || |||||    
T  25905772 cgaactaaacccaatttgacaggttttcccctttttgactgggtttgggtatgggtatgggtttt 25905708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #43
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 503 - 551
Target Start/End: Complemental strand, 37217909 - 37217861
Alignment:
Q  503 tgacactctcttatcaaagttctcttttatctccttccatatctcacac 551  Q
    |||||||| | ||||| |||||||| || ||||||||||||||||||||    
T  37217909 tgacactcacatatcatagttctctcttctctccttccatatctcacac 37217861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 66; Significance: 8e-29; HSPs: 31)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 66; E-Value: 8e-29
Query Start/End: Original strand, 264 - 551
Target Start/End: Complemental strand, 38973066 - 38972774
Alignment:
Q  264 ccacccgaaccaaactcaattcgacaggttttgcccgctttgactgggtttggttatgggtttgagtttttcccgattttcaaaac--gagtatgggaca 361  Q
    |||||| ||||||||||| || |||||||||| |||| ||||||||||||| | |||| ||||| ||||||||||| |||||||||  | |||||||| |    
T  38973066 ccaccccaaccaaactcattttgacaggttttccccgttttgactgggtttaggtatgagtttgggtttttcccga-tttcaaaacatgggtatgggata 38972968  T
Q  362 ggtaacggggat----gtactcatcccgaatccatactcaaactcgtacctaatgtagaaaatcattttaataccccttttctataaataaaaatcgaaa 457  Q
    ||||||||| ||    |||| || |||||| |||||||||||| | |  | |||| | ||||||| |||| || ||||||| |||||||  |||  ||||    
T  38972967 ggtaacgggaatataggtacccaccccgaacccatactcaaacccatctcaaatgcataaaatcaatttattaacccttttatataaatcgaaactgaaa 38972868  T
Q  458 ccctaaatcatttcactcacatagtcaaagtctcgttcatttagttgacactctcttatcaaagttctcttttatctccttccatatctcacac 551  Q
    ||||||||||||| | |||||  || | |||||   || || |  |||||||| ||||||| |||||||| |||||||||| ||||| ||||||    
T  38972867 ccctaaatcatttgattcacactgttagagtctaaatctttcatatgacactcacttatcatagttctctcttatctcctttcatatatcacac 38972774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 268 - 551
Target Start/End: Original strand, 40187606 - 40187893
Alignment:
Q  268 ccgaaccaaactcaattcgacaggttttgcccgctttgactgggtttggttatgggtttgagtttttcccgattttcaaa-acgagtatgggacaggtaa 366  Q
    |||||||||||||| || ||| |||||| | ||||||||||||||||||  ||| ||||| ||||| ||| ||||  ||| ||| ||  | ||| |||||    
T  40187606 ccgaaccaaactcattttgacgggttttcctcgctttgactgggtttggaaatgagtttgggttttccccaatttcaaaacacgggtgcgagacgggtaa 40187705  T
Q  367 cggggat----gtactcatcccgaatccatactcaaactcgtacctaatgtagaaaatcattttaataccccttttctataaataaaaatcgaaacccta 462  Q
    ||| |||    ||| ||| ||| ||  ||||| ||||||||| || ||| |||||||| | |||| |||| ||||| ||||||||  |||  ||| ||||    
T  40187706 cggagatataggtattca-cccaaactcatacccaaactcgtcccgaatatagaaaattaatttattacctcttttatataaatagtaatgaaaatccta 40187804  T
Q  463 aatcatttcactcacatagtcaaagtctcgttcatttagttgacactctcttatcaaagttctcttttatctccttccatatctcacac 551  Q
    |||||||| ||||||||||||| ||| ||  || || || |||||||| ||||||| |||||||| ||||||| |||||||||||||||    
T  40187805 aatcattttactcacatagtcagagtttcaatctttcagatgacactcacttatcatagttctctcttatctcattccatatctcacac 40187893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 382 - 550
Target Start/End: Original strand, 7350475 - 7350643
Alignment:
Q  382 cccgaatccatactcaaactcgtacctaatgtagaaaatcattttaataccccttttctataaataaaaatcgaaaccctaaatcatttcactcacatag 481  Q
    |||||| ||||||| |||| |||  | |||||||||||| | |||| || | ||||| ||||||||  ||||||||||||||||||||| ||||||||||    
T  7350475 cccgaacccatacttaaacccgtctcaaatgtagaaaattaatttattatcgcttttatataaatagtaatcgaaaccctaaatcattttactcacatag 7350574  T
Q  482 tcaaagtctcgttcatttagttgacactctcttatcaaagttctcttttatctccttccatatctcaca 550  Q
    | | |||| |  || || ||  ||| ||| ||||||| |||||||| ||||||||||||||||||||||    
T  7350575 ttagagtcgcaatctttgagacgacgctcacttatcatagttctctcttatctccttccatatctcaca 7350643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 372 - 551
Target Start/End: Complemental strand, 17153200 - 17153021
Alignment:
Q  372 atgtactcatcccgaatccatactcaaactcgtacctaatgtagaaaatcattttaataccccttttctataaataaaaatcgaaaccctaaatcatttc 471  Q
    ||||||||||||| || |||||| ||||| ||| || |||||||||||||| |||| |||||||| |  ||||||| ||||| ||| ||||||| |||||    
T  17153200 atgtactcatcccaaacccatacccaaacccgtcccgaatgtagaaaatcaatttattaccccttctagataaatagaaatccaaaacctaaataatttc 17153101  T
Q  472 actcacatagtcaaagtctcgttcatttagttgacactctcttatcaaagttctcttttatctccttccatatctcacac 551  Q
    ||||||| ||||| |  |||  || || |  ||| | || ||||||| |||||||| || ||| ||||||||||||||||    
T  17153100 actcacacagtcagatactcagtctttcaaatgagattcacttatcatagttctctattttcttcttccatatctcacac 17153021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 261 - 370
Target Start/End: Original strand, 13401946 - 13402056
Alignment:
Q  261 tacccacccgaaccaaactcaattcgacaggttttgcccgctttgactgggtttggttatgggtttgagtttttcccgattttcaaa-acgagtatggga 359  Q
    ||||| |||||||||||| ||||| ||| | ||||  ||| ||||||| ||||||| ||||||| |||||||||||||||||||||| ||| |||||| |    
T  13401946 tacccgcccgaaccaaacccaatttgacggattttttccgttttgactaggtttgggtatgggtatgagtttttcccgattttcaaacacgggtatggaa 13402045  T
Q  360 caggtaacggg 370  Q
    | |||||||||    
T  13402046 cgggtaacggg 13402056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 261 - 511
Target Start/End: Original strand, 16311235 - 16311489
Alignment:
Q  261 tacccacccgaaccaaactcaattcgacaggttttgcccgctttgactgggtttggttatgggtttgagtttttcccgattttcaaa-acgagtatggga 359  Q
    ||||| || |||||||||  |||| ||| | |||| |||||||||| ||||||||| |||| |||||||||||| |||||||  ||| ||||||| | ||    
T  16311235 tacccgcctgaaccaaacctaatttgacggttttttcccgctttgattgggtttggatatgagtttgagttttttccgatttcaaaacacgagtacgaga 16311334  T
Q  360 caggtaacggggat----gtactcatcccgaatccatactcaaactcgtacctaatgtagaaaatcattttaataccccttttctataaataaaaatcga 455  Q
    | | |||| |||||    |||| || |||||| ||||| ||||||  ||  | ||||| |||||||| |||| || ||||||| |||||||| ||| | |    
T  16311335 cggataacagggatataggtacccaccccgaacccatattcaaacctgtctcgaatgttgaaaatcaatttattatcccttttatataaatagaaa-cca 16311433  T
Q  456 aaccctaaatcatttcactcacatagtcaaagtctcgttcatttagttgacactct 511  Q
    ||||||||||||||| |||| || ||||  ||||||  || || ||||||||||||    
T  16311434 aaccctaaatcattttactcgcagagtctcagtctcagtctttcagttgacactct 16311489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 261 - 370
Target Start/End: Original strand, 20973438 - 20973548
Alignment:
Q  261 tacccacccgaaccaaactcaattcgacaggttttgcccgctttgactgggtttggttatgggtttgagtttttcccgattttcaaa-acgagtatggga 359  Q
    ||||| |||||||||||| || |  ||| |||||| |||| ||||||||||||||||||||||| || ||||| ||||||||||||| ||| ||||||||    
T  20973438 tacccgcccgaaccaaacccattctgacgggttttccccgttttgactgggtttggttatgggtatgggttttccccgattttcaaacacgggtatggga 20973537  T
Q  360 caggtaacggg 370  Q
      |||||||||    
T  20973538 tgggtaacggg 20973548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 261 - 370
Target Start/End: Complemental strand, 4583266 - 4583156
Alignment:
Q  261 tacccacccgaaccaaactcaattcgacaggttttgcccgctttgactgggtttggttatgggtttgagtttttcccgattttcaaa-acgagtatggga 359  Q
    ||||| |||||||||||| ||||| ||| |||||| |||| ||||| ||||||||| ||||||| || ||||| ||||||||  ||| ||| ||||||||    
T  4583266 tacccgcccgaaccaaacccaatttgacgggttttccccgttttgattgggtttggatatgggtatgggttttccccgatttcaaaacacgggtatggga 4583167  T
Q  360 caggtaacggg 370  Q
    | |||||||||    
T  4583166 cgggtaacggg 4583156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 261 - 370
Target Start/End: Complemental strand, 4920973 - 4920863
Alignment:
Q  261 tacccacccgaaccaaactcaattcgacaggttttgcccgctttgactgggtttggttatgggtttgagtttttcccgattttcaaa-acgagtatggga 359  Q
    ||||| |||||||||||| ||||| ||| ||||||  ||| ||||||||||||||||||||||| || ||||| |||||| |  ||| ||| ||||||||    
T  4920973 tacccgcccgaaccaaacccaatttgacgggttttctccgttttgactgggtttggttatgggtatgggttttccccgatctcaaaacacgggtatggga 4920874  T
Q  360 caggtaacggg 370  Q
    | |||||||||    
T  4920873 cgggtaacggg 4920863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 261 - 342
Target Start/End: Original strand, 29245893 - 29245974
Alignment:
Q  261 tacccacccgaaccaaactcaattcgacaggttttgcccgctttgactgggtttggttatgggtttgagtttttcccgattt 342  Q
    ||||| |||||||||||||||||| ||| |||||| |||| ||||||| ||||||| ||||||| ||||||||  |||||||    
T  29245893 tacccgcccgaaccaaactcaatttgacgggttttccccgttttgactaggtttgggtatgggtatgagttttctccgattt 29245974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 308 - 478
Target Start/End: Original strand, 27900390 - 27900565
Alignment:
Q  308 tgggtttggttatgggtttgagtttttcccgattttcaaaac--gagtatgggacaggtaacggggat----gtactcatcccgaatccatactcaaact 401  Q
    ||||||||| ||| ||||||||||||||||||||| ||||||  | ||||||||| ||||| | ||||    |||| |||| |||| |||||| ||||      
T  27900390 tgggtttggatataggtttgagtttttcccgattt-caaaacatgggtatgggacgggtaatgtggatataggtacccatctcgaacccatacccaaatc 27900488  T
Q  402 cgtacctaatgtagaaaatcattttaataccccttttctataaataaaaatcgaaaccctaaatcatttcactcaca 478  Q
    ||  || |||||| ||||||| |||| | || ||||| |||||||| |||  ||||||||||||||||||| |||||    
T  27900489 cgccccgaatgtataaaatcaatttatttcctcttttatataaatagaaactgaaaccctaaatcatttcagtcaca 27900565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 390 - 549
Target Start/End: Original strand, 18451961 - 18452120
Alignment:
Q  390 catactcaaactcgtacctaatgtagaaaatcattttaataccccttttctataaataaaaatcgaaaccctaaatcatttcactcacatagtcaaagtc 489  Q
    |||| |||||||||| || | |||||||||||| |||| || ||||||| ||| |||| ||||   || | || ||||||||||||||| ||| ||||||    
T  18451961 cataatcaaactcgtcccgattgtagaaaatcaatttattatcccttttatattaatagaaatacgaatcttagatcatttcactcacacagttaaagtc 18452060  T
Q  490 tcgttcatttagttgacactctcttatcaaagttctcttttatctccttccatatctcac 549  Q
    ||| || || || ||| | || |||||||  ||||||| || |||||||||||| |||||    
T  18452061 tcggtctttcagatgatagtcacttatcatggttctctcttttctccttccataactcac 18452120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 268 - 370
Target Start/End: Complemental strand, 30996735 - 30996633
Alignment:
