View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11721_low_4 (Length: 825)

Name: NF11721_low_4
Description: NF11721
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11721_low_4
NF11721_low_4
[»] chr8 (19 HSPs)
chr8 (21-543)||(479689-480208)
chr8 (605-815)||(479417-479627)
chr8 (37-161)||(467687-467811)
chr8 (239-376)||(467492-467629)
chr8 (37-169)||(474712-474845)
chr8 (245-354)||(446508-446617)
chr8 (45-161)||(446677-446793)
chr8 (620-794)||(466498-466672)
chr8 (259-376)||(474520-474637)
chr8 (619-815)||(473943-474139)
chr8 (72-159)||(455405-455492)
chr8 (446-538)||(466743-466835)
chr8 (242-376)||(455212-455346)
chr8 (629-725)||(445767-445863)
chr8 (737-801)||(454786-454850)
chr8 (620-686)||(454890-454956)
chr8 (453-533)||(455041-455121)
chr8 (490-534)||(474232-474276)
chr8 (439-538)||(446009-446108)
[»] chr2 (4 HSPs)
chr2 (617-794)||(27493754-27493931)
chr2 (238-373)||(27491737-27491872)
chr2 (37-155)||(27491529-27491647)
chr2 (448-533)||(27493536-27493624)


Alignment Details
Target: chr8 (Bit Score: 501; Significance: 0; HSPs: 19)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 501; E-Value: 0
Query Start/End: Original strand, 21 - 543
Target Start/End: Complemental strand, 480208 - 479689
Alignment:
Q  21 atgttctctgcatttattagtagctttggacccttcaacaatgcaatagatactgctccacttatacatatcactgtccccactattttggctatagttc 120  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  480208 atgttctctgcatttattagtagctttggacccttcaacaatgcaatagatactgctccacttatacatatcactgtccccactattttggctatagttc 480109  T
Q  121 tcatacttcgaatatttactttctccattctgtaatataatagtattcaacttccaataattaaaaacacattcgtttaaattttgattgaataacaaat 220  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  480108 tcatacttcgaatatttactttctccattctgtaatataatagtattcaacttccaataattaaaaacacattcgtttaaattttgattgaataacaaat 480009  T
Q  221 taattaatatgttcactttagtaattaccctacaaaggctgctattacaaatgtgactgctggaacaaggttggacatggcacttgcaactgaagcagaa 320  Q
    |||   |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  480008 taa---atattttcactttagtaattaccctacaaaggctgctattacaaatgtgactgctggaacaaggttggacatggcacttgcaactgaagcagaa 479912  T
Q  321 gctagaaatataccctcaaaaaataaattttgattcaatgtaatgctgcaacatatatagagccatgataacacaaatcaatctcacgtacatgagtgta 420  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  479911 gctagaaatataccctcaaaaaataaattttgattcaatgtaatgctgcaacatatatagagccatgataacacaaatcaatctcaggtacatgagtgta 479812  T
Q  421 aatatgcgtttatattattattactagagaatggaaactaacccaattagtgaggttaagaataacaaagaaaaactccttaaatttaaggaataagagc 520  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  479811 aatatgcgtttatattattattactagagaatggaaactaacccaattagtgaggttaagaataacaaagaaaaactccttaaatttaaggaataagagc 479712  T
Q  521 cagaatttctcctatcaagaaac 543  Q
    |||||||||||||||||||||||    
T  479711 cagaatttctcctatcaagaaac 479689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 203; E-Value: 1e-110
Query Start/End: Original strand, 605 - 815
Target Start/End: Complemental strand, 479627 - 479417
Alignment:
Q  605 gcaatgaaagagaagtacccggaaaaataagcaacaggagcaagaagaatggttgcaatagcatgacggtacactacaaatatcctagggctcaaaccct 704  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  479627 gcaatgaaatagaagtacccggaaaaataagcaacaggagcaagaagaatggttgcaatagcatgacggtacactacaaatatcctagggctcaaaccct 479528  T
