View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11721_low_29 (Length: 508)
Name: NF11721_low_29
Description: NF11721
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11721_low_29 |
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| [»] scaffold0245 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 447; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 447; E-Value: 0
Query Start/End: Original strand, 1 - 491
Target Start/End: Original strand, 1313371 - 1313861
Alignment:
| Q |
1 |
cagaccttgaagccaagtctcttacatgaccatagcttggcaagacttcgtacatatcaccaaggtatctctgaataacctttgccttcgtaacagactc |
100 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1313371 |
cagaccttgaagccaagtctcttacatgaccatagcttggcaagacttcatacatatcaccaaggtatctctgaataacctttgccttcgtaacagactc |
1313470 |
T |
|
| Q |
101 |
cacaaccaccacagactttcccacgggtggatacaatggttttcccgtaaatttccctagcggcttctccagatcaacctggcaagagtttacctccttc |
200 |
Q |
| |
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|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
1313471 |
cacaaccatcacagactttcccacgggtggatacaatggttttcccgtaaatttccctagctgcttctccagatcaacctggcaagagtttacctccttc |
1313570 |
T |
|
| Q |
201 |
tttttcaaccttgtagaagcagaactatcctgtgtttcttttgaagtgctaacagacaaactctcctgaacaaatcatgttagcatcaatgcttaaaaca |
300 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
1313571 |
tttttcaaccttgtagaagcagaactatcctgtgtttcttttgaagtgctaacggacgaactctcctgaacaaatcatgttagcatcaatgcttaaaaca |
1313670 |
T |
|
| Q |
301 |
acaccaagcactatagcaatgtttcaaagtgtgaaccagattacaatagctccttttccctaggaactagaaggtttatgcccaaaaaattgcaagcact |
400 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||| |
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| T |
1313671 |
acaccaagcactatagcaatgtttcaaagtgcgaaccagattacaatagctccttttccctgggaactagaaggtctatgcccaaaaaattgcaagcact |
1313770 |
T |
|
| Q |
401 |
ataccaaggctgtgtttagattgacaaacgggatgaaatggaatcgtaaaaactataaaatagttgaattctttaaaataggatatgatgg |
491 |
Q |
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||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
1313771 |
ataccaaggctgtgtttagattgacaaacaggatgaaatggaatcgtaaaaactataccatagttgaattctttaaaataggatatgatgg |
1313861 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 338; E-Value: 0
Query Start/End: Original strand, 1 - 398
Target Start/End: Original strand, 1294360 - 1294757
Alignment:
| Q |
1 |
cagaccttgaagccaagtctcttacatgaccatagcttggcaagacttcgtacatatcaccaaggtatctctgaataacctttgccttcgtaacagactc |
100 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
1294360 |
cagacctcgaagccaagtctcttacatgaccatagcttggcaagacttcatacatatcaccaaggtatctctgaataaccttcgccttcgtaacagactc |
1294459 |
T |
|
| Q |
101 |
cacaaccaccacagactttcccacgggtggatacaatggttttcccgtaaatttccctagcggcttctccagatcaacctggcaagagtttacctccttc |
200 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
1294460 |
cacaaccatcacagactttcccacgggtggatacaatggttttcccgtaaaattccctagtggcttctccagatcaacctggcaagagtttacctccttc |
1294559 |
T |
|
| Q |
201 |
tttttcaaccttgtagaagcagaactatcctgtgtttcttttgaagtgctaacagacaaactctcctgaacaaatcatgttagcatcaatgcttaaaaca |
300 |
Q |
| |
|
|||||| |||| |||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||| ||||||| ||||||||||||||||| |
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|
| T |
1294560 |
tttttcgacctagtagaagcagaactatcctgtgtttcttttgaagtgctaatggacgaactctcctgaacaaaccatgttaacatcaatgcttaaaaca |
1294659 |
T |
|
| Q |
301 |
acaccaagcactatagcaatgtttcaaagtgtgaaccagattacaatagctccttttccctaggaactagaaggtttatgcccaaaaaattgcaagca |
398 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1294660 |
acaccaagcactatagcaatgtttcaaagtgcgaaccacattacaatagctccttttccctaggaactagaaggtttatgcccaaaaaattgcaagca |
1294757 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0245 (Bit Score: 346; Significance: 0; HSPs: 1)
Name: scaffold0245
Description:
Target: scaffold0245; HSP #1
Raw Score: 346; E-Value: 0
Query Start/End: Original strand, 1 - 398
Target Start/End: Original strand, 22270 - 22667
Alignment:
| Q |
1 |
cagaccttgaagccaagtctcttacatgaccatagcttggcaagacttcgtacatatcaccaaggtatctctgaataacctttgccttcgtaacagactc |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
22270 |
cagaccttgaagccaagtctcttacatgaccatagcttggcaagacttcatacatatcaccaaggtatctctgaataacctttgccttcgtaacagactc |
22369 |
T |
|
| Q |
101 |
cacaaccaccacagactttcccacgggtggatacaatggttttcccgtaaatttccctagcggcttctccagatcaacctggcaagagtttacctccttc |
200 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
22370 |
cacaaccatcacagactttcccacgggtggatacaatggttttcccgtaaaattccctagtggcttctccagatcaacctggcaagagtttacctccttc |
22469 |
T |
|
| Q |
201 |
tttttcaaccttgtagaagcagaactatcctgtgtttcttttgaagtgctaacagacaaactctcctgaacaaatcatgttagcatcaatgcttaaaaca |
300 |
Q |
| |
|
|||||| |||| |||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||| ||||||| ||||||||||||||||| |
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|
| T |
22470 |
tttttcgacctagtagaagcagaactatcctgtgtttcttttgaagtgctaatggacgaactctcctgaacaaaccatgttaacatcaatgcttaaaaca |
22569 |
T |
|
| Q |
301 |
acaccaagcactatagcaatgtttcaaagtgtgaaccagattacaatagctccttttccctaggaactagaaggtttatgcccaaaaaattgcaagca |
398 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
22570 |
acaccaagcactatagcaatgtttcaaagtgcgaaccacattacaatagctccttttccctaggaactagaaggtttatgcccaaaaaattgcaagca |
22667 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 95 - 152
Target Start/End: Original strand, 27946936 - 27946993
Alignment:
| Q |
95 |
agactccacaaccaccacagactttcccacgggtggatacaatggttttcccgtaaat |
152 |
Q |
| |
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||||||||||||||||||||| |||||||| |||||||| | || ||||||||||||| |
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|
| T |
27946936 |
agactccacaaccaccacagattttcccaccggtggataaagtgattttcccgtaaat |
27946993 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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