View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11721_low_18 (Length: 624)
Name: NF11721_low_18
Description: NF11721
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11721_low_18 |
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| [»] scaffold0472 (2 HSPs) |
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Alignment Details
Target: scaffold0472 (Bit Score: 130; Significance: 5e-67; HSPs: 2)
Name: scaffold0472
Description:
Target: scaffold0472; HSP #1
Raw Score: 130; E-Value: 5e-67
Query Start/End: Original strand, 1 - 145
Target Start/End: Original strand, 2545 - 2690
Alignment:
| Q |
1 |
gcaaatagttgacacactcgatatataagtaaatgagtgataaaattggaatgatgtgaagtgatcatacctggttagtgag-cccccttttacagtggt |
99 |
Q |
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| T |
2545 |
gcaaatagttgacacactcgatatataagtaaatgagtgataaaattggaatgatgtgaagtgatcatacctggttagtgagccccccttttacagtggt |
2644 |
T |
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| Q |
100 |
tagtcttataataaactccttgatggttgcaatattttctccgagc |
145 |
Q |
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| T |
2645 |
tagtcttataataagctccttgatggttacaatattttctccgagc |
2690 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0472; HSP #2
Raw Score: 130; E-Value: 5e-67
Query Start/End: Original strand, 143 - 292
Target Start/End: Original strand, 2724 - 2873
Alignment:
| Q |
143 |
agcagagtaaccaaccatccaaatagatgaggaaacctatcttgctttaatgagtctcatgtaagtaggaatgccacatttttatctgagtgtaatggaa |
242 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||| |||||||||||||| |
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| T |
2724 |
agcagagtaaccaaccatccaaatagatgaggaaacctatcttgctttagtgagtctcatgtaagcaggaatgccacatttttatttgagtgtaatggaa |
2823 |
T |
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| Q |
243 |
cccgacttggtagctatctagatgttggttgtgctttgagtcgaggagac |
292 |
Q |
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|||||||||||||||||||||||||||||| ||||||||||||| ||||| |
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| T |
2824 |
cccgacttggtagctatctagatgttggttatgctttgagtcgatgagac |
2873 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 38; Significance: 0.000000000004; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 353 - 430
Target Start/End: Original strand, 46227476 - 46227553
Alignment:
| Q |
353 |
aataataactaggacgccgacccgtgctatcgcacgggacaataatgggcacataacaatatcaatggaggaataata |
430 |
Q |
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| T |
46227476 |
aataataactagacggtcgacccgtgctatcgcacgggacagtaatggacacatttcattagcaatggaggaataata |
46227553 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 320 - 360
Target Start/End: Original strand, 11913853 - 11913892
Alignment:
| Q |
320 |
tgttgtaaaattaggcataaaattatctctataaataataa |
360 |
Q |
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|||||||||||||| |||||| ||||||||||||||||||| |
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| T |
11913853 |
tgttgtaaaattagacataaa-ttatctctataaataataa |
11913892 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 37; Significance: 0.00000000001; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 370 - 430
Target Start/End: Complemental strand, 14706670 - 14706610
Alignment:
| Q |
370 |
cgacccgtgctatcgcacgggacaataatgggcacataacaatatcaatggaggaataata |
430 |
Q |
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| T |
14706670 |
cgacccgtgctatcgcacgggacagtaatggacacatttcattagcaatggaggaataata |
14706610 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 318 - 360
Target Start/End: Complemental strand, 2433204 - 2433163
Alignment:
| Q |
318 |
attgttgtaaaattaggcataaaattatctctataaataataa |
360 |
Q |
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| T |
2433204 |
attgttgtaaaattaggcat-aaattatctctaaaaataataa |
2433163 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 35; Significance: 0.0000000002; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 318 - 360
Target Start/End: Original strand, 12877142 - 12877184
Alignment:
| Q |
318 |
attgttgtaaaattaggcataaaattatctctataaataataa |
360 |
Q |
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| T |
12877142 |
attgttgtaagattaggcataagattatctctataaataataa |
12877184 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 320 - 360
Target Start/End: Complemental strand, 15953201 - 15953161
Alignment:
| Q |
320 |
tgttgtaaaattaggcataaaattatctctataaataataa |
360 |
Q |
| |
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|||||||||||||| ||||| |||||||| ||||||||||| |
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|
| T |
15953201 |
tgttgtaaaattagacataagattatctcaataaataataa |
15953161 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 33; Significance: 0.000000004; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 370 - 430
Target Start/End: Complemental strand, 3506974 - 3506914
Alignment:
| Q |
370 |
cgacccgtgctatcgcacgggacaataatgggcacataacaatatcaatggaggaataata |
430 |
Q |
| |
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|||||||||||||||||||||||| |||||| ||||| || | |||||||||||||||| |
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|
| T |
3506974 |
cgacccgtgctatcgcacgggacagtaatggacacatttcatttgcaatggaggaataata |
3506914 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 320 - 360
Target Start/End: Complemental strand, 36050457 - 36050416
Alignment:
| Q |
320 |
tgttgtaaaatt-aggcataaaattatctctataaataataa |
360 |
Q |
| |
|
|||||||||||| ||||||| ||||||||||||||||||||| |
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| T |
36050457 |
tgttgtaaaatttaggcatacaattatctctataaataataa |
36050416 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 31; Significance: 0.00000006; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 322 - 360
Target Start/End: Original strand, 147000 - 147038
Alignment:
| Q |
322 |
ttgtaaaattaggcataaaattatctctataaataataa |
360 |
Q |
| |
|
||||||||||| |||||| |||||||||||||||||||| |
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|
| T |
147000 |
ttgtaaaattaagcataagattatctctataaataataa |
147038 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 320 - 360
Target Start/End: Complemental strand, 39197547 - 39197507
Alignment:
| Q |
320 |
tgttgtaaaattaggcataaaattatctctataaataataa |
360 |
Q |
| |
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|||||||| ||||||||||||||||| ||| |||||||||| |
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|
| T |
39197547 |
tgttgtaatattaggcataaaattatttctgtaaataataa |
39197507 |
T |
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Target: chr5 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 355 - 396
Target Start/End: Complemental strand, 8796099 - 8796058
Alignment:
| Q |
355 |
taataactaggacgccgacccgtgctatcgcacgggacaata |
396 |
Q |
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|||||||||| |||||||||||||||||||||||| ||||| |
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| T |
8796099 |
taataactagatcgccgacccgtgctatcgcacgggtcaata |
8796058 |
T |
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