View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11721_low_35 (Length: 461)
Name: NF11721_low_35
Description: NF11721
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11721_low_35 |
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Alignment Details
Target: chr2 (Bit Score: 356; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 356; E-Value: 0
Query Start/End: Original strand, 14 - 443
Target Start/End: Original strand, 26496505 - 26496931
Alignment:
| Q |
14 |
ggacatcaccctgatacgttgatatctgcaatgatttgaaaaatatatgtaattgaatgcaaacgcatgtgttggttttatcttgacatcggacaccaga |
113 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
26496505 |
ggacatgaccctgatacgttgatatctgcaatgatttgaaaaatatatgtaattgaatgcaatcgcatgtgttggttttatcttgacatcggacaccaga |
26496604 |
T |
|
| Q |
114 |
tatgccttcaatcttaagtgtatgtgctacatatttaggagttttctaagatgaattaattaaacatcattgttaacctcttaattttgtgttaaattga |
213 |
Q |
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||||||||| ||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||| | | ||| |||||||||||| ||| | |
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| T |
26496605 |
catgccttcagtcttaagtgtatgtgctacatata---gagttttctaagatgaactaattaaacatcattactcatctcataattttgtgttctattta |
26496701 |
T |
|
| Q |
214 |
atagttttgtgtgtgcgtacttgttgcagataagtgtaggattggatcagggccacaaaatgagtggtatttcttcagtcacaaggacaagaaataccca |
313 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26496702 |
atagttttgtgtgtgcgtacttgttgcagataagtgtaggattggatcagggccacaaaatgagtggtatttcttcagtcacaaggacaagaaataccca |
26496801 |
T |
|
| Q |
314 |
acaggaacaagaacaaatagagcaactacagctgggttttggaaagcaacaggaagagacaaagccatatatcacaccaattccaaaaggattggaatga |
413 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26496802 |
acaggaacaagaacaaatagagcaactacagctgggttttggaaagcaacaggaagagacaaagccatatatcacaccaattccaaaaggattggaatga |
26496901 |
T |
|
| Q |
414 |
ggaaaaccttagtcttctacactggacgtg |
443 |
Q |
| |
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||||||||||||| |||||||||||||||| |
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| T |
26496902 |
ggaaaaccttagtgttctacactggacgtg |
26496931 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 62; Significance: 1e-26; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 266 - 375
Target Start/End: Original strand, 12276535 - 12276644
Alignment:
| Q |
266 |
ccacaaaatgagtggtatttcttcagtcacaaggacaagaaatacccaacaggaacaagaacaaatagagcaactacagctgggttttggaaagcaacag |
365 |
Q |
| |
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|||||||| |||||||||||||||||||||||||||| || ||||||||||| |||| || ||||||||||| | || ||||||||||||||||||| |
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| T |
12276535 |
ccacaaaacgagtggtatttcttcagtcacaaggacagaaagtacccaacagggtcaaggactaatagagcaacaaatgcagggttttggaaagcaacag |
12276634 |
T |
|
| Q |
366 |
gaagagacaa |
375 |
Q |
| |
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|||||||||| |
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| T |
12276635 |
gaagagacaa |
12276644 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 268 - 376
Target Start/End: Original strand, 12851209 - 12851317
Alignment:
| Q |
268 |
acaaaatgagtggtatttcttcagtcacaaggacaagaaatacccaacaggaacaagaacaaatagagcaactacagctgggttttggaaagcaacagga |
367 |
Q |
| |
|
|||||||||||||||||| || || || || || ||||| || ||||| || ||||||||||||||||||||| ||||||| |||||||||||||||||| |
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| T |
12851209 |
acaaaatgagtggtatttttttagccataaagataagaagtatccaactggtacaagaacaaatagagcaactgcagctggattttggaaagcaacagga |
12851308 |
T |
|
| Q |
368 |
agagacaaa |
376 |
Q |
| |
|
||||||||| |
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|
| T |
12851309 |
agagacaaa |
12851317 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 268 - 372
Target Start/End: Complemental strand, 42048721 - 42048617
Alignment:
| Q |
268 |
acaaaatgagtggtatttcttcagtcacaaggacaagaaatacccaacaggaacaagaacaaatagagcaactacagctgggttttggaaagcaacagga |
367 |
Q |
| |
|
||||||||| ||||||||||| ||||| || || ||||| || ||||||||||| |||| ||||||||||| | ||| || || |||||||| |||||| |
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| T |
42048721 |
acaaaatgactggtatttctttagtcataaagataagaagtatccaacaggaactcgaacgaatagagcaacaaaagcaggattctggaaagccacagga |
42048622 |
T |
|
| Q |
368 |
agaga |
372 |
Q |
| |
|
||||| |
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|
| T |
42048621 |
agaga |
42048617 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 273 - 372
Target Start/End: Complemental strand, 32225732 - 32225633
Alignment:
| Q |
273 |
atgagtggtatttcttcagtcacaaggacaagaaatacccaacaggaacaagaacaaatagagcaactacagctgggttttggaaagcaacaggaagaga |
372 |
Q |
| |
|
||||||||||||| || |||||||| || |||||||| |||||||| || ||||| |||||||| || | || ||||| ||||||||||| |||||||| |
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|
| T |
32225732 |
atgagtggtatttttttagtcacaaagataagaaatatccaacagggacgagaacgaatagagctacaatggcagggttctggaaagcaaccggaagaga |
32225633 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 272 - 378
Target Start/End: Original strand, 8450068 - 8450174
Alignment:
| Q |
272 |
aatgagtggtatttcttcagtcacaaggacaagaaatacccaacaggaacaagaacaaatagagcaactacagctgggttttggaaagcaacaggaagag |
371 |
Q |
| |
|
|||||||||||||| ||||| || || || || || || |||||||| |||||||| || ||||| || | ||||||||||||||||| |||||||||| |
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| T |
8450068 |
aatgagtggtattttttcagccataaagataaaaagtatccaacagggacaagaaccaacagagctaccatggctgggttttggaaagctacaggaagag |
8450167 |
T |
|
| Q |
372 |
acaaagc |
378 |
Q |
| |
|
| ||||| |
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|
| T |
8450168 |
ataaagc |
8450174 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 272 - 378
Target Start/End: Original strand, 43438658 - 43438764
Alignment:
| Q |
272 |
aatgagtggtatttcttcagtcacaaggacaagaaatacccaacaggaacaagaacaaatagagcaactacagctgggttttggaaagcaacaggaagag |
371 |
Q |
| |
|
||||||||||| || ||||| ||||| || ||||| || || |||||||||||||| |||||||| ||| | ||||| || |||||||| || ||||||| |
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| T |
43438658 |
aatgagtggtactttttcagccacaaagataagaagtatcctacaggaacaagaactaatagagccactgctgctggattctggaaagctactggaagag |
43438757 |
T |
|
| Q |
372 |
acaaagc |
378 |
Q |
| |
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| ||||| |
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|
| T |
43438758 |
ataaagc |
43438764 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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