Q  705 gcaaaaatacaattcttgtgccaatacccaaacctgcatatataaactctatcaacaccatagccattattggaaggtagtactccatgtctaaacatcc 804  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  479527 gcaaaaatacaattcttgtgccaatacccaaacctgcatatataaactctatcaacaccatagccattattggaaggtagtactccatgtctaaacatcc 479428  T
Q  805 catctctgctt 815  Q
    ||||| |||||    
T  479427 catctttgctt 479417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 89; E-Value: 2e-42
Query Start/End: Original strand, 37 - 161
Target Start/End: Complemental strand, 467811 - 467687
Alignment:
Q  37 ttagtagctttggacccttcaacaatgcaatagatactgctccacttatacatatcactgtccccactattttggctatagttctcatacttcgaatatt 136  Q
    ||||||| ||||||||||||||||||||||| || ||||||||||||| |||||| | ||||||||||||||||||||||||||| ||||||||||||||    
T  467811 ttagtagttttggacccttcaacaatgcaattgacactgctccacttacacatataattgtccccactattttggctatagttcttatacttcgaatatt 467712  T
Q  137 tactttctccattctgtaatataat 161  Q
     ||||| ||||||||||||||||||    
T  467711 cactttttccattctgtaatataat 467687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 86; E-Value: 1e-40
Query Start/End: Original strand, 239 - 376
Target Start/End: Complemental strand, 467629 - 467492
Alignment:
Q  239 tagtaattaccctacaaaggctgctattacaaatgtgactgctggaacaaggttggacatggcacttgcaactgaagcagaagctagaaatataccctca 338  Q
    ||||||||||||||| |||||||| ||||||||||||||||| |||| ||| ||||| ||||||||||||||||||| |||||  ||| ||| |||||||    
T  467629 tagtaattaccctactaaggctgcaattacaaatgtgactgccggaagaagattggaaatggcacttgcaactgaagaagaagaaagatatagaccctca 467530  T
Q  339 aaaaataaattttgattcaatgtaatgctgcaacatat 376  Q
    ||| ||||||||||||||||||||||||||||| ||||    
T  467529 aaatataaattttgattcaatgtaatgctgcaatatat 467492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 78; E-Value: 7e-36
Query Start/End: Original strand, 37 - 169
Target Start/End: Complemental strand, 474845 - 474712
Alignment:
Q  37 ttagtagctttggacccttcaacaatgcaatagatactgctccacttatacatatcactgtccccactattttggctatagttctcatacttcgaatatt 136  Q
    |||||||||||||||||||||||||||| ||||| | ||||||||  | |||||| | |||||| |||||||||||||||||||||| ||||||||| ||    
T  474845 ttagtagctttggacccttcaacaatgctatagacaatgctccacaaacacatattaatgtccctactattttggctatagttctcaaacttcgaatgtt 474746  T
Q  137 tactttctccattctgtaatata-atagtattca 169  Q
     |||||||||||||||||||||| ||||||||||    
T  474745 gactttctccattctgtaatatatatagtattca 474712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 66; E-Value: 1e-28
Query Start/End: Original strand, 245 - 354
Target Start/End: Complemental strand, 446617 - 446508
Alignment:
Q  245 ttaccctacaaaggctgctattacaaatgtgactgctggaacaaggttggacatggcacttgcaactgaagcagaagctagaaatataccctcaaaaaat 344  Q
    ||||||| |||||||||||||||||||||||| |||||||| ||| |||  |||||||||||||| ||||||||||| |||| ||| |||||||||| ||    
T  446617 ttaccctgcaaaggctgctattacaaatgtgattgctggaataagattgttcatggcacttgcaattgaagcagaagatagatatagaccctcaaaatat 446518  T
Q  345 aaattttgat 354  Q
    ||||||||||    
T  446517 aaattttgat 446508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 65; E-Value: 4e-28
Query Start/End: Original strand, 45 - 161
Target Start/End: Complemental strand, 446793 - 446677
Alignment:
Q  45 tttggacccttcaacaatgcaatagatactgctccacttatacatatcactgtccccactattttggctatagttctcatacttcgaatatttactttct 144  Q
    ||||||||||| |||||||| || || | ||||||||  | |||||| | ||| |||||||||||||||||||||||||||||||||||||| | |||||    
T  446793 tttggaccctttaacaatgcgatggacattgctccacaaacacatattattgttcccactattttggctatagttctcatacttcgaatattgaatttct 446694  T
Q  145 ccattctgtaatataat 161  Q
