View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11721_low_24 (Length: 543)

Name: NF11721_low_24
Description: NF11721
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11721_low_24
NF11721_low_24
[»] chr1 (11 HSPs)
chr1 (1-151)||(26885173-26885323)
chr1 (394-526)||(33053714-33053846)
chr1 (161-246)||(22580480-22580565)
chr1 (151-321)||(33054167-33054341)
chr1 (151-243)||(34059159-34059251)
chr1 (151-249)||(48666043-48666141)
chr1 (345-401)||(33053863-33053919)
chr1 (162-250)||(18391436-18391525)
chr1 (428-514)||(34059510-34059598)
chr1 (431-526)||(22580822-22580919)
chr1 (162-198)||(12372252-12372288)
[»] chr4 (3 HSPs)
chr4 (151-401)||(41501764-41502035)
chr4 (403-526)||(41501615-41501738)
chr4 (174-246)||(19140259-19140331)
[»] chr5 (3 HSPs)
chr5 (151-328)||(29635499-29635674)
chr5 (410-526)||(29635832-29635948)
chr5 (345-401)||(29635736-29635792)
[»] chr7 (2 HSPs)
chr7 (152-328)||(39052588-39052770)
chr7 (411-516)||(39052331-39052437)
[»] scaffold0049 (4 HSPs)
scaffold0049 (403-526)||(45493-45616)
scaffold0049 (206-327)||(45241-45360)
scaffold0049 (345-401)||(45411-45467)
scaffold0049 (318-350)||(45365-45397)
[»] scaffold0010 (1 HSPs)
scaffold0010 (151-320)||(251321-251496)
[»] chr8 (3 HSPs)
chr8 (151-247)||(3695190-3695286)
chr8 (428-523)||(3694851-3694946)
chr8 (274-319)||(3695114-3695159)
[»] chr3 (2 HSPs)
chr3 (174-246)||(678803-678875)
chr3 (425-526)||(678460-678565)


Alignment Details
Target: chr1 (Bit Score: 135; Significance: 4e-70; HSPs: 11)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 135; E-Value: 4e-70
Query Start/End: Original strand, 1 - 151
Target Start/End: Original strand, 26885173 - 26885323
Alignment:
Q  1 cgtatcaattcgacaaaaataattgtagacaaatataggtgtgacataaaacacaactaatttattttccatatttttgttaaattaactcctatcaaat 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||    
T  26885173 cgtatcaattcgacaaaaataattgtagacaaatataggtgtgacataaaacacaactaatttatttttcatatttttgttaaattaactcccatcaaat 26885272  T
Q  101 agctatctcatttcaataaaaataacaaagtcactatttcagtcatggaga 151  Q
    |||||||||||||||||||||| ||||||||||||||||||||| ||||||    
T  26885273 agctatctcatttcaataaaaaaaacaaagtcactatttcagtcgtggaga 26885323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 394 - 526
Target Start/End: Complemental strand, 33053846 - 33053714
Alignment:
Q  394 acctattcgctaccatctacaatcacgttgtagttctctctccatctcaaaaatcagttgcaataaaccaccaccatctccaccttatttcctcgtcctc 493  Q
    |||||| | |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||  |||||||    
T  33053846 acctatccactaccatctacaatcacgttttagttctctctccatctcaaaaatcagttgcaataaaccaccaccgtctccaccgtatttcgccgtcctc 33053747  T
Q  494 cgcggtcgtgcaaccacaaaggggtattcaaaa 526  Q
    ||  |||||||||||||||||||||||||||||    
T  33053746 cgacgtcgtgcaaccacaaaggggtattcaaaa 33053714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 161 - 246
Target Start/End: Original strand, 22580480 - 22580565
Alignment:
Q  161 gcacatagtgctgaggggatgcacttgccaaccctcaaaattaaattttttcacatatacccctatgttttttgcactttgaacct 246  Q
    ||||||||| || |||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||    
T  22580480 gcacatagtcctcaggggatgcacttgccaaccctcaaattttaattttttcacatatacccctatgttttttgcactttgaacct 22580565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 151 - 321
Target Start/End: Complemental strand, 33054341 - 33054167
Alignment:
Q  151 agtggcagaggcacatagtgctgaggggatgcacttgccaacc----ctcaaaattaaattttttcacatatacccctatgttttttgcactttgaacct 246  Q
    |||||| |||||||||||| |||||||||||||||||||||||    ||||||||||||   |||||||||||||| ||||||||||||||||| |||||    