Q  268 ccgaaccaaactcaattcgacaggttttgcccgctttgactgggtttggttatgggtttgagtttttcccgattttcaaa-acgagtatgggacaggtaa 366  Q
    ||||||||||| ||||| ||| | |||| |||| ||||||||||||||| |||| || || |||||  |||||||| ||| |||||||||||||||||||    
T  30996735 ccgaaccaaacccaatttgacggatttt-cccgttttgactgggtttgggtatgagtatgggttttctccgattttaaaacacgagtatgggacaggtaa 30996637  T
Q  367 cggg 370  Q
    ||||    
T  30996636 cggg 30996633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 374 - 491
Target Start/End: Complemental strand, 8020644 - 8020527
Alignment:
Q  374 gtactcatcccgaatccatactcaaactcgtacctaatgtagaaaatcattttaataccccttttctataaataaaaatcgaaaccctaaatcatttcac 473  Q
    ||||||||| ||||  ||||| ||||| ||| |  |||||||||||||| |||| |||||||||| ||||||  |||| | ||||||||||| ||| |||    
T  8020644 gtactcatctcgaactcatacgcaaacccgttctgaatgtagaaaatcaatttactaccccttttatataaaggaaaacctaaaccctaaattattccac 8020545  T
Q  474 tcacatagtcaaagtctc 491  Q
    ||| | ||||| ||||||    
T  8020544 tcaaacagtcagagtctc 8020527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 261 - 342
Target Start/End: Complemental strand, 24207830 - 24207750
Alignment:
Q  261 tacccacccgaaccaaactcaattcgacaggttttgcccgctttgactgggtttggttatgggtttgagtttttcccgattt 342  Q
    ||||||||||||||||||| | || ||| | |||| |||||||||| || |||||| |||||||||||||||| ||||||||    
T  24207830 tacccacccgaaccaaactaagtttgac-gatttttcccgctttgattgagtttgggtatgggtttgagttttccccgattt 24207750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 267 - 370
Target Start/End: Original strand, 5908636 - 5908740
Alignment:
Q  267 cccgaaccaaactcaattcgacaggttttgcccgctttgactgggtttggttatgggtttgagtttttcccgattttcaaa-acgagtatgggacaggta 365  Q
    |||||||||||| ||||| ||| |||||| |||  ||||| ||||||||| ||||||| |||||||| |||||| |  ||| ||| ||||||||| ||||    
T  5908636 cccgaaccaaacccaatttgacgggttttccccattttgattgggtttgggtatgggtatgagttttccccgatctcgaaacacgggtatgggacgggta 5908735  T
Q  366 acggg 370  Q
    |||||    
T  5908736 acggg 5908740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 390 - 478
Target Start/End: Complemental strand, 12457530 - 12457442
Alignment:
Q  390 catactcaaactcgtacctaatgtagaaaatcattttaataccccttttctataaataaaaatcgaaaccctaaatcatttcactcaca 478  Q
    ||||| ||||| ||| || |||||||||||||| |||| |||||||||  |||||||| ||| | |||  |||||||||||||||||||    
T  12457530 catacccaaacccgtcccgaatgtagaaaatcaatttattacccctttaatataaatagaaacctaaagtctaaatcatttcactcaca 12457442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 261 - 340
Target Start/End: Original strand, 6092471 - 6092550
Alignment:
Q  261 tacccacccgaaccaaactcaattcgacaggttttgcccgctttgactgggtttggttatgggtttgagtttttcccgat 340  Q
    ||||| ||||||||||| ||||||  || |||||| |||| ||||| ||||||||| ||||||| || ||||||||||||    
T  6092471 tacccgcccgaaccaaattcaatttaacgggttttccccgttttgattgggtttgggtatgggtatgggtttttcccgat 6092550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 409 - 551
Target Start/End: Original strand, 457467 - 457605
Alignment:
Q  409 aatgtagaaaatcattttaataccccttttctataaataaaaatcgaaaccctaaatcatttcactcacatagtcaaagtctcgttcatttagttgacac 508  Q
    |||||| ||||||| |||| ||| |||||| |||||||| ||| | ||| |||||||||||||||| ||| ||    ||| | | || || || ||| ||    
T  457467 aatgtataaaatcaatttattacaccttttatataaatagaaaccaaaatcctaaatcatttcacttacagag----agtattgatctttcagatgatac 457562  T
Q  509 tctcttatcaaagttctcttttatctccttccatatctcacac 551  Q
    || |||||||  ||||||| |||||||||| ||||||||||||    
T  457563 tcacttatcatcgttctctcttatctccttacatatctcacac 457605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 267 - 340
Target Start/End: Complemental strand, 10127215 - 10127142
Alignment:
Q  267 cccgaaccaaactcaattcgacaggttttgcccgctttgactgggtttggttatgggtttgagtttttcccgat 340  Q
    |||||||||||  ||||| ||| |||||| |||| ||||||||||||||| ||||||| || ||||| ||||||    
T  10127215 cccgaaccaaatccaatttgacgggttttccccgttttgactgggtttgggtatgggtatgggttttccccgat 10127142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 268 - 333
Target Start/End: Original strand, 12834523 - 12834588
Alignment:
Q  268 ccgaaccaaactcaattcgacaggttttgcccgctttgactgggtttggttatgggtttgagtttt 333  Q
    ||||||||||||||||| ||| |||||| |||  ||||||||||||||| ||||||| || |||||    
T  12834523 ccgaaccaaactcaatttgacgggttttccccattttgactgggtttgggtatgggtatgggtttt 12834588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 261 - 367
Target Start/End: Complemental strand, 18207165 - 18207058
Alignment:
Q  261 tacccacccgaaccaaactcaattcgacaggttttgcccgctttgactgggtttggttatgggtttgagtttttcccgattttcaaaa--cgagtatggg 358  Q
    ||||||||| |||||||| ||||| |||  ||||| |||| |||||||||||||||  ||| ||||| ||||| | ||| ||||||||  || |||||||    
T  18207165 tacccacccaaaccaaacccaatttgacgtgtttttcccgttttgactgggtttgggcatgagtttgggttttcctcga-tttcaaaactcgtgtatggg 18207067  T
Q  359 acaggtaac 367  Q
    |||||||||    
T  18207066 acaggtaac 18207058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 390 - 551
Target Start/End: Complemental strand, 29664984 - 29664823
Alignment:
Q  390 catactcaaactcgtacctaatgtagaaaatcattttaataccccttttctataaataaaaatcgaaaccctaaatcatttcactcacatagtcaaagtc 489  Q
    ||||| ||||| ||| || |||||| ||||||| |||| |||||||||| | |||||| |||   |||| ||||||||||||| | |||| |||| ||||    
T  29664984 catacccaaacccgtcccgaatgtacaaaatcaatttactaccccttttatttaaatagaaactcaaactctaaatcatttcatttacattgtcagagtc 29664885  T
Q  490 tcgttcatttagttgacactctcttatcaaagttctcttttatctccttccatatctcacac 551  Q
    ||  |  || || |||||||| ||||||| | |||||| || |||| ||| |||||| ||||    
T  29664884 tcagtatttcagatgacactcacttatcataattctctcttttctctttcaatatctaacac 29664823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 261 - 340
Target Start/End: Complemental strand, 40517953 - 40517874
Alignment:
Q  261 tacccacccgaaccaaactcaattcgacaggttttgcccgctttgactgggtttggttatgggtttgagtttttcccgat 340  Q
    ||||| || |||||||| |||||| ||| | |||| |||| ||||||||||||||| ||||||| || ||||| ||||||    
T  40517953 tacccgcctgaaccaaattcaatttgacggatttttcccgttttgactgggtttgggtatgggtatgggttttccccgat 40517874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 268 - 342
Target Start/End: Original strand, 12866500 - 12866574
Alignment:
Q  268 ccgaaccaaactcaattcgacaggttttgcccgctttgactgggtttggttatgggtttgagtttttcccgattt 342  Q
    ||||||||||  ||||| ||| |||||| |||  ||||||||||||||| ||||||| ||||||||  |||||||    
T  12866500 ccgaaccaaatccaatttgacgggttttccccattttgactgggtttgggtatgggtatgagttttctccgattt 12866574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 261 - 370
Target Start/End: Complemental strand, 15890353 - 15890243
Alignment:
Q  261 tacccacccgaaccaaactcaattcgacaggttttgcccgctttgactgggtttggttatgggtttgagtttttcccgattttcaaa-acgagtatggga 359  Q
    ||||| |||||||||||  ||||| ||| |||||| |||| ||||||| ||||||| |||| || || |||||  |||||||  ||| ||| ||||||||    
T  15890353 tacccgcccgaaccaaatccaatttgacgggtttttcccgttttgactaggtttggctatgtgtatgggttttctccgatttcaaaacacgggtatggga 15890254  T
Q  360 caggtaacggg 370  Q
    | |||||||||    
T  15890253 cgggtaacggg 15890243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #27
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 261 - 370
Target Start/End: Original strand, 33727943 - 33728053
Alignment:
Q  261 tacccacccgaaccaaactcaattcgacaggttttgcccgctttgactgggtttggttatgggtttgagtttttcccgattttcaaa-acgagtatggga 359  Q
    ||||| |||||||||||| ||||| ||| | |||| |||| ||||| ||||||||| ||||||| ||  |||| |||||| |  ||| ||| ||||||||    
T  33727943 tacccgcccgaaccaaacccaatttgacggattttccccgttttgattgggtttggatatgggtatggattttccccgatctcaaaacacgggtatggga 33728042  T
Q  360 caggtaacggg 370  Q
    | |||||||||    
T  33728043 cgggtaacggg 33728053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #28
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 409 - 551
Target Start/End: Complemental strand, 35584110 - 35583969
Alignment:
Q  409 aatgtagaaaatcattttaataccccttttctataaataaaaatcgaaaccctaaatcatttcactcacatagtcaaagtctcgttcatttagttgacac 508  Q
    |||||| ||||||| |||| ||||| |||| |||||||| |||   ||||||||||||||||  |||||| ||||| ||||||  || || || || |||    
T  35584110 aatgtacaaaatcaatttattaccc-ttttatataaatagaaactcaaaccctaaatcattttgctcacacagtcagagtctcagtctttcagatgtcac 35584012  T
Q  509 tctcttatcaaagttctcttttatctccttccatatctcacac 551  Q
    ||  ||||||  ||||||| || ||||||| |||||| |||||    
T  35584011 tcatttatcactgttctctgttttctcctttcatatcccacac 35583969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #29
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 297 - 342
Target Start/End: Complemental strand, 12915584 - 12915539
Alignment:
Q  297 cccgctttgactgggtttggttatgggtttgagtttttcccgattt 342  Q
    |||| |||||||||| |||| |||||||||| ||||||||||||||    
T  12915584 cccgatttgactggggttgggtatgggtttgggtttttcccgattt 12915539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #30
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 374 - 478
Target Start/End: Complemental strand, 6810187 - 6810083
Alignment:
Q  374 gtactcatcccgaatccatactcaaactcgtacctaatgtagaaaatcattttaataccccttttctataaataaaaatcgaaaccctaaatcatttcac 473  Q
    ||||||| |||||| |||||| ||||| | | || ||||  |||||||| |||| | |||||||| ||| |||| ||| | ||||| ||||| |||||||    
T  6810187 gtactcaccccgaacccatacccaaacccatcccgaatggtgaaaatcaatttattgccccttttatatcaatagaaacccaaaccttaaatgatttcac 6810088  T
Q  474 tcaca 478  Q
    |||||    
T  6810087 tcaca 6810083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #31
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 268 - 324
Target Start/End: Original strand, 42717579 - 42717635
Alignment:
Q  268 ccgaaccaaactcaattcgacaggttttgcccgctttgactgggtttggttatgggt 324  Q
    ||||||||||| ||||| ||| |||||| |||| ||||||||| ||||| |||||||    
T  42717579 ccgaaccaaacccaatttgacgggtttttcccgttttgactggatttgggtatgggt 42717635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0244 (Bit Score: 59; Significance: 1e-24; HSPs: 1)
Name: scaffold0244
Description:

