View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11721_low_28 (Length: 510)

Name: NF11721_low_28
Description: NF11721
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11721_low_28
NF11721_low_28
[»] chr6 (4 HSPs)
chr6 (24-352)||(32219498-32219826)
chr6 (347-507)||(32219373-32219534)
chr6 (119-194)||(10519863-10519936)
chr6 (120-183)||(9069774-9069837)
[»] chr7 (2 HSPs)
chr7 (275-460)||(20067720-20067905)
chr7 (348-409)||(8129342-8129403)
[»] chr4 (1 HSPs)
chr4 (119-247)||(44229534-44229662)
[»] chr1 (1 HSPs)
chr1 (119-257)||(51276211-51276348)
[»] chr8 (1 HSPs)
chr8 (120-184)||(24953449-24953512)
[»] chr2 (1 HSPs)
chr2 (317-354)||(28548326-28548363)


Alignment Details
Target: chr6 (Bit Score: 269; Significance: 1e-150; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 269; E-Value: 1e-150
Query Start/End: Original strand, 24 - 352
Target Start/End: Complemental strand, 32219826 - 32219498
Alignment:
Q  24 catcgacctgcgtgagaagtagacgacggctggagagagagacggtgaaggtcgtggtcggcggaggtggaggagttcatgatagatggtgacatagacg 123  Q
    ||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |    
T  32219826 catcgacctgcgtgagaagtagacgacagcgggagagagagacggtgaaggtcgtggtcggcggaggtggaggaattcatgatagatggtgacatagatg 32219727  T
Q  124 gtggtgagaaaggagtgttcagatctgaagggattggaggtcgatgacgacgatggtgaggacggcgtaatggttttctaacgagggtgatggtagtgac 223  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  32219726 gtggtgagaaaggagtgttcagatctgaagggattggaggtcgatgacgacgatggtgaggacgacgtaatggttttctaacgagggtgatggtagtgac 32219627  T
Q  224 aagaatggaaggcgcggtggcaaggacagactgaaggtggtggtcgccggcgccgtgagtttcggatctaaacaacaaagggacaacgacgacggtggtg 323  Q
     |||||||| ||| |||||||||||||| |||||||||||||| |||||||||||||| |||| |||||||||| |||||||||||||||||||||||||    
T  32219626 gagaatggagggcacggtggcaaggacaaactgaaggtggtggccgccggcgccgtgaatttcagatctaaacagcaaagggacaacgacgacggtggtg 32219527  T
Q  324 gtcattaatgagggcggagggtgcggtgg 352  Q
     ||||||| ||||||||||||||||||||    
T  32219526 ctcattaacgagggcggagggtgcggtgg 32219498  T

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Target: chr6; HSP #2
Raw Score: 118; E-Value: 6e-60
Query Start/End: Original strand, 347 - 507
Target Start/End: Complemental strand, 32219534 - 32219373
Alignment:
Q  347 cggtggtggtcactaatgaaggcggagggtgcggtggcgattatggcggtggtggaagagggctacggcggtgaagacacaaagcatggtggaagaatag 446  Q
    |||||||| ||| ||| || ||||||||||||||||||||||||||||||||||| ||||||||||| |||||| |||||||||||||||||||||||||    
T  32219534 cggtggtgctcattaacgagggcggagggtgcggtggcgattatggcggtggtgggagagggctacgacggtgaggacacaaagcatggtggaagaatag 32219435  T
Q  447 agaaag-aaacaacacacagagaagagaggaaggagatatggtgttgtgtttttacaaaatt 507  Q
    |||||| ||| |||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  32219434 agaaagaaaaaaacacacagagaagagaggaaggagatagggtgttgtgtttttacaaaatt 32219373  T

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Target: chr6; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 119 - 194
Target Start/End: Complemental strand, 10519936 - 10519863
Alignment:
Q  119 agacggtggtgagaaaggagtgttcagatctgaagggattggaggtcgatgacgacgatggtgaggacggcgtaat 194  Q
    ||||||||||||||||||  ||||| ||| ||||||| ||||||||||||| ||||| ||||||||||||||||||    
T  10519936 agacggtggtgagaaagg--tgttccgatttgaaggggttggaggtcgatggcgacgttggtgaggacggcgtaat 10519863  T

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Target: chr6; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 120 - 183
Target Start/End: Original strand, 9069774 - 9069837
Alignment:
Q  120 gacggtggtgagaaaggagtgttcagatctgaagggattggaggtcgatgacgacgatggtgag 183  Q
    |||||||||||||| || ||||||||||||||||||||| ||||| || ||||||| |||||||    
T  9069774 gacggtggtgagaatggtgtgttcagatctgaagggattagaggttgacgacgacgttggtgag 9069837  T

