View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11721_low_31 (Length: 488)
Name: NF11721_low_31
Description: NF11721
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11721_low_31 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 484; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 484; E-Value: 0
Query Start/End: Original strand, 1 - 488
Target Start/End: Original strand, 47317421 - 47317908
Alignment:
| Q |
1 |
ggagaggactgtttcattctcaaaatatgttctgatccatccacattaaaagccagaagtgaaggctcatcagagatcataagacatgttttgcttggac |
100 |
Q |
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| T |
47317421 |
ggagaggactgtttcattctcaaaatatgttctgatccatccacattaaaagccagaagtgaaggctcatcagagatcataagacatgttttgcttggac |
47317520 |
T |
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| Q |
101 |
actttagtcagaaaacaggacttcttattcacttggaagattcccatttgactcgtattcagaacaacggaggcgatgctgtttattgggagaccacaat |
200 |
Q |
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| T |
47317521 |
actttagtcagaaaacaggacttcttattcacttggaagattcccatttgactcgtattcagaacaacggaggcgatgctgtttattgggagaccacaat |
47317620 |
T |
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| Q |
201 |
caattcatttcttgacgattacagacccgttgaagggattatgattgctcattcgggtcgttctcaagtgacacttttcaagtttggagaaacagcaatg |
300 |
Q |
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| T |
47317621 |
caattcattccttgacgattacagacccgttgaagggattatgattgctcattcgggtcgttctcaagtgacacttttcaagtttggagaaacagcaatg |
47317720 |
T |
|
| Q |
301 |
agccacactaaaactagaatggaagaagcatgggtaattgaggaagtggctttcaatgtccctggcctttctgtggactgtttcattcctccagctgagc |
400 |
Q |
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| T |
47317721 |
agccacactaaaactagaatggaagaagcatgggtaattgaggaagtggctttcaatgtccctggcctttctgtggactgtttcattcctccagctgagc |
47317820 |
T |
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| Q |
401 |
taaggtttgcttctgtaagtgaaacctgtgagttttctccaagtcagaagatgaagagtgatgtgtagcaaaggggaaatttctgcat |
488 |
Q |
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| T |
47317821 |
taaggtttgcttctgtaagtgaaacctgtgagttttctccaagtcagaagatgaagagtgatgtgtagcaaaggggaaatttctgcat |
47317908 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 209; Significance: 1e-114; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 3 - 423
Target Start/End: Complemental strand, 5406657 - 5406237
Alignment:
| Q |
3 |
agaggactgtttcattctcaaaatatgttctgatccatccacattaaaagccagaagtgaaggctcatcagagatcataagacatgttttgcttggacac |
102 |
Q |
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| T |
5406657 |
agaggattgtttcatcctcaagctttgtgcagatccatcgacattaaaagccaggagcgaaggtccagcagagatcataaggcacgttttgttcggatac |
5406558 |
T |
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| Q |
103 |
tttagtcagaaaacaggacttcttattcacttggaagattcccatttgactcgtattcagaacaacggaggcgatgctgtttattgggagaccacaatca |
202 |
Q |
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| T |
5406557 |
tttagtcagaaaacaggacttcttgttcacttggaagattcccatttgacccgtattcagaacaatggaggcgatgcagtttattgggagaccacgataa |
5406458 |
T |
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| Q |
203 |
attcatttcttgacgattacagacccgttgaagggattatgattgctcattcgggtcgttctcaagtgacacttttcaagtttggagaaacagcaatgag |
302 |
Q |
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| T |
5406457 |
attcatttcttgacgactacagacctgttgaagggattatgattgctcactcaggtcgatctgtagtgacactattcaggtttggagaaacagcattgag |
5406358 |
T |
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| Q |
303 |
ccacactaaaactagaatggaagaagcatgggtaattgaggaagtggctttcaatgtccctggcctttctgtggactgtttcattcctccagctgagcta |
402 |
Q |
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| T |
5406357 |
ccatactaaaactaggatggaagaagcatggacgattgaggaggttgcgtttaatgtccccggcctttccatagactgtttcattcctccatcagagctt |
5406258 |
T |
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| Q |
403 |
aggtttgcttctgtaagtgaa |
423 |
Q |
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| T |
5406257 |
cgatttgcttctataagtgaa |
5406237 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 101 - 329
Target Start/End: Complemental strand, 48371787 - 48371559
Alignment:
| Q |
101 |
actttagtcagaaaacaggacttcttattcacttggaagattcccatttgactcgtattcagaacaacggaggcgatgctgtttattgggagaccacaat |
200 |
Q |
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| T |
48371787 |
actttagtcagaaaactgggcttcttgttcacattgaggattctcatctgacccgcatacaatccaatggaggtgacgcggtttattgggaaacaacgat |
48371688 |
T |
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| Q |
201 |
caattcatttcttgacgattacagacccgttgaagggattatgattgctcattcgggtcgttctcaagtgacacttttcaagtttggagaaacagcaatg |
300 |
Q |
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| T |
48371687 |
caattcattccttgatgattacaggcctgtggaagggatcatgattgcccattcagggcattctgtggtgactcttttcaggtttggggagatggccatg |
48371588 |
T |
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| Q |
301 |
agccacactaaaactagaatggaagaagc |
329 |
Q |
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| T |
48371587 |
agccataccaaaacaaaaatggaagaagc |
48371559 |
T |
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