Target: scaffold0244; HSP #1
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 409 - 551
Target Start/End: Original strand, 4674 - 4816
Alignment:
Q  409 aatgtagaaaatcattttaataccccttttctataaataaaaatcgaaaccctaaatcatttcactcacatagtcaaagtctcgttcatttagttgacac 508  Q
    ||||||||||||||  |||  ||||||||| |||||||| ||||| |||| ||||||||||||||||||| ||||| |||| || || ||||| | ||||    
T  4674 aatgtagaaaatcaaattataaccccttttatataaatagaaatcaaaactctaaatcatttcactcacacagtcagagtcacggtcttttagataacac 4773  T
Q  509 tctcttatcaaagttctcttttatctccttccatatctcacac 551  Q
    || ||||||| |||||||| || | ||||||||||| ||||||    
T  4774 tcacttatcatagttctctcttttttccttccatatttcacac 4816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 58; Significance: 4e-24; HSPs: 38)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 143 - 259
Target Start/End: Complemental strand, 22384975 - 22384859
Alignment:
Q  143 cgtttttaatattaaacgaagtactttttgaatgattaagatgtgtgacacccttgcatgtttaattaattattgtattttaattagaaactaataagt- 241  Q
    |||||||||| ||||| |||||| ||||| | ||| |||||||||| |||||||||||||||||||||||||||||||||| |||||||| ||||| ||     
T  22384975 cgtttttaat-ttaaatgaagtattttttaattgaataagatgtgttacacccttgcatgtttaattaattattgtatttttattagaaaataatatgta 22384877  T
Q  242 ggggtttagggtgttaca 259  Q
      ||||||||||||||||    
T  22384876 acggtttagggtgttaca 22384859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 56; E-Value: 7e-23
Query Start/End: Original strand, 98 - 193
Target Start/End: Original strand, 32873121 - 32873216
Alignment:
Q  98 gatgtgaaaagttactttgatgttttgagaacttttcgacaacgacgtttttaatattaaacgaagtactttttgaatgattaagatgtgtgacac 193  Q
    |||||||||| |||||| |||||||||||||||||||||| | || ||||||||||||||| | |||||||||| | ||||||||| |||||||||    
T  32873121 gatgtgaaaatttacttcgatgttttgagaacttttcgactatgatgtttttaatattaaatggagtacttttttattgattaagaagtgtgacac 32873216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 56; E-Value: 7e-23
Query Start/End: Original strand, 428 - 551
Target Start/End: Original strand, 35248494 - 35248617
Alignment:
Q  428 ataccccttttctataaataaaaatcgaaaccctaaatcatttcactcacatagtcaaagtctcgttcatttagttgacactctcttatcaaagttctct 527  Q
    ||||||||||| |||||||| |||  ||||||||||||||||||||||||| || || ||||||  || || |  |||||||| ||||| | ||||||||    
T  35248494 ataccccttttatataaatagaaaatgaaaccctaaatcatttcactcacacagacagagtctcagtctttcaaatgacactcgcttattatagttctct 35248593  T
Q  528 tttatctccttccatatctcacac 551  Q
     |||||||||||||||||||||||    
T  35248594 cttatctccttccatatctcacac 35248617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 99 - 259
Target Start/End: Complemental strand, 34891744 - 34891586
Alignment:
Q  99 atgtgaaaagttactttgatgttttgagaacttttcgacaacgacgtttttaatattaaacgaagtactttttgaatgattaagatgtgtgacacccttg 198  Q
    ||||||||| | ||||||||||| |||||||||||| ||  ||| ||||||||| ||||| |||||| ||||  | |||  |||||||||||||||||||    
T  34891744 atgtgaaaaatcactttgatgttatgagaacttttccactgcgatgtttttaat-ttaaatgaagtattttt--attgaaaaagatgtgtgacacccttg 34891648  T
Q  199 catgtttaattaattattgtattttaattagaaactaataagtggg-gtttagggtgttaca 259  Q
    |||||||||||  ||| |||||||| |||| ||| ||||| |||||  ||||||||||||||    
T  34891647 catgtttaattttttaatgtatttttattataaaataatatgtgggtttttagggtgttaca 34891586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 267 - 370
Target Start/End: Original strand, 7314595 - 7314699
Alignment:
Q  267 cccgaaccaaactcaattcgacaggttttgcccgctttgactgggtttggttatgggtttgagtttttcccgattttcaaa-acgagtatgggacaggta 365  Q
    |||||||||||||||||| ||| | |||| |||| ||||||||||||||| ||||||| || ||||| ||||||||| ||| ||||||||||||| ||||    
T  7314595 cccgaaccaaactcaatttgacggattttccccgttttgactgggtttggatatgggtatgggttttccccgattttaaaatacgagtatgggacgggta 7314694  T
Q  366 acggg 370  Q
    |||||    
T  7314695 acggg 7314699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 409 - 550
Target Start/End: Original strand, 29656829 - 29656971
Alignment:
Q  409 aatgtagaaaatcattttaataccccttttctataaataaaaatcgaaaccctaaatcatttcactcacatagtcaaagtctcgttcatttagttgacac 508  Q
    |||||| ||||||| |||| || ||||||| |||||||||||| |  ||||||||||||||| ||||||| ||||||||||||  || || || ||||||    
T  29656829 aatgtataaaatcaatttattatcccttttatataaataaaaaccataaccctaaatcatttgactcacacagtcaaagtctcagtctttcagatgacac 29656928  T
Q  509 tctc-ttatcaaagttctcttttatctccttccatatctcaca 550  Q
    |  | |||||| | |||||| |||||||||| |||||||||||    
T  29656929 tgactttatcataattctctcttatctccttacatatctcaca 29656971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 180 - 259
Target Start/End: Original strand, 16933679 - 16933756
Alignment:
Q  180 aagatgtgtgacacccttgcatgtttaattaattattgtattttaattagaaactaataagtggggtttagggtgttaca 259  Q
    ||||||||||||||||||| |||||||||||||||||||||||| |||||||| |||||  || || |||||||||||||    
T  16933679 aagatgtgtgacacccttgtatgtttaattaattattgtatttttattagaaaataata--tgtggattagggtgttaca 16933756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 390 - 551
Target Start/End: Original strand, 34544386 - 34544547
Alignment:
Q  390 catactcaaactcgtacctaatgtagaaaatcattttaataccccttttctataaataaaaatcgaaaccctaaatcatttcactcacatagtcaaagtc 489  Q
    ||||||||||| | | || |||||||||||||  |||| ||||| |||| ||||||||||||   ||||||||||| |||||| ||||| |   | | ||    
T  34544386 catactcaaacccctcccgaatgtagaaaatctatttattacccattttatataaataaaaactcaaaccctaaataatttcattcacacaacgagactc 34544485  T
Q  490 tcgttcatttagttgacactctcttatcaaagttctcttttatctccttccatatctcacac 551  Q
    |||||| ||||| ||||| || ||| ||| |||||||| ||  |||||||||||||||||||    
T  34544486 tcgttcttttagatgacaatcacttctcatagttctctctttactccttccatatctcacac 34544547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 183 - 262
Target Start/End: Original strand, 24852267 - 24852346
Alignment:
Q  183 atgtgtgacacccttgcatgtttaattaattattgtattttaattagaaactaataagtggggtttagggtgttacaata 262  Q
    |||||||||||||||||||| || | |||||||| | |||| |||||||| ||||| |||||||||| ||||||||||||    
T  24852267 atgtgtgacacccttgcatgatttaataattattatgtttttattagaaaataatatgtggggtttatggtgttacaata 24852346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 409 - 551
Target Start/End: Complemental strand, 30696919 - 30696777
Alignment:
Q  409 aatgtagaaaatcattttaataccccttttctataaataaaaatcgaaaccctaaatcatttcactcacatagtcaaagtctcgttcatttagttgacac 508  Q
    |||||| ||||||| |||| ||||| |||| |||||||| ||||  |||||||||||||| ||||||||| ||| | ||||||| || || |  |||||     
T  30696919 aatgtaaaaaatcaatttattacccattttatataaatagaaattcaaaccctaaatcatgtcactcacacagttagagtctcggtctttcatatgacat 30696820  T
Q  509 tctcttatcaaagttctcttttatctccttccatatctcacac 551  Q
    ||||||| || |||||||| || ||||||  | ||||||||||    
T  30696819 tctcttaccatagttctctattttctcctctcgtatctcacac 30696777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 261 - 370
Target Start/End: Complemental strand, 30847094 - 30846984
Alignment:
Q  261 tacccacccgaaccaaactcaattcgacaggttttgcccgctttgactgggtttggttatgggtttgagtttttcccgattttcaaa-acgagtatggga 359  Q
    ||||| |||||||||||| ||||| ||| |||||| |||| ||||||||||||||| ||||||| || ||||| |||||| |  ||| ||| ||||||||    
T  30847094 tacccgcccgaaccaaacccaatttgacgggttttccccgttttgactgggtttgggtatgggtatgggttttccccgatctcgaaacacgggtatggga 30846995  T
Q  360 caggtaacggg 370  Q
    | |||||||||    
T  30846994 cgggtaacggg 30846984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 261 - 370
Target Start/End: Complemental strand, 37106840 - 37106730
Alignment:
Q  261 tacccacccgaaccaaactcaattcgacaggttttgcccgctttgactgggtttggttatgggtttgagtttttcccgattttcaaa-acgagtatggga 359  Q
    ||||| |||||||||||| ||||| ||| |||||| |||| |||||||| |||||| ||||||| || ||||| ||||||||  ||| ||| ||||||||    
T  37106840 tacccgcccgaaccaaacccaatttgacgggttttccccgttttgactgagtttgggtatgggtatgggttttccccgatttcaaaacacgggtatggga 37106741  T
Q  360 caggtaacggg 370  Q
    | |||||||||    
T  37106740 cgggtaacggg 37106730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 261 - 370
Target Start/End: Original strand, 37472700 - 37472810
Alignment:
Q  261 tacccacccgaaccaaactcaattcgacaggttttgcccgctttgactgggtttggttatgggtttgagtttttcccgattttcaaa-acgagtatggga 359  Q
    ||||| |||||||||||||||||| ||| |||||| |||| ||||||||||||||| |||| || ||  |||| ||||||||  ||| ||| ||||||||    
T  37472700 tacccgcccgaaccaaactcaatttgacgggttttccccgttttgactgggtttgggtatgagtatggattttccccgatttcaaaacacgggtatggga 37472799  T
Q  360 caggtaacggg 370  Q
    | |||||||||    
T  37472800 cgggtaacggg 37472810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 383 - 551
Target Start/End: Complemental strand, 35965356 - 35965187
Alignment:
Q  383 ccgaatccatactcaaactcgtacctaatgtagaaaatcattttaataccccttttcta-taaataaaaatcgaaaccctaaatcatttcactcacatag 481  Q
    ||||| |||||| ||||| ||| || |||||||||||||| |||| | |||||||| || ||||||  ||| ||| || |||||||||||||||| | ||    
T  35965356 ccgaacccatacccaaacccgtcccgaatgtagaaaatcaatttattgccccttttatactaaataggaattgaatccataaatcatttcactcatacag 35965257  T
Q  482 tcaaagtctcgttcatttagttgacactctcttatcaaagttctcttttatctccttccatatctcacac 551  Q
    | |   ||||  |  || || | ||| || ||||||| ||||||||||||||||||||||||||||||||    
T  35965256 tgaggatctcagtttttcagataacattcacttatcatagttctcttttatctccttccatatctcacac 35965187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 261 - 327
Target Start/End: Original strand, 31942126 - 31942192
Alignment:
Q  261 tacccacccgaaccaaactcaattcgacaggttttgcccgctttgactgggtttggttatgggtttg 327  Q
    ||||| ||| |||||||||||||| ||  |||||| |||||||||||||||||||| ||||||||||    
