View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11721_low_17 (Length: 642)
Name: NF11721_low_17
Description: NF11721
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11721_low_17 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 594; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 594; E-Value: 0
Query Start/End: Original strand, 1 - 622
Target Start/End: Complemental strand, 42667198 - 42666577
Alignment:
| Q |
1 |
attctaagaaaaacaaacagaagacacttaactctgtttcgccgtcacaacatcatgtttcagctatgattatgtcaaaaacaaaggatgaggatttttc |
100 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42667198 |
attctaagaaaaacaaacagaagaaacttaactctgtttcgccgtcacaaaatcatgtttcagctatgattatgtcaaaaacaaaggatgaggatttttc |
42667099 |
T |
|
| Q |
101 |
tgtgattactggtaatgagtcgccattgaactcaatacctccaccgcctcctcctccacctccgttcaagatgccagcatggaagttcaaggtgcagggt |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42667098 |
tgtgattactggtaatgagtcgccattgaactcaatacctccaccgcctcctcctccacctccgttcaagatgccagcatggaagttcaaggtgcagggt |
42666999 |
T |
|
| Q |
201 |
gactttgttagaatagatagcattagtagttcaagttcggtagatatagatgaggaagtagtggagttaccaaccattagtggtgaagaaactggaattg |
300 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||| |
|
|
| T |
42666998 |
gactttgttagaatagatagcattagtagttcaagttcggtagatatagatgaggaagtagtggagttaccaaccattagtggcgaagaacctggaattg |
42666899 |
T |
|
| Q |
301 |
atctattggtgtatccaaatcccaaccccggtgttgataacaaagctggtagtttcattgaaagtttcagagctggtttaaggatggagaaaatgaattc |
400 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42666898 |
atctattggtgtatccaaatcccaaccccggtgttgataacaaagctggtagtttcattgaaagtttcagagctggtttaaggatggagaaaatgaattc |
42666799 |
T |
|
| Q |
401 |
tatgaagaagcaggggatggggaggtctaatctctatgatacccttcatcaccagaaccattaacaaaagaagaagctgaaagcattgtcttaagtcatt |
500 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42666798 |
tatgaagaagcaggggatggggaggtctaatctctatgatacccttcatcaccagaaccattaacaaaagaagaagctgaaagcattgtcttaagtcatt |
42666699 |
T |
|
| Q |
501 |
tttaattgatttgtttctgaagtgaattgttttgttctgatgtatacattgaattcaagttcatacgagtcatagtactgctcttttgcgagaggattct |
600 |
Q |
| |
|
|| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42666698 |
ttcaattgatttgtttcagaagtgaattgttttgttctgatgtatacattgaattcaagttcatacgagtcatagtactgctcttttgcgagaggattct |
42666599 |
T |
|
| Q |
601 |
ggctggcatatatagaactctt |
622 |
Q |
| |
|
|||||||||||||| ||||||| |
|
|
| T |
42666598 |
ggctggcatatatacaactctt |
42666577 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University