T  33054341 agtggcggaggcacatagtactgaggggatgcacttgccaaccaaccctcaaaattaaaaaatttcacatatacccttatgttttttgcactttaaacct 33054242  T
Q  247 ccttatatannnnnnnnngcaccagctgacccaaaccgccctcact-tcactcatttacacattttaacttctctc 321  Q
    ||| ||||          |||| |||||||||||||| ||||||||  | ||||||||||||||||||||||||||    
T  33054241 cctcatat-tatttttttgcactagctgacccaaaccaccctcactcactctcatttacacattttaacttctctc 33054167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 151 - 243
Target Start/End: Original strand, 34059159 - 34059251
Alignment:
Q  151 agtggcagaggcacatagtgctgaggggatgcacttgccaaccctcaaaattaaattttttcacatatacccctatgttttttgcactttgaa 243  Q
    ||||||||  |||||||||  | |||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||    
T  34059159 agtggcaggtgcacatagtcttcaggggatgcacttgccaaccctcaaattttaattttttcacatatacccctatgttttttgcactttgaa 34059251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 151 - 249
Target Start/End: Complemental strand, 48666141 - 48666043
Alignment:
Q  151 agtggcagaggcacatagtgctgaggggatgcacttgccaaccctcaaaattaaattttttcacatatacccctatgttttttgcactttgaacctcct 249  Q
    |||||||||| ||||| | | |||||||||||| ||||||||||||||| | |  |||||||||||||| ||||||  |||||||| ||||||||||||    
T  48666141 agtggcagagccacattgcggtgaggggatgcatttgccaaccctcaaattaattttttttcacatatatccctattgtttttgcattttgaacctcct 48666043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 345 - 401
Target Start/End: Complemental strand, 33053919 - 33053863
Alignment:
Q  345 tccactccggcggcagcaccaccaacaaactccaccacgccaccacccaacctattc 401  Q
    ||||||||| |||||||||||||| ||||| ||||||||||||||||||||| ||||    
T  33053919 tccactccgacggcagcaccaccaccaaaccccaccacgccaccacccaacccattc 33053863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 162 - 250
Target Start/End: Original strand, 18391436 - 18391525
Alignment:
Q  162 cacatagtgctgaggggatgcacttgccaaccctcaaaattaaatttttt-cacatatacccctatgttttttgcactttgaacctcctt 250  Q
    ||||||||  |||||||||||||||||||||||||||| |||| |||||| ||||||||  | |||  |||| ||| |||||||||||||    
T  18391436 cacatagttgtgaggggatgcacttgccaaccctcaaatttaatttttttccacatatattcatattgttttagcaatttgaacctcctt 18391525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 428 - 514
Target Start/End: Original strand, 34059510 - 34059598
Alignment:
Q  428 tctctctccatctcaaaaatcagttgcaata--aaccaccaccatctccaccttatttcctcgtcctccgcggtcgtgcaaccacaaag 514  Q
    |||||||| |||||||||||| |||||||    |||||||||  ||||| ||||||||| |||||||| || |||||||||||||||||    
T  34059510 tctctctctatctcaaaaatctgttgcaacgcgaaccaccactttctccgccttatttcgtcgtcctctgccgtcgtgcaaccacaaag 34059598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 431 - 526
Target Start/End: Original strand, 22580822 - 22580919
Alignment:
Q  431 ctctccatctcaaaaatcagttgcaata--aaccaccaccatctccaccttatttcctcgtcctccgcggtcgtgcaaccacaaaggggtattcaaaa 526  Q
    ||||| |||||||||||| |||||||    |||| ||||  ||||| ||||||||| |||||||| || |||||||||||||||||||  ||||||||    
T  22580822 ctctctatctcaaaaatctgttgcaacgcgaaccgccactttctccgccttatttcgtcgtcctctgccgtcgtgcaaccacaaagggacattcaaaa 22580919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 162 - 198
Target Start/End: Complemental strand, 12372288 - 12372252
Alignment:
Q  162 cacatagtgctgaggggatgcacttgccaaccctcaa 198  Q
    ||||| ||| |||||||||||||||||||||||||||    
T  12372288 cacattgtggtgaggggatgcacttgccaaccctcaa 12372252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 108; Significance: 5e-54; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 108; E-Value: 5e-54
Query Start/End: Original strand, 151 - 401