T  31942126 tacccgcccaaaccaaactcaatttgatgggtttttcccgctttgactgggtttggatatgggtttg 31942192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 261 - 340
Target Start/End: Complemental strand, 9632534 - 9632455
Alignment:
Q  261 tacccacccgaaccaaactcaattcgacaggttttgcccgctttgactgggtttggttatgggtttgagtttttcccgat 340  Q
    ||||| |||||||||||||||||| ||| |||||| |||| ||||| ||||||||  ||||||| || ||||| ||||||    
T  9632534 tacccgcccgaaccaaactcaatttgacgggtttttcccgttttgaatgggtttgagtatgggtatgggttttccccgat 9632455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 181 - 259
Target Start/End: Original strand, 16939052 - 16939133
Alignment:
Q  181 agatgtgtgacacccttgcatgtttaattaattattgtattttaattagaaactaata---agtggggtttagggtgttaca 259  Q
    |||| |||||||||||||| |||| ||||| |||||||||||| |||||||| |||||   | ||||| |||||||||||||    
T  16939052 agatctgtgacacccttgcttgttcaattatttattgtatttttattagaaaataatatgtactggggattagggtgttaca 16939133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 181 - 259
Target Start/End: Original strand, 17009717 - 17009798
Alignment:
Q  181 agatgtgtgacacccttgcatgtttaattaattattgtattttaattagaaactaata---agtggggtttagggtgttaca 259  Q
    |||| |||||||||||||| |||| ||||| |||||||||||| |||||||| |||||   | ||||| |||||||||||||    
T  17009717 agatctgtgacacccttgcttgttcaattatttattgtatttttattagaaaataatatgtactggggattagggtgttaca 17009798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 320 - 483
Target Start/End: Complemental strand, 25210466 - 25210298
Alignment:
Q  320 tgggtttgagtttttcccgattttcaaa-acgagtatgggacaggtaacggggat----gtactcatcccgaatccatactcaaactcgtacctaatgta 414  Q
    |||||||  ||||||||||| ||| ||| ||| ||||||||| ||||||| ||||    |||| || ||| || ||||||  |||| | | || ||||||    
T  25210466 tgggtttaggtttttcccgactttaaaacacgggtatgggacgggtaacgaggatatatgtacccaccccaaacccataccaaaacccctcccgaatgta 25210367  T
Q  415 gaaaatcattttaataccccttttctataaataaaaatcgaaaccctaaatcatttcactcacatagtc 483  Q
    |||||||| |||  ||||| |||| |||||||| |||   |||||||||||||||||||||||| ||||    
T  25210366 gaaaatcaatttgttacccattttatataaatagaaactcaaaccctaaatcatttcactcacacagtc 25210298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 440 - 491
Target Start/End: Original strand, 40734708 - 40734759
Alignment:
Q  440 tataaataaaaatcgaaaccctaaatcatttcactcacatagtcaaagtctc 491  Q
    |||||||||||| | |||||||||||||||||||||||| ||||| ||||||    
T  40734708 tataaataaaaaccaaaaccctaaatcatttcactcacacagtcagagtctc 40734759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 268 - 342
Target Start/End: Complemental strand, 12341741 - 12341667
Alignment:
Q  268 ccgaaccaaactcaattcgacaggttttgcccgctttgactgggtttggttatgggtttgagtttttcccgattt 342  Q
    ||||||||||| ||||| ||| |||||| |||| |||||||| |||||| ||||||| || ||||| ||||||||    
T  12341741 ccgaaccaaacccaatttgacgggttttccccgttttgactgagtttgggtatgggtatgggttttccccgattt 12341667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 372 - 478
Target Start/End: Complemental strand, 13531981 - 13531875
Alignment:
Q  372 atgtactcatcccgaatccatactcaaactcgtacctaatgtagaaaatcattttaataccccttttctataaataaaaatcgaaaccctaaatcatttc 471  Q
    ||||| ||| |||||| ||| |||||||| ||  ||  ||||||||||||| |||| || || |||| |||||||| |||   |||||||||||||||||    
T  13531981 atgtattcaccccgaacccacactcaaacccgccccacatgtagaaaatcaatttattatccattttatataaatagaaactcaaaccctaaatcatttc 13531882  T
Q  472 actcaca 478  Q
    |||||||    
T  13531881 actcaca 13531875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 261 - 342
Target Start/End: Original strand, 12193768 - 12193849
Alignment:
Q  261 tacccacccgaaccaaactcaattcgacaggttttgcccgctttgactgggtttggttatgggtttgagtttttcccgattt 342  Q
    ||||||||||| |||||| ||||| ||| |||||| ||   ||||||||||||||| |||| || || ||||||||||||||    
T  12193768 tacccacccgagccaaacccaatttgacgggtttttccgattttgactgggtttgggtatgagtatgtgtttttcccgattt 12193849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 271 - 367
Target Start/End: Complemental strand, 13954883 - 13954787
Alignment:
Q  271 aaccaaactcaattcgacaggttttgcccgctttgactgggtttggttatgggtttgagtttttcccgattttcaaa-acgagtatgggacaggtaac 367  Q
    |||||||| ||| | ||||||||||   |||||||||||||||||| |||| |||||| |||| ||||||||| ||| ||| ||| ||||||||||||    
T  13954883 aaccaaacgcaaattgacaggttttctacgctttgactgggtttgggtatgtgtttgaattttccccgattttaaaacacg-gtacgggacaggtaac 13954787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 271 - 367
Target Start/End: Complemental strand, 14096090 - 14095994
Alignment:
Q  271 aaccaaactcaattcgacaggttttgcccgctttgactgggtttggttatgggtttgagtttttcccgattttcaaa-acgagtatgggacaggtaac 367  Q
    |||||||| ||| | ||||||||||   |||||||||||||||||| |||| |||||| |||| ||||||||| ||| ||| ||| ||||||||||||    
T  14096090 aaccaaacgcaaattgacaggttttctacgctttgactgggtttgggtatgtgtttgaattttccccgattttaaaacacg-gtacgggacaggtaac 14095994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 154 - 259
Target Start/End: Complemental strand, 24534287 - 24534183
Alignment:
Q  154 ttaaacgaagtactttttgaatgattaagatgtgtgacacccttgcatgtttaattaattattgtattttaattagaaactaataagtggggtttagggt 253  Q
    ||||||||||||||||| || ||| || ||||| | ||| |||| |||| || |||| |||||| ||||  |||| ||| ||||| ||||||||||||||    
T  24534287 ttaaacgaagtacttttggattgaatatgatgtctaacaacctttcatgctttatta-ttattgaatttctattaaaaaataatatgtggggtttagggt 24534189  T
Q  254 gttaca 259  Q
    ||||||    
T  24534188 gttaca 24534183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 261 - 360
Target Start/End: Complemental strand, 10920786 - 10920686
Alignment:
Q  261 tacccacccgaaccaaactcaattcgacaggttttgcccgctttgactgggtttggttatgggtttgagtttttcccgattttcaaa-acgagtatggga 359  Q
    ||||| |||||||||||  ||||| || ||||||| |||| ||||||||||||||| ||||||| ||  ||||| ||||| |  ||| ||||||||||||    
T  10920786 tacccgcccgaaccaaatccaatttgataggttttccccgttttgactgggtttgggtatgggtatggattttttccgatctcaaaacacgagtatggga 10920687  T
Q  360 c 360  Q
    |    
T  10920686 c 10920686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 261 - 333
Target Start/End: Complemental strand, 13830883 - 13830811
Alignment:
Q  261 tacccacccgaaccaaactcaattcgacaggttttgcccgctttgactgggtttggttatgggtttgagtttt 333  Q
    ||||| |||||||||||| ||||| ||| |||||| |||  ||||||||||||||| ||||||| || |||||    
T  13830883 tacccgcccgaaccaaacccaatttgacgggttttccccattttgactgggtttgggtatgggtatgggtttt 13830811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #29
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 302 - 373
Target Start/End: Original strand, 38342501 - 38342573
Alignment:
Q  302 tttgactgggtttggttatgggtttgagtttttcccgattttcaaa-acgagtatgggacaggtaacggggat 373  Q
    ||||| ||||||||| |||||||||||||||| ||||||||| ||| |||  || ||||| ||||||||||||    
T  38342501 tttgattgggtttggatatgggtttgagttttccccgattttaaaatacggatacgggacgggtaacggggat 38342573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #30
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 302 - 373
Target Start/End: Complemental strand, 43371660 - 43371588
Alignment:
Q  302 tttgactgggtttggttatgggtttgagtttttcccgattttcaaa-acgagtatgggacaggtaacggggat 373  Q
    |||||||| |||||| ||| |||||||||||| ||||||||| ||| ||| ||| ||||| ||||||||||||    
T  43371660 tttgactgagtttgggtattggtttgagttttccccgattttaaaatacgggtacgggacgggtaacggggat 43371588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #31
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 261 - 324
Target Start/End: Original strand, 24414073 - 24414136
Alignment:
Q  261 tacccacccgaaccaaactcaattcgacaggttttgcccgctttgactgggtttggttatgggt 324  Q
    ||||| |||||||||||| ||||| ||| |||||| |||| ||||| ||||||||| |||||||    
T  24414073 tacccgcccgaaccaaacccaatttgacgggttttccccgttttgattgggtttgggtatgggt 24414136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #32
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 460 - 551
Target Start/End: Original strand, 34214801 - 34214892
Alignment:
Q  460 ctaaatcatttcactcacatagtcaaagtctcgttcatttagttgacactctcttatcaaagttctcttttatctccttccatatctcacac 551  Q
    ||||||||||||||| ||| ||||| ||||||  || || |  |||||||| ||||||| ||||| || || |||||||| |||||||||||    
T  34214801 ctaaatcatttcactaacacagtcagagtctcagtctttcacatgacactcacttatcatagttcgctcttttctccttcgatatctcacac 34214892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #33
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 389 - 477
Target Start/End: Complemental strand, 13954760 - 13954672
Alignment:
Q  389 ccatactcaaactcgtacctaatgtagaaaatcattttaataccccttttctataaataaaaa-tcgaaaccctaaatcatttcactcac 477  Q
    |||||||||||| |||  | || |||||||||||  ||| |||| ||||| |||||||| ||| ||||| ||||||||||||||||||||    
T  13954760 ccatactcaaacccgtctcgaacgtagaaaatcaacttattaccacttttatataaatagaaactcgaa-ccctaaatcatttcactcac 13954672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #34
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 389 - 477
Target Start/End: Complemental strand, 14095967 - 14095879
Alignment:
Q  389 ccatactcaaactcgtacctaatgtagaaaatcattttaataccccttttctataaataaaaa-tcgaaaccctaaatcatttcactcac 477  Q
    |||||||||||| |||  | || |||||||||||  ||| |||| ||||| |||||||| ||| ||||| ||||||||||||||||||||    
T  14095967 ccatactcaaacccgtctcgaacgtagaaaatcaacttattaccacttttatataaatagaaactcgaa-ccctaaatcatttcactcac 14095879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #35
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 267 - 366
Target Start/End: Original strand, 10208378 - 10208477
