View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11721_low_19 (Length: 623)
Name: NF11721_low_19
Description: NF11721
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11721_low_19 |
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Alignment Details
Target: chr4 (Bit Score: 528; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 528; E-Value: 0
Query Start/End: Original strand, 10 - 609
Target Start/End: Original strand, 28931937 - 28932537
Alignment:
| Q |
10 |
acatcaaatcaaatcaaagtttatcatcattcaaaatttgtaattaaattttatttgtannnnnnnnctgaagcactgtagtcttgttggaaaattggat |
109 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
28931937 |
acatcaaatcaaatcaaagtttatcatcattcaaaatttgtaattaaattttatttgtattttttttctgaagcactgtagtcttgttggaaaattggat |
28932036 |
T |
|
| Q |
110 |
aaacaagtttgaggtatacataaagcacaactaatgtgtagaaaagtcttcttacatgaacttttattgacgacctattttacgaatcatgaatcgcgtc |
209 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28932037 |
aaacaagtttgaggtatacataaagcacaactaatgtgtagaaaagtcttcttacatgaacttttattgacgacctattttacgaatcatgaatcgcgtc |
28932136 |
T |
|
| Q |
210 |
tcattatgaatctcaagatacataatcaataaaaatgtaacatttttt-aaggaaaaataagtgacgtaaacactataagttggtatatcgtatataaat |
308 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
28932137 |
tcattatgaatctcaagatacataatcaataaaaatgtaacatttttttaaggaaaaataagtgacgtaaaaactataagttggtatatcgtatataaat |
28932236 |
T |
|
| Q |
309 |
ctcaaaacaaaatggttgactacattaagttcaggttgtgattaatgtccacacacaacaannnnnnngaattggatttagttttgcatcaagttgagat |
408 |
Q |
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| T |
28932237 |
ctcaaaacaaaatggttgactacattaagttcaggttgtgattaatgtccacacacaacaatttttttgaattggatttagttttgcatcaagttgagat |
28932336 |
T |
|
| Q |
409 |
attgcttgtatatattttaagatactaataacacatctgtaccctttgctatttatatatgttattctttgtttgtttgtgtgactgaagtatttgattc |
508 |
Q |
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| T |
28932337 |
attgcttgtatatattttaagatactaataacacatctataccctttgctatttatatatgttattctttgtttgtttgtgtgactgaagtatttgattc |
28932436 |
T |
|
| Q |
509 |
ttatatattgccttgttattgagcttttggtttgcaacttggtatctcataatctattacgaataaattgacacattgtttggaatttgattagtagtta |
608 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
28932437 |
ttatatattgccttgttattgagcttttggtttgcaacttggtatctcgtaatctattgtgaataaattgacacattgtttggaatttgattagtagtta |
28932536 |
T |
|
| Q |
609 |
t |
609 |
Q |
| |
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| T |
28932537 |
t |
28932537 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 479 - 609
Target Start/End: Original strand, 10186791 - 10186921
Alignment:
| Q |
479 |
gtttgtttgtgtgactgaagtatttgattcttatatattgccttgttattgagcttttggtttgcaacttggtatctcataatctattacgaataaattg |
578 |
Q |
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| T |
10186791 |
gtttgtttgtgtggccaaagcttttgattcttctatattgccttgttattgaatttttggttaggaactcgatatcctttaatctattgtgaataacatg |
10186890 |
T |
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| Q |
579 |
acacattgtttggaatttgattagtagttat |
609 |
Q |
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||| || |||||||||||| |||| |||| |
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| T |
10186891 |
tcacgtttcttggaatttgatcagtaattat |
10186921 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 58; Significance: 4e-24; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 456 - 609
Target Start/End: Complemental strand, 35121677 - 35121524
Alignment:
| Q |
456 |
gctatttatatatgttattctttgtttgtttgtgtgactgaagtatttgattcttatatattgccttgttattgagcttttggtttgcaacttggtatct |
555 |
Q |
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||||||||| | ||| ||||||||||||||| || || ||| |||||||||| ||| ||||||||||||||| ||||||||| | ||||||||||| |
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| T |
35121677 |
gctatttatttgtgtgcttctttgtttgtttgagtagctaaagcttttgattcttctatgttgccttgttattgaacttttggttgggaacttggtatcc |
35121578 |
T |
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| Q |
556 |
cataatctattacgaataaattgacacattgtttggaatttgattagtagttat |
609 |
Q |
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| T |
35121577 |
cgtaatctattgtgaataacttgacacgtttcttggaatttgattagtaattat |
35121524 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 151 - 312
Target Start/End: Complemental strand, 35122049 - 35121885
Alignment:
| Q |
151 |
aaaagtcttcttacatgaacttttattgacgacctattttacgaatcatgaatcgcgtctcattatgaatctcaagatacataatcaataaaaatgtaac |
250 |
Q |
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||||||||||| |||||| |||||||||| ||| ||||| ||||||||||||| ||||||||||||||| |||||||||||||||||||| | || |
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| T |
35122049 |
aaaagtcttctaacatgaccttttattgaagactgattttccgaatcatgaatcatatctcattatgaatcttaagatacataatcaataaaagtagcac |
35121950 |
T |
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| Q |
251 |
a--ttttttaaggaaaaataagtgac-gtaaacactataagttggtatatcgtatataaatctca |
312 |
Q |
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| T |
35121949 |
agcatttttaagtaaaaataactgacaaaaaaaactataagctgatatatcatatataaatctca |
35121885 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 77 - 138
Target Start/End: Complemental strand, 35122146 - 35122082
Alignment:
| Q |
77 |
ctgaagcactgtagtcttgttggaaaattg---gataaacaagtttgaggtatacataaagcaca |
138 |
Q |
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||||||||||||||||||| ||| |||||| |||||||| |||||||||||| | |||||||| |
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| T |
35122146 |
ctgaagcactgtagtcttgatgggaaattgctagataaacatgtttgaggtataaacaaagcaca |
35122082 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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