Target Start/End: Complemental strand, 41502035 - 41501764
Alignment:
Q  151 agtggcagaggcacatagtgctgaggggatgcacttgccaaccctcaaaattaaattttttcacatatacccctatgttttttgcactttgaacctcctt 250  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||     
T  41502035 agtggcggaggcacatagtgctgaggggatgcacttgccaaccctcaaaattaaattttttcacatatatccctatgtttttagcactttgaacctcctc 41501936  T
Q  251 atatannnnnnnnngcaccagctgacccaaaccgccctcacttcactcatttacacattttaacttc--------------tctcttaacttagaaaact 336  Q
    ||||          ||||||||||||||||||| || |||| |||||||||||||||||||||||||              ||||||||||||||||||     
T  41501935 atat-tttttctttgcaccagctgacccaaaccaccatcac-tcactcatttacacattttaacttctctctaaactatcttctcttaacttagaaaacc 41501838  T
Q  337 cttcttcctccact---------ccggcggcagcaccaccaacaaactccaccacgccaccacccaacctattc 401  Q
    ||||||||||||||         |||||||||| ||||||| ||||||||||| ||||||||||||||| ||||    
T  41501837 cttcttcctccacttccaccacaccggcggcagaaccaccaccaaactccaccgcgccaccacccaacccattc 41501764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 403 - 526
Target Start/End: Complemental strand, 41501738 - 41501615
Alignment:
Q  403 ctaccatctacaatcacgttgtagttctctctccatctcaaaaatcagttgcaataaaccaccaccatctccaccttatttcctcgtcctccgcggtcgt 502  Q
    |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||   |||||||||| |||||    
T  41501738 ctaccatctacaatcacgttttagttctctctccatctcaaaaatcagttgcaataaatcaccaccgtctccaccttattttgccgtcctccgccgtcgt 41501639  T
Q  503 gcaaccacaaaggggtattcaaaa 526  Q
    |||||| |||||||  ||||||||    
T  41501638 gcaaccgcaaagggacattcaaaa 41501615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 174 - 246
Target Start/End: Original strand, 19140259 - 19140331
Alignment:
Q  174 aggggatgcacttgccaaccctcaaaattaaattttttcacatatacccctatgttttttgcactttgaacct 246  Q
    |||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||| |||||||||    
T  19140259 aggggatgcacttgccaaccctcaaattttaattttttcacatatacccctatgttttttgcaatttgaacct 19140331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 99; Significance: 1e-48; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 151 - 328
Target Start/End: Original strand, 29635499 - 29635674
Alignment:
Q  151 agtggcagaggcacatagtgctgaggggatgcacttgccaaccctcaaaattaaattttttcacatatacccctatgttttttgcactttgaacctcctt 250  Q
    |||||| |||| |||||||| |||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||     
T  29635499 agtggcggaggtacatagtgatgaggggatgcacttgccaaccttcaaaattaaattttttcatatatacccctatgttttttgcactttgaacctcctc 29635598  T
Q  251 atatannnnnnnnngcaccagctgacccaaaccgccctcacttcactcatttacacattttaacttctctcttaactt 328  Q
    ||||          ||||||||||||||||||| || |||| |||||||||||||||||||||||||||||| |||||    
T  29635599 atat-tttttttttgcaccagctgacccaaaccaccatcac-tcactcatttacacattttaacttctctctaaactt 29635674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 410 - 526
Target Start/End: Original strand, 29635832 - 29635948
Alignment:
Q  410 ctacaatcacgttgtagttctctctccatctcaaaaatcagttgcaataaaccaccaccatctccaccttatttcctcgtcctccgcggtcgtgcaacca 509  Q
    ||||||||||||| ||||||||||||||||||||||||||||||| ||||| ||||||| |||||||||||||||  |||||||||| |||||||||||     
T  29635832 ctacaatcacgttttagttctctctccatctcaaaaatcagttgcgataaatcaccaccgtctccaccttatttcgccgtcctccgccgtcgtgcaaccg 29635931  T
Q  510 caaaggggtattcaaaa 526  Q
    |||||||  ||||||||    
T  29635932 caaagggacattcaaaa 29635948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 345 - 401
Target Start/End: Original strand, 29635736 - 29635792
Alignment:
Q  345 tccactccggcggcagcaccaccaacaaactccaccacgccaccacccaacctattc 401  Q
    |||||||||||||||||||||||| ||||||||||| ||||||||||||||| ||||    
T  29635736 tccactccggcggcagcaccaccaccaaactccaccccgccaccacccaacccattc 29635792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 81; Significance: 7e-38; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 81; E-Value: 7e-38
Query Start/End: Original strand, 152 - 328
Target Start/End: Complemental strand, 39052770 - 39052588
Alignment:
Q  152 gtggcagaggcacatagtgctgaggggatgcacttgccaaccctcaaaattaaattttttcacatatacccctatgttttttgcactttgaacctcctta 251  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||  || |  |||||||||| ||||||| |||||||||||||||||||||||| |    
T  39052770 gtggcggaggcacatagtgctgaggggatgcacttgccaaccctcaatttttatctttttcacatgtacccctgtgttttttgcactttgaacctcctca 39052671  T
Q  252 tatannnnnnnnngcaccagct------gacccaaaccgccctcacttcactcatttacacattttaacttctctcttaactt 328  Q
    ||||         |||||||||      |||||||||| | |||||||||||||||||||||||| ||||||||||| |||||    
T  39052670 tatatatttttttgcaccagctgccaaagacccaaaccactctcacttcactcatttacacatttcaacttctctctaaactt 39052588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 411 - 516
Target Start/End: Complemental strand, 39052437 - 39052331
Alignment:
Q  411 tacaatcacgttgt-agttctctctccatctcaaaaatcagttgcaataaaccaccaccatctccaccttatttcctcgtcctccgcggtcgtgcaacca 509  Q
    |||||||||||| | || ||||||||||||| ||||||| ||||||  ||| ||||||  |||||| | ||||||  ||| |||||| ||||||||||||    
T  39052437 tacaatcacgttttgagctctctctccatctaaaaaatctgttgcagcaaatcaccacggtctccatcctatttcgccgttctccgccgtcgtgcaacca 39052338  T
Q  510 caaaggg 516  Q
    |||||||    
T  39052337 caaaggg 39052331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0049 (Bit Score: 80; Significance: 3e-37; HSPs: 4)
Name: scaffold0049
Description:

Target: scaffold0049; HSP #1
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 403 - 526
Target Start/End: Original strand, 45493 - 45616
Alignment:
Q  403 ctaccatctacaatcacgttgtagttctctctccatctcaaaaatcagttgcaataaaccaccaccatctccaccttatttcctcgtcctccgcggtcgt 502  Q
    |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||  |||||||||| |||||    
T  45493 ctaccatctacaatcacgttttagttctctctccatctcaaaaatcagttgcaataaatcaccaccgtctccaccttatttcaccgtcctccgccgtcgt 45592  T
Q  503 gcaaccacaaaggggtattcaaaa 526  Q
     ||||  |||||||  ||||||||    
T  45593 acaactgcaaagggacattcaaaa 45616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0049; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 206 - 327
Target Start/End: Original strand, 45241 - 45360
Alignment:
Q  206 ttttttcacatatacccctatgttttttgcactttgaacctccttatatannnnnnnnngcaccagctgacccaaaccgccctcacttcactcatttaca 305  Q
    |||||||||||||||||||||||||||||||||||||||||||| || |          ||||||||||||||||||| ||||||| |||||||||||||    
T  45241 ttttttcacatatacccctatgttttttgcactttgaacctcctcat-tttttttttttgcaccagctgacccaaaccaccctcac-tcactcatttaca 45338  T
Q  306 cattttaacttctctcttaact 327  Q
    |||||||| | |||||| ||||    
T  45339 cattttaaatgctctctaaact 45360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0049; HSP #3
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 345 - 401
Target Start/End: Original strand, 45411 - 45467
Alignment:
Q  345 tccactccggcggcagcaccaccaacaaactccaccacgccaccacccaacctattc 401  Q
    |||||||||||||||||||||||  ||||||||||| ||||||||||||||| ||||    
T  45411 tccactccggcggcagcaccaccgccaaactccaccgcgccaccacccaacccattc 45467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0049; HSP #4
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 318 - 350