Alignment:
Q  267 cccgaaccaaactcaattcgacaggttttgcccgctttgactgggtttggttatgggtttgagtttttcccgattttcaaa-acgagtatgggacaggta 365  Q
    ||||||||||| | |||| ||| |||||| |||| ||||||||||||||| ||||||| || ||||| ||| || || ||| ||| ||||||||| ||||    
T  10208378 cccgaaccaaagttaatttgac-ggttttccccgttttgactgggtttgggtatgggtatgggttttccccaatcttaaaacacgggtatgggacgggta 10208476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #36
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 261 - 340
Target Start/End: Original strand, 18106059 - 18106139
Alignment:
Q  261 tacccacccgaaccaaactcaattc-gacaggttttgcccgctttgactgggtttggttatgggtttgagtttttcccgat 340  Q
    ||||| |||||| |||||||||||  ||| | |||| |||| ||||||||||||||| ||||||| || ||||| ||||||    
T  18106059 tacccgcccgaatcaaactcaattttgacggattttccccgttttgactgggtttggatatgggtatgggttttccccgat 18106139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #37
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 271 - 335
Target Start/End: Original strand, 37309695 - 37309759
Alignment:
Q  271 aaccaaactcaattcgacaggttttgcccgctttgactgggtttggttatgggtttgagtttttc 335  Q
    ||||||| |||||| ||  |||||| ||||||||||||  |||||| |||| |||||||||||||    
T  37309695 aaccaaattcaatttgatgggtttttcccgctttgactaagtttgggtatgagtttgagtttttc 37309759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #38
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 268 - 324
Target Start/End: Complemental strand, 45115701 - 45115645
Alignment:
Q  268 ccgaaccaaactcaattcgacaggttttgcccgctttgactgggtttggttatgggt 324  Q
    ||||||||||  ||||| ||| |||||| |||| ||||||||||||||| |||||||    
T  45115701 ccgaaccaaatccaatttgacgggttttccccgttttgactgggtttgggtatgggt 45115645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 58; Significance: 4e-24; HSPs: 39)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 290 - 551
Target Start/End: Original strand, 41476922 - 41477188
Alignment:
Q  290 ggttttgcccgctttgactgggtttggttatgggtttgagtttttcccgattttcaaa-acgagtatgggacaggtaacggggat----gtactcatccc 384  Q
    |||||| ||||||||||||| |||||  |||| ||||| ||||||  |||||   ||| ||||||| ||||| | ||||| ||||    |||| || |||    
T  41476922 ggtttttcccgctttgactgagtttgaatatgagtttgggtttttttcgattggaaaatacgagtacgggacggataacgtggatatatgtacccacccc 41477021  T
Q  385 gaatccatactcaaactcgtacctaatgtagaaaatcattttaataccccttttctataaataaaaatcgaaaccctaaatcatttcactcacatagtca 484  Q
    |||||||||| ||||| ||| || || | ||||||||| |||  ||||| |||| |||||| | |||| |||||||||||| |||||| ||||| |||||    
T  41477022 gaatccatacccaaacccgtcccgaaagcagaaaatcaatttgttaccctttttatataaagagaaatggaaaccctaaattatttcattcacacagtca 41477121  T
Q  485 aagtctcgttcatttagttgacactctcttatcaaagttctcttttatctccttccatatctcacac 551  Q
    |||||||  || || || |||||| | ||||||| | |||||||||||| |||| ||||| ||||||    
T  41477122 aagtctccgtctttcagatgacacccacttatcataattctcttttatcccctttcatatttcacac 41477188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 261 - 427
Target Start/End: Original strand, 19572453 - 19572624
Alignment:
Q  261 tacccacccgaaccaaactcaattcgacaggttttgcccgctttgactgggtttggttatgggtttgagtttttcccgattttcaaa-acgagtatggga 359  Q
    ||||| ||||||||||||  |||| ||| |||||| |||  ||||||||||||||| ||||||| || ||||||||||||||  ||| ||| ||||||||    
T  19572453 tacccgcccgaaccaaacctaatttgacgggttttccccattttgactgggtttgggtatgggtatgggtttttcccgatttcaaaacacgggtatggga 19572552  T
Q  360 caggtaacggggat----gtactcatcccgaatccatactcaaactcgtacctaatgtagaaaatcatttta 427  Q
    ||||||||||| ||    |||| || |||||| ||||||||| || ||| || |||||| ||||| ||||||    
T  19572553 caggtaacgggtatataggtacccaccccgaacccatactcatacccgtcccaaatgtaaaaaattatttta 19572624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 321 - 551
Target Start/End: Complemental strand, 39219346 - 39219111
Alignment:
Q  321 gggtttgagtttttcccgattttcaaa-acgagtatgggacaggtaacggggat----gtactcatcccgaatccatactcaaactcgtacctaatgtag 415  Q
    ||||||| ||||| ||||||||| ||| ||| ||| || ||| |||||||||||    |||| || |||||| |||||| ||||||||| |  |||||||    
T  39219346 gggtttgggttttccccgattttaaaacacgggtacggaacaagtaacggggatacatgtacccaccccgaacccatacccaaactcgttctaaatgtag 39219247  T
Q  416 aaaatcattttaataccccttttctataaataaaaatcgaaaccctaaatcatttcactcacatagtcaaagtctcgttcatttagttgacactctctta 515  Q
    ||||| | |||| |||| ||||| |||||||| |||   ||||||||||||||||| |||||| ||||| |||||| ||  || |  |||||||| ||||    
T  39219246 aaaattaatttattacctcttttatataaatagaaactcaaaccctaaatcatttcgctcacacagtcacagtctcattttttcatatgacactcactta 39219147  T
Q  516 tcaaagttctcttttatctccttccatatctcacac 551  Q
    ||| |||| |||  | ||||||| |||||| |||||    
T  39219146 tcatagttatctcctttctcctttcatatcgcacac 39219111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 180 - 259
Target Start/End: Original strand, 41138886 - 41138965
Alignment:
Q  180 aagatgtgtgacacccttgcatgtttaattaattattgtattttaattagaaactaataagtggggtttagggtgttaca 259  Q
    |||||||||||||||| ||||||||||||| ||| ||||||||| |||| ||| |||||  |||||||||||||||||||    
T  41138886 aagatgtgtgacacccatgcatgtttaattcattcttgtatttttattataaaataatatatggggtttagggtgttaca 41138965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 409 - 551
Target Start/End: Complemental strand, 13692640 - 13692497
Alignment:
Q  409 aatgtagaaaatca-ttttaataccccttttctataaataaaaatcgaaaccctaaatcatttcactcacatagtcaaagtctcgttcatttagttgaca 507  Q
    |||||||||||||| ||||| || ||||||| |||||||| ||| | ||||||||||||||||||| |||| | | | |||||   || || ||  ||||    
T  13692640 aatgtagaaaatcaattttattatcccttttatataaatagaaaccaaaaccctaaatcatttcacccacacaattagagtcttactctttcagacgaca 13692541  T
Q  508 ctctcttatcaaagttctcttttatctccttccatatctcacac 551  Q
    ||| ||||| | |||||||| || ||||||||||||||||||||    
T  13692540 ctcacttattatagttctctcttttctccttccatatctcacac 13692497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 261 - 427
Target Start/End: Original strand, 24236702 - 24236873
Alignment:
Q  261 tacccacccgaaccaaactcaattcgacaggttttgcccgctttgactgggtttggttatgggtttgagtttttcccgattttcaaa-acgagtatggga 359  Q
    ||||| |||||||||||||||||| ||| |||||| |||| ||||||||||||| | ||||||| || ||||| |||||| |  ||| ||| |||||| |    
T  24236702 tacccgcccgaaccaaactcaatttgacgggtttttcccgttttgactgggtttaggtatgggtatgggttttccccgatctcaaaacacgggtatggaa 24236801  T
Q  360 caggtaacggggat----gtactcatcccgaatccatactcaaactcgtacctaatgtagaaaatcatttta 427  Q
    | || |||||| ||    |||| || |||||| |||||||||||| ||| || |||||| ||||| ||||||    
T  24236802 cggggaacgggtatataggtacccaccccgaacccatactcaaacccgtcccaaatgtaaaaaattatttta 24236873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 261 - 370
Target Start/End: Original strand, 36187161 - 36187271
Alignment:
Q  261 tacccacccgaaccaaactcaattcgacaggttttgcccgctttgactgggtttggttatgggtttgagtttttcccgattttcaaa-acgagtatggga 359  Q
    ||||| |||||||||||||||||| | | |||||| |||| ||||||||||||||| ||||||| || ||||| |||||| |  ||| ||| ||||||||    
T  36187161 tacccgcccgaaccaaactcaatttggcgggttttccccgttttgactgggtttgggtatgggtatgggttttccccgatctcaaaacacgggtatggga 36187260  T
Q  360 caggtaacggg 370  Q
    | |||||||||    
T  36187261 cgggtaacggg 36187271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 279 - 371
Target Start/End: Original strand, 10778526 - 10778619
Alignment:
Q  279 tcaattcgacaggttttgcccgctttgactgggtttggttatgggtttgagtttttcccgattttcaaa-acgagtatgggacaggtaacgggg 371  Q
    |||||| ||| ||||||  ||||||||||||||||||| |||| |||| |||||||||||||||  ||| ||| ||||||||| ||||||||||    
T  10778526 tcaatttgacgggttttttccgctttgactgggtttgggtatgagtttaagtttttcccgatttcaaaacacgggtatgggacgggtaacgggg 10778619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 99 - 259
Target Start/End: Complemental strand, 12784577 - 12784418
Alignment:
Q  99 atgtgaaaagttactttgatgttttgagaacttttcgacaacgacgtttttaatattaaacgaagtactttttgaatgattaagatgtgtgacacccttg 198  Q
    ||||||||| | |||||||||||  |||||||||||  |  ||| |||| |||| |||||||||||| ||||  | |||  |||||||||||||||||||    
T  12784577 atgtgaaaaatcactttgatgttacgagaacttttccgctgcgatgtttataat-ttaaacgaagtattttt--attgaagaagatgtgtgacacccttg 12784481  T
Q  199 catgttta-attaattattgtattttaattagaaactaataagtgggg-tttagggtgttaca 259  Q
    ||||||||  ||  ||| |||||||| |||| ||| ||||| |||||| ||||||||||||||    
T  12784480 catgtttattttttttaatgtatttttattataaaataatatgtggggatttagggtgttaca 12784418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 264 - 370
Target Start/End: Complemental strand, 24710992 - 24710885
Alignment:
Q  264 ccacccgaaccaaactcaattcgacaggttttgcccgctttgactgggtttggttatgggtttgagtttttcccgattttcaaa-acgagtatgggacag 362  Q
    |||||||||||||| |||||| ||| |||||| |||| ||||||||||||||| |||| || || ||||| |||||| |  ||| ||| ||||||||| |    
T  24710992 ccacccgaaccaaattcaatttgacgggttttccccgttttgactgggtttggatatgagtatgggttttccccgatctcaaaacacgggtatgggacgg 24710893  T
Q  363 gtaacggg 370  Q
    ||||||||    
T  24710892 gtaacggg 24710885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 302 - 470
Target Start/End: Original strand, 33293513 - 33293675
Alignment:
Q  302 tttgactgggtttggttatgggtttgagtttttcccgattttcaaa-acgagtatgggacaggtaacggggatgtactcatcccgaatccatactcaaac 400  Q
    ||||| ||||||||| |||| ||||| ||||||||||||||  ||| ||| ||||||||| ||||| |||||| ||        ||| |||||| |||||    
T  33293513 tttgattgggtttgggtatgagtttgggtttttcccgatttcaaaacacgggtatgggacgggtaatggggatatag-------gaacccatacccaaac 33293605  T
Q  401 tcgtacctaatgtagaaaatcattttaataccccttttctataaataaaaatcgaaaccctaaatcattt 470  Q
