View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11721_low_33 (Length: 477)
Name: NF11721_low_33
Description: NF11721
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11721_low_33 |
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| [»] chr7 (2 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 468; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 468; E-Value: 0
Query Start/End: Original strand, 1 - 476
Target Start/End: Original strand, 56231516 - 56231991
Alignment:
| Q |
1 |
gaaaacaagctttatcccctcattactgctgctgaggcaagattggctgaagcaccagttgaaaacgcgtaagtatatactggttgtatttacggtctag |
100 |
Q |
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| T |
56231516 |
gaaaacaagctttatcccctcattactgctgctgaggcaagattggctgaagcaccagttgaaaacgcgtaagtatatactggttgtatttacggtctag |
56231615 |
T |
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| Q |
101 |
tttgttgtttaacttatttttggaatggtgaatgtaaatataattagttgttagtaatgtcaatggaggattcaaactgacatcaccttatctctcaaat |
200 |
Q |
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| T |
56231616 |
tttgttgtttaacttatttttggaatggtgaatgtaaatataattagttgttagtaatgtcaatggaggattcaaactgacatcaccttatctctcaaat |
56231715 |
T |
|
| Q |
201 |
tttccattgtgtagtactctatgtatgaatggaacaattgaccccgagaaagcaaggggccgaatattggtttgtcttagaggaatcagtgcaagagtgg |
300 |
Q |
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| T |
56231716 |
tttccattgtgtagtactctatgtatgaatggaacaattgaccccgagaaagcaaggggccgaatattggtttgtcttagaggaatcagtgcaagagtgg |
56231815 |
T |
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| Q |
301 |
aaaaaagttttgttgctttggaggctgaagcagttggaatgattctttgtaatgatcagtctaatggcaatgagcttattgctgatcctcatttcctgcc |
400 |
Q |
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| T |
56231816 |
aaaagagttttgttgctttggaggctgaagcagttggaatgattctttgtaatgatcagtctaatggcaatgagcttattgctgatcctcatttcctacc |
56231915 |
T |
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| Q |
401 |
tgcaacacagattacttatgcagatggcgttgctctctttgcctacatcaattcaaccaagtaacttttgttgctc |
476 |
Q |
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| T |
56231916 |
tgcaacacagattacttatgcagatggcgttgctctctttgcctacatcaattcaaccaagtaacttttgttgctc |
56231991 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 174; Significance: 2e-93; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 174; E-Value: 2e-93
Query Start/End: Original strand, 204 - 477
Target Start/End: Original strand, 39189513 - 39189786
Alignment:
| Q |
204 |
ccattgtgtagtactctatgtatgaatggaacaattgaccccgagaaagcaaggggccgaatattggtttgtcttagaggaatcagtgcaagagtggaaa |
303 |
Q |
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| T |
39189513 |
ccattgtgtagtactctatgtatgaatggaacaattgaccccgagaaagcaagtggccgaatattggtttgtcttcgaggtattaatgggaaagtggaaa |
39189612 |
T |
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| Q |
304 |
aaagttttgttgctttggaggctgaagcagttggaatgattctttgtaatgatcagtctaatggcaatgagcttattgctgatcctcatttcctgcctgc |
403 |
Q |
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| T |
39189613 |
agagtcttgttgctttggaggctaaagcagttggaatgattctttttaacgatcggtctcatggcaatgagcttactgatgatcctcatttcctacctac |
39189712 |
T |
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| Q |
404 |
aacacagattacttatgcagatggcgttgctctctttgcctacatcaattcaaccaagtaacttttgttgctcc |
477 |
Q |
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| T |
39189713 |
agcacatattatttatgaagatggtgttgctgtctttgcctacatcaattcaaccaagtaacttttgttgctcc |
39189786 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 165; E-Value: 5e-88
Query Start/End: Original strand, 1 - 201
Target Start/End: Original strand, 39189253 - 39189453
Alignment:
| Q |
1 |
gaaaacaagctttatcccctcattactgctgctgaggcaagattggctgaagcaccagttgaaaacgcgtaagtatatactggttgtatttacggtctag |
100 |
Q |
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| T |
39189253 |
gaaaacaagctttatccactcattactgctgctgaggcaaaattggctgaagcaccggttgaaaacgcgtaagtatatactgcttgtatttgcggtcttg |
39189352 |
T |
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| Q |
101 |
tttgttgtttaacttatttttggaatggtgaatgtaaatataattagttgttagtaatgtcaatggaggattcaaactgacatcaccttatctctcaaat |
200 |
Q |
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| T |
39189353 |
tttgttgtttaacttatttttggaatggtgaatgtaaatataattggttgttagtaatgtcaatggaggattcaaactgacatcacctcatctctaaaat |
39189452 |
T |
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| Q |
201 |
t |
201 |
Q |
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| T |
39189453 |
t |
39189453 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 34; Significance: 0.0000000007; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 375 - 448
Target Start/End: Complemental strand, 43014434 - 43014361
Alignment:
| Q |
375 |
cttattgctgatcctcatttcctgcctgcaacacagattacttatgcagatggcgttgctctctttgcctacat |
448 |
Q |
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| T |
43014434 |
cttattgctgatcctaatttcttgtcagcatcacagattaattatgaagatggtgttgctgtgtttgcctacat |
43014361 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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