Target Start/End: Original strand, 45365 - 45397
Alignment:
Q  318 tctcttaacttagaaaactcttcttcctccact 350  Q
    |||||||||||||||||| ||||||||||||||    
T  45365 tctcttaacttagaaaacccttcttcctccact 45397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0010 (Bit Score: 70; Significance: 3e-31; HSPs: 1)
Name: scaffold0010
Description:

Target: scaffold0010; HSP #1
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 151 - 320
Target Start/End: Complemental strand, 251496 - 251321
Alignment:
Q  151 agtggcagaggcacatagtgctgaggggatgcacttgccaaccctcaaaattaaattttttcacatatacccctatgttttttgcactttgaacctcctt 250  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||||   |||||||||||||| ||||||||||||||||  ||||||||| |     
T  251496 agtggcagaggcacatagtgccgaggggatgcacttgccaaccctcaaaatttctttttttcacatatatccctatgttttttgcatgttgaacctcttc 251397  T
Q  251 atatannnnnnnnngcaccagct------gacccaaaccgccctcacttcactcatttacacattttaacttctct 320  Q
    || |          |||||||||      |||||||||| | |||||||||||||||||||||||| |||||||||    
T  251396 atttttttttttttgcaccagctgccaaagacccaaaccactctcacttcactcatttacacatttcaacttctct 251321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 61; Significance: 6e-26; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 151 - 247
Target Start/End: Complemental strand, 3695286 - 3695190
Alignment:
Q  151 agtggcagaggcacatagtgctgaggggatgcacttgccaaccctcaaaattaaattttttcacatatacccctatgttttttgcactttgaacctc 247  Q
    |||||||||||||||||||||||||  ||||||||||||||| |||||  || |  ||||||||| |||||||||||||||||||||||||||||||    
T  3695286 agtggcagaggcacatagtgctgagaagatgcacttgccaactctcaatttttatctttttcacaaatacccctatgttttttgcactttgaacctc 3695190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 428 - 523
Target Start/End: Complemental strand, 3694946 - 3694851
Alignment:
Q  428 tctctctccatctcaaaaatcagttgcaataaaccaccaccatctccaccttatttcctcgtcctccgcggtcgtgcaaccacaaaggggtattca 523  Q
    ||||||||||||| ||||||| ||||||  ||| ||||||  |||||||| ||||||  ||| |||||| |||||||||||||||||||| |||||    
T  3694946 tctctctccatctaaaaaatctgttgcagcaaatcaccacggtctccaccctatttcgccgttctccgccgtcgtgcaaccacaaaggggcattca 3694851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 274 - 319
Target Start/End: Complemental strand, 3695159 - 3695114
Alignment:
Q  274 gacccaaaccgccctcacttcactcatttacacattttaacttctc 319  Q
    |||||||||| | |||||||||||||| ||||||||| ||||||||    
T  3695159 gacccaaaccactctcacttcactcatctacacatttcaacttctc 3695114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 49; Significance: 9e-19; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 174 - 246
Target Start/End: Complemental strand, 678875 - 678803
Alignment:
Q  174 aggggatgcacttgccaaccctcaaaattaaattttttcacatatacccctatgttttttgcactttgaacct 246  Q
    ||||||| || ||||||||||||||| || |||||||||||||||| || |||||||||||||||||||||||    
T  678875 aggggatacatttgccaaccctcaaattttaattttttcacatatatccttatgttttttgcactttgaacct 678803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 425 - 526
Target Start/End: Complemental strand, 678565 - 678460
Alignment:
Q  425 agttctctctccatctcaaaaatcagttgcaata----aaccaccaccatctccaccttatttcctcgtcctccgcggtcgtgcaaccacaaaggggtat 520  Q
    ||||||||||| |||||||||||  |||||||      |||||||||  ||||| ||||||||| |||||||| |  |||||||||||||||||||  ||    
T  678565 agttctctctctatctcaaaaatttgttgcaacgcgcgaaccaccactttctccgccttatttcgtcgtcctctgtcgtcgtgcaaccacaaagggacat 678466  T
Q  521 tcaaaa 526  Q
    ||||||    
T  678465 tcaaaa 678460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University