    |||| || |||||||||||||| |||| ||||| |||| ||| |||| |||   ||||||||||||||||    
T  33293606 tcgttccgaatgtagaaaatcaatttagtacccattttatatcaatagaaactcaaaccctaaatcattt 33293675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 261 - 367
Target Start/End: Original strand, 44615416 - 44615523
Alignment:
Q  261 tacccacccgaaccaaactcaattcgacaggttttgcccgctttgactgggtttggttatgggtttgagtttttcccgattttcaaa-acgagtatggga 359  Q
    |||||||||  ||||||||||||| ||| |||||| |||| ||||||||||||||| |||| ||||| ||||| || |||||  ||| ||| ||||||||    
T  44615416 tacccacccagaccaaactcaatttgacgggtttttcccgttttgactgggtttgggtatgagtttgggttttccctgatttaaaaacacgggtatggga 44615515  T
Q  360 caggtaac 367  Q
    | ||||||    
T  44615516 cgggtaac 44615523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 261 - 367
Target Start/End: Complemental strand, 44793153 - 44793046
Alignment:
Q  261 tacccacccgaaccaaactcaattcgacaggttttgcccgctttgactgggtttggttatgggtttgagtttttcccgattttcaaa-acgagtatggga 359  Q
    |||||||||  ||||||||||||| ||| |||||| |||| ||||||||||||||| |||| ||||| ||||| || |||||  ||| ||| ||||||||    
T  44793153 tacccacccagaccaaactcaatttgacgggtttttcccgttttgactgggtttgggtatgagtttgggttttccctgatttaaaaacacgggtatggga 44793054  T
Q  360 caggtaac 367  Q
    | ||||||    
T  44793053 cgggtaac 44793046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 261 - 370
Target Start/End: Complemental strand, 5181187 - 5181077
Alignment:
Q  261 tacccacccgaaccaaactcaattcgacaggttttgcccgctttgactgggtttggttatgggtttgagtttttcccgattttcaaa-acgagtatggga 359  Q
    ||||| ||||||||||| |||||| ||| |||||| |||  ||||||||||||| | ||||||| || ||||| ||||||||  ||| ||| ||||||||    
T  5181187 tacccgcccgaaccaaattcaatttgacgggttttccccattttgactgggtttaggtatgggtatgggttttccccgatttcaaaatacgggtatggga 5181088  T
Q  360 caggtaacggg 370  Q
    | |||||||||    
T  5181087 cgggtaacggg 5181077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 449 - 551
Target Start/End: Original strand, 25154961 - 25155063
Alignment:
Q  449 aaatcgaaaccctaaatcatttcactcacatagtcaaagtctcgttcatttagttgacactctcttatcaaagttctcttttatctccttccatatctca 548  Q
    ||||| ||||| ||||| ||||||||  ||  || | ||||||| |||||||| |||||||| ||||||| ||||||||||| ||||||| || ||||||    
T  25154961 aaatccaaaccttaaattatttcactatcactgtgagagtctcggtcatttagatgacactcacttatcatagttctcttttttctcctttcaaatctca 25155060  T
Q  549 cac 551  Q
    |||    
T  25155061 cac 25155063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 374 - 547
Target Start/End: Complemental strand, 36421796 - 36421623
Alignment:
Q  374 gtactcatcccgaatccatactcaaactcgtacctaatgtagaaaatcattttaataccccttttctataaataaaaa-tcgaaaccctaaatcatttca 472  Q
    ||||||| ||||||   |||| |||||||||  | ||| |||||||||| |||| || |||| || |||||||||||| ||| ||| |||||||||||||    
T  36421796 gtactcaccccgaacttatacccaaactcgtctcgaatatagaaaatcaatttattatccctcttatataaataaaaactcg-aactctaaatcatttca 36421698  T
Q  473 ctcacatagtcaaagtctcgttcatttagttgacactctcttatcaaagttctcttttatctccttccatatctc 547  Q
     ||||| ||||| ||||||  || || || || || || ||||||| |||||||| || ||||||| ||||||||    
T  36421697 ttcacacagtcagagtctcaatctttcagatggcaatcacttatcatagttctctcttttctcctttcatatctc 36421623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 409 - 551
Target Start/End: Original strand, 42729038 - 42729180
Alignment:
Q  409 aatgtagaaaatcattttaataccccttttctataaataaaaatcgaaaccctaaatcatttcactcacatagtcaaagtctcgttcatttagttgacac 508  Q
    |||||||||||| | ||||  | ||||||| |||||||| |||   | || ||||||||||||||||||| ||||| ||||||  || || || | ||||    
T  42729038 aatgtagaaaataaatttatcatcccttttatataaatagaaacttatacactaaatcatttcactcacacagtcagagtctcagtctttcagataacac 42729137  T
Q  509 tctcttatcaaagttctcttttatctccttccatatctcacac 551  Q
     | ||||||| |||||||| || ||||||||||||| ||||||    
T  42729138 ccacttatcatagttctctcttgtctccttccatatatcacac 42729180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 183 - 260
Target Start/End: Original strand, 29447643 - 29447720
Alignment:
Q  183 atgtgtgacacccttgcatgtttaattaattattgtattttaattagaaactaataagtggggtttagggtgttacaa 260  Q
    ||||||||||||||| | ||||||||||||||||||||||| |||  ||| |||||  ||| | ||||||||||||||    
T  29447643 atgtgtgacacccttacgtgtttaattaattattgtatttttatttaaaaataatatatggagattagggtgttacaa 29447720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 267 - 340
Target Start/End: Original strand, 49250720 - 49250793
Alignment:
Q  267 cccgaaccaaactcaattcgacaggttttgcccgctttgactgggtttggttatgggtttgagtttttcccgat 340  Q
    ||||||||||| |||||| ||| ||||||  ||| ||||||||||||||| ||||||| |||||||| ||||||    
T  49250720 cccgaaccaaattcaatttgacgggttttctccgttttgactgggtttgggtatgggtatgagttttccccgat 49250793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 261 - 370
Target Start/End: Original strand, 18354021 - 18354131
Alignment:
Q  261 tacccacccgaaccaaactcaattcgacaggttttgcccgctttgactgggtttggttatgggtttgagtttttcccgattttcaaaac--gagtatggg 358  Q
    ||||| ||||||||||| |||||| ||| |||||| |||| ||||||||| ||||  ||||||| || ||||| ||||| |||||||||  | |||||||    
T  18354021 tacccgcccgaaccaaattcaatttgacgggtttttcccgttttgactggatttgaatatgggtatgggttttccccga-tttcaaaacatgggtatggg 18354119  T
Q  359 acaggtaacggg 370  Q
    || |||||||||    
T  18354120 acgggtaacggg 18354131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 298 - 426
Target Start/End: Complemental strand, 34085346 - 34085213
Alignment:
Q  298 ccgctttgactgggtttggttatgggtttgagtttttcccgattttcaaa-acgagtatgggacaggtaacgggg----atgtactcatcccgaatccat 392  Q
    |||||||||||||||| || |||| ||||| ||||||||||||||  ||| ||||||||||||  ||||||||||    |||||| || |||||| ||||    
T  34085346 ccgctttgactgggttaggatatgagtttgggtttttcccgatttcaaaacacgagtatgggatgggtaacggggttatatgtacccaccccgaacccat 34085247  T
Q  393 actcaaactcgtacctaatgtagaaaatcatttt 426  Q
    || || |||||| |  |||||| ||||| |||||    
T  34085246 acccatactcgtcctaaatgtaaaaaattatttt 34085213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 261 - 340
Target Start/End: Complemental strand, 51422006 - 51421927
Alignment:
Q  261 tacccacccgaaccaaactcaattcgacaggttttgcccgctttgactgggtttggttatgggtttgagtttttcccgat 340  Q
    ||||| |||||||||||| ||||| ||  |||||| |||  ||||||||||||||| ||||||| || ||||||||||||    
T  51422006 tacccgcccgaaccaaacccaatttgatgggttttccccattttgactgggtttgggtatgggtatgggtttttcccgat 51421927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 424 - 550
Target Start/End: Complemental strand, 8880428 - 8880302
Alignment:
Q  424 tttaataccccttttctataaataaaaatcgaaaccctaaatcatttcactcacatagtcaaagtctcgttcatttagttgacactctcttatcaaagtt 523  Q
    |||| |||||||||| |||||||| |||   ||||  |||||||||||||||||| ||| | |||| |  || || ||||||||||   |||||| | ||    
T  8880428 tttattaccccttttttataaatagaaactcaaactttaaatcatttcactcacaaagttagagtcgcagtctttcagttgacacttatttatcataatt 8880329  T
Q  524 ctcttttatctccttccatatctcaca 550  Q
    |||| || |||||||||||||||||||    
T  8880328 ctctcttttctccttccatatctcaca 8880302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 268 - 342
Target Start/End: Complemental strand, 13020734 - 13020660
Alignment:
Q  268 ccgaaccaaactcaattcgacaggttttgcccgctttgactgggtttggttatgggtttgagtttttcccgattt 342  Q
    ||||||||||||||||  ||| ||||||  |||  |||||||||||||||||||||| || ||||| ||||||||    
T  13020734 ccgaaccaaactcaatctgacgggttttctccgtcttgactgggtttggttatgggtatgggttttccccgattt 13020660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 261 - 370
Target Start/End: Original strand, 23490712 - 23490822
Alignment:
Q  261 tacccacccgaaccaaactcaattcgacaggttttgcccgctttgactgggtttggttatgggtttgagtttttcccgattttcaaa-acgagtatggga 359  Q
    ||||| |||||||||||  ||||| ||| |||||| || | ||||||||||||||| ||||||| || ||||| |||||| |  ||| ||| ||||||||    
T  23490712 tacccgcccgaaccaaatccaatttgacgggtttttcctgttttgactgggtttgggtatgggtatgggttttccccgatctcgaaacacgggtatggga 23490811  T
Q  360 caggtaacggg 370  Q
    | |||||||||    
T  23490812 cgggtaacggg 23490822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 261 - 342
Target Start/End: Complemental strand, 12495158 - 12495077
Alignment:
Q  261 tacccacccgaaccaaactcaattcgacaggttttgcccgctttgactgggtttggttatgggtttgagtttttcccgattt 342  Q
    |||||||| ||||||||  ||||| ||| | |||| ||| |||||||||||||| | |||||||||  ||||||||||||||    
T  12495158 tacccacctgaaccaaatccaatttgacggattttccccactttgactgggtttcggtatgggttttggtttttcccgattt 12495077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 261 - 342
Target Start/End: Complemental strand, 13390544 - 13390464
Alignment:
Q  261 tacccacccgaaccaaactcaattcgacaggttttgcccgctttgactgggtttggttatgggtttgagtttttcccgattt 342  Q
    ||||| |||||||||||| ||||| ||| |||||  |||| ||||||||||||||| ||||||| ||| |||| ||||||||    
T  13390544 tacccgcccgaaccaaacccaatttgacgggtttc-cccgttttgactgggtttgggtatgggtatgaattttccccgattt 13390464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 186 - 223
Target Start/End: Original strand, 20932245 - 20932282
Alignment:
Q  186 tgtgacacccttgcatgtttaattaattattgtatttt 223  Q
    ||||||||||||||||||||||||||||||| ||||||    
T  20932245 tgtgacacccttgcatgtttaattaattattttatttt 20932282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 270 - 342
Target Start/End: Complemental strand, 13798377 - 13798305
Alignment:
Q  270 gaaccaaactcaattcgacaggttttgcccgctttgactgggtttggttatgggtttgagtttttcccgattt 342  Q
    ||||||||| |||||  || |||||| |||| | ||||||||||||| |||| ||||| ||||||||||||||    
T  13798377 gaaccaaacccaatttaacgggttttccccggtatgactgggtttgggtatgagtttgggtttttcccgattt 13798305  T

