View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11721_low_23 (Length: 549)
Name: NF11721_low_23
Description: NF11721
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11721_low_23 |
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Alignment Details
Target: chr6 (Bit Score: 358; Significance: 0; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 358; E-Value: 0
Query Start/End: Original strand, 1 - 528
Target Start/End: Original strand, 32872372 - 32872899
Alignment:
| Q |
1 |
agactataatagtcaacaacacaaagaagaagacatgacaaacttgnnnnnnntagcatccgttttcaaagggaaatggaaatgagaacagtgaaggatt |
100 |
Q |
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| T |
32872372 |
agactacaatagtcaacaacacagagaagaaggcatgacaaagttgaaaaaaatagcatccgttttgaaagggaaatggaaatcagaacagtgaaggatt |
32872471 |
T |
|
| Q |
101 |
cagtagaagttcatgaggcttgacttgacataggtgtttgttcgnnnnnnnagtaaaaattcatgaagcaattgaattttgcttgactgatttgtttgtt |
200 |
Q |
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| T |
32872472 |
cagtagaagttcatgaggcttgacttgacataggtgtttgttcgtttttttagtaaaaattcatgaagcaattgaattttgcttgactgatatgtttgtt |
32872571 |
T |
|
| Q |
201 |
tgatggcagtacaaacctactcttttagggcttttatttgttgtatctttggatatcatttagatattttggggacatgggacagatttagtattacata |
300 |
Q |
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| T |
32872572 |
tgatggcagtacaaacctactcttttagggcttttatttgttgtatctttgtatatcatttagatattttggggacatgggacagatttagtattaca-- |
32872669 |
T |
|
| Q |
301 |
aagcagtttaaccctctagatgtatctaccatatgtgtg----------tgtatatataagggattattttggttcaattataagggttttacaactgta |
390 |
Q |
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| T |
32872670 |
--------taaccttcgagatgtatctaccatgagtgtgtatatatatatatatatatatgggattattttggttcaattataagggttttacaactgta |
32872761 |
T |
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| Q |
391 |
tttaagggattcaaactcattatcttaaggttacaacactaagcacataacataatgtggtgttgtgtaagctcattttgatacaattataaggtataaa |
490 |
Q |
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| T |
32872762 |
tttaagggattcgaactcattatcttaaggttacaacactaagcacataacataatgtggtgttgtgtaagatcattttgatacaattataaggtataaa |
32872861 |
T |
|
| Q |
491 |
gtatgcggaagaagagtcctaaaaattgaataaatata |
528 |
Q |
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| T |
32872862 |
gtatacggaagaagagtcctaaaaattgaataaatata |
32872899 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 357 - 521
Target Start/End: Original strand, 32874649 - 32874813
Alignment:
| Q |
357 |
attttggttcaattataagggttttacaactgtatttaagggattcaaactcattatcttaaggttacaacactaagcacataacataatgtggtgttgt |
456 |
Q |
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| T |
32874649 |
attttgattcaattatgagggttttacaactctatttaagggattcgaactcaatatcttaaggttacaacactaagcacataaaataatgtggtgttgt |
32874748 |
T |
|
| Q |
457 |
gtaagctcattttgatacaattataaggtataaagtatgcggaagaagagtcctaaaaattgaat |
521 |
Q |
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| T |
32874749 |
gtaagctccttttgattcaattataaggtataaagtatgcagaaaaagcctcctaaaaattgaat |
32874813 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 378 - 480
Target Start/End: Original strand, 32874562 - 32874664
Alignment:
| Q |
378 |
ttttacaactgtatttaagggattcaaactcattatcttaaggttacaacactaagcacataacataatgtggtgttgtgtaagctcattttgatacaat |
477 |
Q |
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| T |
32874562 |
ttttacaactgtattcaaaggattcgaacacagtatcttaagattacaacactaagcacataaaatgatgcattgtttagtaagctcattttgattcaat |
32874661 |
T |
|
| Q |
478 |
tat |
480 |
Q |
| |
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||| |
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| T |
32874662 |
tat |
32874664 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 414 - 514
Target Start/End: Original strand, 32866381 - 32866481
Alignment:
| Q |
414 |
cttaaggttacaacactaagcacataacataatgtggtgttgtgtaagctcattttgatacaattataaggtataaagtatgcggaagaagagtcctaaa |
513 |
Q |
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| T |
32866381 |
cttaaggttacaaaactaatcacataaaatgatgtgatgttgcctaagcacattttgattcaattataagagataaagtatacggaaaaagcctcctaaa |
32866480 |
T |
|
| Q |
514 |
a |
514 |
Q |
| |
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| |
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|
| T |
32866481 |
a |
32866481 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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