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Target: chr7 (Bit Score: 89; Significance: 1e-42; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 275 - 460
Target Start/End: Complemental strand, 20067905 - 20067720
Alignment:
Q  275 gccgtgagtttcggatctaaaca-ac-aaagggacaacgacgacggtggtggtcattaatgagggcggagggtgcggtggtggtcactaatgaaggcgga 372  Q
    |||||||||||||||||| |||| || |||||||||| ||||| ||||||||||||||| ||||||||| ||||| ||||||||||||||||||||||||    
T  20067905 gccgtgagtttcggatcttaacagactaaagggacaatgacgatggtggtggtcattaacgagggcggatggtgcagtggtggtcactaatgaaggcgga 20067806  T
Q  373 gggtgcggtggcgattatggcggtggtggaagagggctacggcggtgaagacacaaagcatggtggaagaatagagaaagaaacaaca 460  Q
    || || |||||||||||||| |||||||| || |||   ||| ||||| |  ||||||||||||||||||||||||| ||||| ||||    
T  20067805 ggatgtggtggcgattatggtggtggtgggagtgggaggcggtggtgagg--acaaagcatggtggaagaatagagagagaaaaaaca 20067720  T

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Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 348 - 409
Target Start/End: Original strand, 8129342 - 8129403
Alignment:
Q  348 ggtggtggtcactaatgaaggcggagggtgcggtggcgattatggcggtggtggaagagggc 409  Q
    ||||||| |||||||||| | ||||||||||||||| ||| | ||||||||||  |||||||    
T  8129342 ggtggtgatcactaatgaggacggagggtgcggtggtgatgacggcggtggtgagagagggc 8129403  T

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Target: chr4 (Bit Score: 65; Significance: 2e-28; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 119 - 247
Target Start/End: Original strand, 44229534 - 44229662
Alignment:
Q  119 agacggtggtgagaaaggagtgttcagatctgaagggattggaggtcgatgacgacgatggtgaggacggcgtaatggttttctaacgagggtgatggta 218  Q
    |||||||||||||||||  |||||||||||||||||| |||||||||||||||||| ||||||||||||   ||||||| |  |  ||||| ||||||||    
T  44229534 agacggtggtgagaaagttgtgttcagatctgaaggggttggaggtcgatgacgacaatggtgaggacgatataatggtgtggtggcgaggatgatggta 44229633  T
Q  219 gtgacaagaatggaaggcgcggtggcaag 247  Q
    |||||||| | ||||||||||| ||||||    
T  44229634 gtgacaaggacggaaggcgcggcggcaag 44229662  T

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Target: chr1 (Bit Score: 63; Significance: 4e-27; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 119 - 257
Target Start/End: Original strand, 51276211 - 51276348
Alignment:
Q  119 agacggtggtgagaaaggagtgttcagatctgaagggattggaggtcgatgacgacgatggtgaggacggcgtaatggttttctaacgagggtgatggta 218  Q
    |||||||||||||||||  ||||||||||| |||||| ||| ||||||||||||||||||||||||||||  ||||||| |  |  ||||| ||||||||    
T  51276211 agacggtggtgagaaagttgtgttcagatccgaaggggttgaaggtcgatgacgacgatggtgaggacggtataatggtgtggtggcgaggatgatggta 51276310  T
Q  219 gtgacaagaatggaaggcgcggtggcaaggacagactga 257  Q
    |||||||| | ||| ||||||| ||||| ||||||||||    
T  51276311 gtgacaaggacggagggcgcggcggcaa-gacagactga 51276348  T

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Target: chr8 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 120 - 184
Target Start/End: Original strand, 24953449 - 24953512
Alignment:
Q  120 gacggtggtgagaaaggagtgttcagatctgaagggattggaggtcgatgacgacgatggtgagg 184  Q
    |||||||||||| | || ||||||||||||||| |||||||||||||| ||||| | ||||||||    
T  24953449 gacggtggtgaggacggcgtgttcagatctgaa-ggattggaggtcgaagacgatggtggtgagg 24953512  T

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Target: chr2 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 317 - 354
Target Start/End: Original strand, 28548326 - 28548363
Alignment:
Q  317 ggtggtggtcattaatgagggcggagggtgcggtggtg 354  Q
    ||||||||||| |||||||| |||||||||||||||||    
T  28548326 ggtggtggtcactaatgaggacggagggtgcggtggtg 28548363  T

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