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Target: chr1; HSP #30
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 261 - 325
Target Start/End: Complemental strand, 20774714 - 20774650
Alignment:
Q  261 tacccacccgaaccaaactcaattcgacaggttttgcccgctttgactgggtttggttatgggtt 325  Q
    ||||| |||||||||||| ||||| ||| | |||| |||| ||||||||||||||| ||||||||    
T  20774714 tacccgcccgaaccaaacccaatttgacggattttccccgttttgactgggtttgggtatgggtt 20774650  T

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Target: chr1; HSP #31
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 175 - 259
Target Start/End: Complemental strand, 52272075 - 52271991
Alignment:
Q  175 tgattaagatgtgtgacacccttgcatgtttaattaattattgtattttaattagaaactaataagtggggtttagggtgttaca 259  Q
    |||| |||||||||||||||||||| || || | |||||||| |||||| |||||||| | |||   | ||||||||||||||||    
T  52272075 tgatgaagatgtgtgacacccttgcgtgctttaataattattatatttttattagaaaatgatatacgtggtttagggtgttaca 52271991  T

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Target: chr1; HSP #32
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 269 - 367
Target Start/End: Complemental strand, 16409082 - 16408983
Alignment:
Q  269 cgaaccaaactcaattcgacaggttttgcccgctttgactgggtttggttatgggtttgagtttttcccgattttcaaa-acgagtatgggacaggtaac 367  Q
    |||| ||||| ||||| ||| |||||| |||| ||||||||||||||| ||||||| || ||||| ||| ||||  ||| ||| ||||||||| ||||||    
T  16409082 cgaatcaaacccaatttgacgggttttccccgttttgactgggtttgggtatgggtatgggttttccccaatttcaaaacacgggtatgggacgggtaac 16408983  T

