View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11721_low_39 (Length: 412)
Name: NF11721_low_39
Description: NF11721
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11721_low_39 |
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Alignment Details
Target: chr5 (Bit Score: 253; Significance: 1e-140; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 253; E-Value: 1e-140
Query Start/End: Original strand, 19 - 402
Target Start/End: Complemental strand, 34746580 - 34746183
Alignment:
| Q |
19 |
gatgtccaaataaatatttctccaaattatatggtgttaagccaaccaatgacatgttcaatccatgtgattttggaaacttctatacatagtatagtaa |
118 |
Q |
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| T |
34746580 |
gatgtccaaataaatatttctccaaattttatggtgttaagccaaccaatgacatgttcaatccatgtgattttggaaacttctatacatagtatagtaa |
34746481 |
T |
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| Q |
119 |
ccagaaagaagttgaccgttagtacaatggaac-nnnnnnnnnnnnnnnnngatagaatttttgccacactaacatgatatgagcttcaacttgaagt-- |
215 |
Q |
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| T |
34746480 |
ccagaaagaagttgaccgttagtacaatggaacaaaaaaaaagtcaaaaaagatggaatttttgccacactaacatgagatgagcttcaacttgaagtca |
34746381 |
T |
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| Q |
216 |
-----------catgaacatgaagtacatgcgtgcaaacacagcactatatattatgattttgtannnnnnnnnnctctctctaattggttctctgcaat |
304 |
Q |
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| T |
34746380 |
tgaacataaaacatgaacatgaagtacatgcgtgcaaacacagcactatatattatgattttgtattgtttttttctctctctaattggttctctgcaat |
34746281 |
T |
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| Q |
305 |
ctacccttaacttaatattctcctcatcagcagattccctaaaacaccatctttctgccactttctcttcattgctttccaagccaagaatctctctg |
402 |
Q |
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| T |
34746280 |
ctacccttaacttaatattctcctcatcagcagattccctaaaacaccatctttctgccactttctcttcattgctttccaagccaagaatctctctg |
34746183 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 364 - 400
Target Start/End: Original strand, 31052682 - 31052718
Alignment:
| Q |
364 |
actttctcttcattgctttccaagccaagaatctctc |
400 |
Q |
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| T |
31052682 |
actttcttttcattgctttccaagccaagaatctctc |
31052718 |
T |
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