    |||||||||||||||||    
T  446693 ccattctgtaatataat 446677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 620 - 794
Target Start/End: Complemental strand, 466672 - 466498
Alignment:
Q  620 tacccggaaaaataagcaacaggagcaagaagaatggttgcaatagcatgacggtacactacaaatatcctagggctcaaaccctgcaaaaatacaattc 719  Q
    ||||| || |||||||| |  |||||||||| ||||||||||| ||||  |||||| |||||||||||||| || |||| ||||| ||||| | | ||||    
T  466672 taccctgataaataagcgaggggagcaagaacaatggttgcaaaagcactacggtatactacaaatatccttggactcataccctccaaaagtgccattc 466573  T
Q  720 ttgtgccaatacccaaacctgcatatataaactctatcaacaccatagccattattggaaggtagtactccatgt 794  Q
    ||||||||| |  |  ||||||| |||| |||| |||||||| |||| | |||||||| ||||||||||||||||    
T  466572 ttgtgccaagagtctgacctgcaaatattaactgtatcaacaacataactattattggcaggtagtactccatgt 466498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 58; E-Value: 6e-24
Query Start/End: Original strand, 259 - 376
Target Start/End: Complemental strand, 474637 - 474520
Alignment:
Q  259 ctgctattacaaatgtgactgctggaacaaggttggacatggcacttgcaactgaagcagaagctagaaatataccctcaaaaaataaattttgattcaa 358  Q
    ||||||| |||||||||||||| |||| ||| |||| |||||||||||||| ||||| ||||| |||| ||| |||||||||| ||| ||||||| ||||    
T  474637 ctgctataacaaatgtgactgcaggaataagattggtcatggcacttgcaattgaagaagaagatagatatagaccctcaaaatatagattttgagtcaa 474538  T
Q  359 tgtaatgctgcaacatat 376  Q
    ||||| |||||| |||||    
T  474537 tgtaacgctgcatcatat 474520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 619 - 815
Target Start/End: Complemental strand, 474139 - 473943
Alignment:
Q  619 gtacccggaaaaataagcaacaggagcaagaagaatggttgcaatagcatgacggtacactacaaatatcctagggctcaaaccctgcaaaaatacaatt 718  Q
    |||||| || ||||||||||  |||||||||| ||||||||||| ||||  |||||| ||||||||||   | || |||| ||||| |||||     | |    
T  474139 gtacccagagaaataagcaatgggagcaagaaaaatggttgcaaaagcactacggtatactacaaatacgttgggactcataccctccaaaagggtgact 474040  T
Q  719 cttgtgccaatacccaaacctgcatatataaactctatcaacaccatagccattattggaaggtagtactccatgtctaaacatcccatctctgctt 815  Q
    ||| |||||| |  || ||||||||||||||||| |||||| |||||| |||||||||| |  || ||||||||||||||||||||||||| |||||    
T  474039 cttatgccaagattcatacctgcatatataaactgtatcaataccataaccattattggcatataatactccatgtctaaacatcccatctttgctt 473943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 56; E-Value: 9e-23
Query Start/End: Original strand, 72 - 159
Target Start/End: Complemental strand, 455492 - 455405
Alignment:
Q  72 actgctccacttatacatatcactgtccccactattttggctatagttctcatacttcgaatatttactttctccattctgtaatata 159  Q
    ||||||||| | | |||||||| |||||| |||||||||||||||||||||| |||| ||||||| ||||||||||||||||||||||    
T  455492 actgctccagtaacacatatcattgtcccaactattttggctatagttctcaaactttgaatattcactttctccattctgtaatata 455405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 53; E-Value: 6e-21
Query Start/End: Original strand, 446 - 538
Target Start/End: Complemental strand, 466835 - 466743
Alignment:
Q  446 agagaatggaaactaacccaattagtgaggttaagaataacaaagaaaaactccttaaatttaaggaataagagccagaatttctcctatcaa 538  Q
    ||||||||||||| ||||||||||||||||| | ||| | ||| ||||||||||||||||| |||||||| |||||||| |||||||| ||||    
T  466835 agagaatggaaacaaacccaattagtgaggtcatgaaaatcaaggaaaaactccttaaattcaaggaatatgagccagagtttctcctgtcaa 466743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 51; E-Value: 9e-20
Query Start/End: Original strand, 242 - 376
Target Start/End: Complemental strand, 455346 - 455212