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Target: chr1; HSP #33
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 183 - 214
Target Start/End: Original strand, 20932284 - 20932315
Alignment:
Q  183 atgtgtgacacccttgcatgtttaattaatta 214  Q
    ||||||||||||||||||||||||||||||||    
T  20932284 atgtgtgacacccttgcatgtttaattaatta 20932315  T

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Target: chr1; HSP #34
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 382 - 473
Target Start/End: Original strand, 48125750 - 48125841
Alignment:
Q  382 cccgaatccatactcaaactcgtacctaatgtagaaaatcattttaataccccttttctataaataaaaatcgaaaccctaaatcatttcac 473  Q
    |||||| |||||| |||||||||  | |||||||||||||| |||| |||| ||||| |||||||| |||   |||| |||||| |||||||    
T  48125750 cccgaacccatacccaaactcgtcgcgaatgtagaaaatcaatttactaccgcttttatataaatagaaactcaaactctaaattatttcac 48125841  T

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Target: chr1; HSP #35
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 180 - 260
Target Start/End: Original strand, 23634134 - 23634218
Alignment:
Q  180 aagatgtgtgacacccttgcatgtttaa---ttaattattgtattttaattagaaactaataagtggg-gtttagggtgttacaa 260  Q
    ||||||||||||||||||||||||||||   ||  ||| |||||||| |||| ||| ||||| |||||  |||||||||||||||    
T  23634134 aagatgtgtgacacccttgcatgtttaatttttttttaatgtatttttattataaaataatatgtgggtttttagggtgttacaa 23634218  T

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Target: chr1; HSP #36
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 390 - 551
Target Start/End: Complemental strand, 25181218 - 25181056
Alignment:
Q  390 catactcaaactcgtacctaatgtagaaaatcattttaataccccttttctataaataaaaatcgaaaccct-aaatcatttcactcacatagtcaaagt 488  Q
    ||||||||||||||| || | |||| ||| ||| |||| || ||||| | |||||||| ||| | |||| || |||| |||||||||||||||| | |||    
T  25181218 catactcaaactcgtcccaattgtaaaaagtcaatttactatcccttctatataaatagaaacctaaactcttaaataatttcactcacatagttagagt 25181119  T
Q  489 ctcgttcatttagttgacactctcttatcaaagttctcttttatctccttccatatctcacac 551  Q
    ||   || || || ||| |||| ||||| | | |||| | || ||||||||||||||||||||    
T  25181118 ctttgtctttcagatgatactcacttattacaattctttcttttctccttccatatctcacac 25181056  T

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Target: chr1; HSP #37
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 261 - 370
Target Start/End: Original strand, 34673223 - 34673333
Alignment:
Q  261 tacccacccgaaccaaactcaattcgacaggttttgcccgctttgactgggtttggttatgggtttgagtttttcccgattttcaaa-acgagtatggga 359  Q
    ||||| |||||||||||| |||||  || | |||| |||  ||| ||||||||||| |||||||||| ||||||||| ||||  ||| ||| ||||| ||    
T  34673223 tacccgcccgaaccaaacccaatttaacggattttccccattttaactgggtttgggtatgggtttgggtttttcccaatttcaaaacacgggtatgaga 34673322  T
Q  360 caggtaacggg 370  Q
    | |||||||||    
T  34673323 ctggtaacggg 34673333  T

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Target: chr1; HSP #38
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 261 - 342
Target Start/End: Complemental strand, 39616440 - 39616359
Alignment:
Q  261 tacccacccgaaccaaactcaattcgacaggttttgcccgctttgactgggtttggttatgggtttgagtttttcccgattt 342  Q
    ||||| |||||||||||||||||| |||  ||||| |||| |||||||| |||||| |||| || || ||||| ||| ||||    
T  39616440 tacccgcccgaaccaaactcaatttgacgagttttccccgttttgactgagtttgggtatgagtatgggttttcccctattt 39616359  T

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Target: chr1; HSP #39
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 379 - 483
Target Start/End: Complemental strand, 23719627 - 23719524
Alignment:
Q  379 catcccgaatccatactcaaactcgtacctaatgtagaaaatcattttaataccccttttctataaataaaaatcgaaaccctaaatcatttcactcaca 478  Q
    |||||||||  ||||||||||||||| || ||||||  |||||| |||| ||||| |||| |||||||| |||   ||||  |||||||||||||| |||    
T  23719627 catcccgaactcatactcaaactcgtcccgaatgta-caaatcaatttactaccctttttatataaatagaaactcaaactataaatcatttcactaaca 23719529  T
Q  479 tagtc 483  Q
     ||||    
T  23719528 cagtc 23719524  T

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Target: scaffold0498 (Bit Score: 52; Significance: 2e-20; HSPs: 1)
Name: scaffold0498
Description:

Target: scaffold0498; HSP #1
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 180 - 259
Target Start/End: Complemental strand, 5178 - 5099
Alignment:
Q  180 aagatgtgtgacacccttgcatgtttaattaattattgtattttaattagaaactaataagtggggtttagggtgttaca 259  Q
    |||||||  ||||||||||||||||||||||||||||||||||| ||||| || ||||| ||||||||||| ||||||||    
T  5178 aagatgttggacacccttgcatgtttaattaattattgtatttttattagtaaataatatgtggggtttagcgtgttaca 5099  T

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Target: scaffold0103 (Bit Score: 49; Significance: 1e-18; HSPs: 1)
Name: scaffold0103
Description:

Target: scaffold0103; HSP #1
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 180 - 259
Target Start/End: Complemental strand, 16597 - 16520
Alignment:
Q  180 aagatgtgtgacacccttgcatgtttaattaattattgtattttaattagaaactaataagtggggtttagggtgttaca 259  Q
    ||||||||||||||||||| |||||||||||||||||||||||| |||||||| |||||  || || |||||||||||||    
T  16597 aagatgtgtgacacccttgtatgtttaattaattattgtatttttattagaaaataata--tgtggattagggtgttaca 16520  T

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Target: scaffold1322 (Bit Score: 47; Significance: 2e-17; HSPs: 1)
Name: scaffold1322
Description:

Target: scaffold1322; HSP #1
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 409 - 551
Target Start/End: Complemental strand, 1105 - 964
Alignment:
Q  409 aatgtagaaaatcattttaataccccttttctataaataaaaatcgaaaccctaaatcatttcactcacatagtcaaagtctcgttcatttagttgacac 508  Q
    |||||||||||| | |||| ||||| |||| |||||||| |||   ||| | ||||||||||||||||| | ||||||||||| ||| || || |||||     
T  1105 aatgtagaaaattaatttattacccattttatataaatagaaactcaaatcttaaatcatttcactcacgtggtcaaagtctcattctttaagatgacaa 1006  T
Q  509 tctcttatcaaagttctcttttatctccttccatatctcacac 551  Q
    || ||||||| | ||||||||| ||||||| ||||||||||||    
T  1005 tcacttatcataattctctttt-tctcctttcatatctcacac 964  T

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Target: scaffold0014 (Bit Score: 38; Significance: 0.000000000004; HSPs: 1)
Name: scaffold0014
Description:

Target: scaffold0014; HSP #1
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 261 - 342
Target Start/End: Original strand, 14125 - 14206
Alignment:
Q  261 tacccacccgaaccaaactcaattcgacaggttttgcccgctttgactgggtttggttatgggtttgagtttttcccgattt 342  Q
    ||||||||| |||||||| ||||| ||| |||||| |||| ||||  ||||||||| |||| ||||||||||| ||||||||    
T  14125 tacccacccaaaccaaacccaatttgacgggtttttcccgttttgtttgggtttgggtatgagtttgagttttccccgattt 14206  T

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Target: scaffold0022 (Bit Score: 34; Significance: 0.0000000009; HSPs: 1)
Name: scaffold0022
Description:

Target: scaffold0022; HSP #1
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 261 - 326
Target Start/End: Complemental strand, 90738 - 90673
Alignment:
Q  261 tacccacccgaaccaaactcaattcgacaggttttgcccgctttgactgggtttggttatgggttt 326  Q
    ||||| ||||||| |||||||||| ||| | |||| |||| ||||||||||||||| |||||||||    
T  90738 tacccgcccgaactaaactcaatttgacggattttccccgttttgactgggtttgggtatgggttt 90673  T

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Target: scaffold0024 (Bit Score: 32; Significance: 0.00000001; HSPs: 2)
Name: scaffold0024
Description:

Target: scaffold0024; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 161 - 232
Target Start/End: Complemental strand, 108498 - 108427
Alignment:
Q  161 aagtactttttgaatgattaagatgtgtgacacccttgcatgtttaattaattattgtattttaattagaaa 232  Q
    ||||||||||  | |||| |||||||||||||||||||| || || | |||||||| |||||| ||||||||    
T  108498 aagtacttttgaattgatgaagatgtgtgacacccttgcgtgctttaataattattatatttttattagaaa 108427  T

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Target: scaffold0024; HSP #2
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 161 - 259
Target Start/End: Complemental strand, 106129 - 106031
Alignment:
Q  161 aagtactttttgaatgattaagatgtgtgacacccttgcatgtttaattaattattgtattttaattagaaactaataagtggggtttagggtgttaca 259  Q
    ||||||||||  | |||| ||||||||| |||||||||  |  || | |||||||| |||||| |||||||| | ||| | ||||||||||||||||||    
T  106129 aagtacttttgaattgatgaagatgtgttacacccttgtgtactttaataattattatatttttattagaaaatgatatggggggtttagggtgttaca 106031  T

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Target: scaffold0008 (Bit Score: 31; Significance: 0.00000006; HSPs: 2)
Name: scaffold0008
Description:

Target: scaffold0008; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 261 - 343
Target Start/End: Complemental strand, 67896 - 67814
Alignment:
Q  261 tacccacccgaaccaaactcaattcgacaggttttgcccgctttgactgggtttggttatgggtttgagtttttcccgatttt 343  Q
    ||||| ||| |||||| | | ||| |||||||||| |||| ||||||||||||||  ||||||||||  |||| |||||||||    
T  67896 tacccgcccaaaccaaccccgatttgacaggttttccccgatttgactgggtttgagtatgggtttggattttccccgatttt 67814  T

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Target: scaffold0008; HSP #2
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 261 - 343
Target Start/End: Complemental strand, 75739 - 75657
Alignment:
Q  261 tacccacccgaaccaaactcaattcgacaggttttgcccgctttgactgggtttggttatgggtttgagtttttcccgatttt 343  Q
    ||||| ||| |||||| | | ||| |||||||||| |||| ||||||||||||||  ||||||||||  |||| |||||||||    
T  75739 tacccgcccaaaccaaccccgatttgacaggttttccccgatttgactgggtttgagtatgggtttggattttccccgatttt 75657  T

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Target: scaffold0048 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0048
Description:

Target: scaffold0048; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 152 - 197
Target Start/End: Original strand, 69839 - 69884
Alignment:
Q  152 tattaaacgaagtactttttgaatgattaagatgtgtgacaccctt 197  Q
    ||||||| | ||||||||| ||||||| ||||||||||||||||||    
T  69839 tattaaatgtagtacttttggaatgataaagatgtgtgacaccctt 69884  T

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Target: scaffold0002 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 298 - 343
Target Start/End: Complemental strand, 449812 - 449767
Alignment:
Q  298 ccgctttgactgggtttggttatgggtttgagtttttcccgatttt 343  Q
    ||||||||||||||||||| | |||||||| ||||| |||||||||    
T  449812 ccgctttgactgggtttgggtttgggtttgggttttccccgatttt 449767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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