View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11721_low_34 (Length: 467)
Name: NF11721_low_34
Description: NF11721
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11721_low_34 |
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Alignment Details
Target: chr2 (Bit Score: 393; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 393; E-Value: 0
Query Start/End: Original strand, 10 - 451
Target Start/End: Original strand, 4487957 - 4488398
Alignment:
| Q |
10 |
ctagtattgagttgatagggaggaggatgataatcaaataaaaaccaaaattaagcatttcatttcaaagagaagaaaagatagatttgataccttgtta |
109 |
Q |
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| T |
4487957 |
ctagtattgagttgatagggaggaggatgataatcaaatagaaaccaaaattaagcatttcatttcaaagagaagaaaagatagatttgataccttgtta |
4488056 |
T |
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| Q |
110 |
tagacaagctgaaccaaatcattataggttccattgatgggataatacctatatggcagatcataccccaaatggttcagtacatgctcaaaaatttcaa |
209 |
Q |
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| T |
4488057 |
tagacaagctgaaccaaatcattataggttccatcgatgggataataactatatggcagatcgtaccccaaatggttcagtacatgctcaaaaatttcaa |
4488156 |
T |
|
| Q |
210 |
tgcagaatccagtatatttatcaggctctccattctggccatactctaccttgacaaacctggaaaacgaggttctgcttctgactgcaattctcaatgg |
309 |
Q |
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| T |
4488157 |
tgcagaatccagtatatttatcaggctctccattctggccatacacaaccttgacaaacctggaaaacgaggttctgcttctgactgcaattctcaatgg |
4488256 |
T |
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| Q |
310 |
annnnnnnctgtgggcatattccagccctttggaatacgggcccaattcccaggccaccgtacacccctgaaacattttgtatttccagcaaccttattt |
409 |
Q |
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| T |
4488257 |
atttttttctgtgggcatgttccagccctttggaatacgggcccaattcccaggccaccgtacacccctgaaacattttgtatttccagcaaccttattt |
4488356 |
T |
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| Q |
410 |
ccaccttgtcctgcatggtggattgtagtaaatccatgttgt |
451 |
Q |
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| T |
4488357 |
ccaccttgtcctgcatggtggattgtagtaaatccatgttgt |
4488398 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 178; E-Value: 8e-96
Query Start/End: Original strand, 21 - 447
Target Start/End: Original strand, 4483001 - 4483426
Alignment:
| Q |
21 |
ttgatagggaggaggatgataatcaaataaaaaccaaaattaagcatttcatttcaaagagaagaaaagatagatttgataccttgttatagacaagctg |
120 |
Q |
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| T |
4483001 |
ttgataggggggataatgataataaaatagaaaccaaaataaaacatttcatttcaaaga-----aaagatagatttgataccttgttatagacaagctg |
4483095 |
T |
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| Q |
121 |
aaccaaatcattataggttccattgatgggataatacctatat------ggcagatcataccccaaatggttcagtacatgctcaaaaatttcaatgcag |
214 |
Q |
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| T |
4483096 |
aaccatatcattataggttccattgatgggataatacctatatggccgaggcagaccgtaccccaaatggtttagcacatgctcaaaaatatcaatgcag |
4483195 |
T |
|
| Q |
215 |
aatccagtatatttatcaggctctccattctggccatactctaccttgacaaacctggaaaacgaggttctgcttctgactgcaattctcaatgg--ann |
312 |
Q |
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| T |
4483196 |
aatccactatatttatcaggctttccattctggccatactcaaccttgacatacttggaaaaatagg---tacttttgactgcaattttcaatggttttt |
4483292 |
T |
|
| Q |
313 |
nnnnnctgtgggcatattccagccctttggaatacgggcccaattcccaggccaccgtacacccctgaaacattttgtatttccagcaaccttatttcca |
412 |
Q |
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|||| ||||| || |||||||||||| |||| | ||||||||||||| | |||||||||||||||| ||| ||||||| ||||||||||||| |
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| T |
4483293 |
tttttctgtaggcatgtt-cagccctttggaccacggtctaaattcccaggccagtggacacccctgaaacattctgtttttccagtaaccttatttcca |
4483391 |
T |
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| Q |
413 |
ccttgtcctgcatggtggattgtagtaaatccatg |
447 |
Q |
| |
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| T |
4483392 |
ccttgtcctgcatggttgattgtagtgaagccatg |
4483426 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 46; Significance: 5e-17; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 100 - 228
Target Start/End: Complemental strand, 34606071 - 34605943
Alignment:
| Q |
100 |
taccttgttatagacaagctgaaccaaatcattataggttccattgatgggataatacctatatggcagatcata-ccccaaatggttcagtacatgctc |
198 |
Q |
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|||||||||||| ||||| ||||||| ||||||||||||| | |||||||||||||| |||||| |||||||| ||| |||| ||| | || | ||| |
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| T |
34606071 |
taccttgttataaacaagttgaaccagatcattataggttgcgttgatgggataatagtcatatggaagatcatagcccaaaattgtt-aaaaccttctc |
34605973 |
T |
|
| Q |
199 |
aaaaatttcaatgcagaatccagtatattt |
228 |
Q |
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| T |
34605972 |
aaaaatttcaatgcaaaatccactatattt |
34605943 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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