View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11721_low_26 (Length: 519)
Name: NF11721_low_26
Description: NF11721
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11721_low_26 |
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Alignment Details
Target: chr7 (Bit Score: 404; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 404; E-Value: 0
Query Start/End: Original strand, 19 - 506
Target Start/End: Complemental strand, 42342877 - 42342390
Alignment:
| Q |
19 |
agttatatcatttgaaaagagtcatccatatttgatgattcaatccttgcaaacagtggaaaaatttgctctcgaacaaaatccacaccaccattccnnn |
118 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
42342877 |
agttatatcatttgaaaagagtcatccatatttgatgattcaatccttgcaaacagtggaaaaatttgctctccaacaaaatccacaccaccattccttt |
42342778 |
T |
|
| Q |
119 |
nnnnnnnnnnnnnnnnnnnnngactggttttgactttagtatattcttcttggttcttgatctgcatcatgtgcacttttctcagttttaactacacaag |
218 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42342777 |
gtttttttttcctttctttttgactggttttgactttagtatattcttcttggttcttgatctgcatcatgtgcacttttctcagttttaactacacaag |
42342678 |
T |
|
| Q |
219 |
aagatgcacttatgcatcaaggatttcactctttaccatgtgatgttttcttcacagatgacaacttgtattccttcttaagcctctcagtttctctttt |
318 |
Q |
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|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42342677 |
aagatgcacttatgcatcaaggatttcactctctaccatgtgatgttttcttcacagatgacaacttgtattccttcttaagcctctcagtttctctttt |
42342578 |
T |
|
| Q |
319 |
gctttctgagctttcgtttgaactctcacgtttgtttcctctaaacactgcatgagataatcataagacagtaatttagatttgatttcaatccatttga |
418 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42342577 |
gctttctgagctttcgtttgaactctcacgtttgtttcctctgaacactgcatgagataatcataagacagtaatttagatttgatttcaatccatttga |
42342478 |
T |
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| Q |
419 |
ttcaaaataaaaggagttttaatgtctctaaattttctatggctaattatagtttagaccatcattggttacctgttgtcttcttctc |
506 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42342477 |
ttcaaaataaaaggagttttaatgtctctaaattttctatggctaattatagtttagaccatcattggttacctgttgtcttcttctc |
42342390 |
T |
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