Alignment:
Q  242 taattaccctacaaaggctgctattacaaatgtgactgctggaacaaggttggacatggcacttgcaactgaagcagaagctagaaatataccctcaaaa 341  Q
    ||||||||| ||||||| |||||| ||||||||||||||||||  ||| |||  ||||||| |||||  ||||| ||| | |||| ||| ||||||||||    
T  455346 taattacccaacaaaggttgctataacaaatgtgactgctggagtaagattgatcatggcagttgcagttgaagaagatgatagatatagaccctcaaaa 455247  T
Q  342 aataaattttgattcaatgtaatgctgcaacatat 376  Q
     ||||||||||||  || |||||||||||| ||||    
T  455246 tataaattttgatataaagtaatgctgcaaaatat 455212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 629 - 725
Target Start/End: Complemental strand, 445863 - 445767
Alignment:
Q  629 aaataagcaacaggagcaagaagaatggttgcaatagcatgacggtacactacaaatatcctagggctcaaaccctgcaaaaatacaattcttgtgc 725  Q
    ||||||||||  |||||||||| ||||||||||| ||||| |||||||| |||||||| |   ||||||| ||||| ||||| | ||||||||||||    
T  445863 aaataagcaattggagcaagaaaaatggttgcaaaagcattacggtacattacaaataccgccgggctcataccctccaaaagtgcaattcttgtgc 445767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 737 - 801
Target Start/End: Complemental strand, 454850 - 454786
Alignment:
Q  737 cctgcatatataaactctatcaacaccatagccattattggaaggtagtactccatgtctaaaca 801  Q
    |||| ||||||||||| | |||||||||| |||| || |||||||||||||||||||||||||||    
T  454850 cctgaatatataaactgtgtcaacaccatggccaatactggaaggtagtactccatgtctaaaca 454786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 620 - 686
Target Start/End: Complemental strand, 454956 - 454890
Alignment:
Q  620 tacccggaaaaataagcaacaggagcaagaagaatggttgcaatagcatgacggtacactacaaata 686  Q
    ||||| || ||||||||||  |||||||||||||||||||||| |||||||||||| |||| |||||    
T  454956 tacccagataaataagcaatgggagcaagaagaatggttgcaaaagcatgacggtaaactataaata 454890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 453 - 533
Target Start/End: Complemental strand, 455121 - 455041
Alignment:
Q  453 ggaaactaacccaattagtgaggttaagaataacaaagaaaaactccttaaatttaaggaataagagccagaatttctcct 533  Q
    |||||| ||||||||||||||||| | ||| | | | ||||||||  ||||||||||||||||||||| ||| ||||||||    
T  455121 ggaaacaaacccaattagtgaggtcatgaaaatccaggaaaaacttgttaaatttaaggaataagagcgagagtttctcct 455041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 490 - 534
Target Start/End: Complemental strand, 474276 - 474232
Alignment:
Q  490 gaaaaactccttaaatttaaggaataagagccagaatttctccta 534  Q
    |||||||||||||||||||||||||||||| |||| |||||||||    
T  474276 gaaaaactccttaaatttaaggaataagaggcagagtttctccta 474232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 439 - 538
Target Start/End: Complemental strand, 446108 - 446009
Alignment:
Q  439 tattactagagaatggaaactaacccaattagtgaggttaagaataacaaagaaaaactccttaaatttaaggaataagagccagaatttctcctatcaa 538  Q
    |||||||||| |||| |||| |||| ||||||||| || | ||||| | | |||||||||||||| |||||||| || ||| |||| |||||||| ||||    
T  446108 tattactagaaaatgaaaacaaacctaattagtgaagtcatgaatatccaggaaaaactccttaagtttaaggagtaggaggcagagtttctcctgtcaa 446009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 70; Significance: 4e-31; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 70; E-Value: 4e-31
Query Start/End: Original strand, 617 - 794
Target Start/End: Original strand, 27493754 - 27493931
Alignment:
Q  617 aagtacccggaaaaataagcaacaggagcaagaagaatggttgcaatagcatgacggtacactacaaatatcctagggctcaaaccctgcaaaaatacaa 716  Q
    |||||||| || |||||||||||||||||||||| ||||||||||| |||||  || || |||||||||| | | || |||||||||| ||||| |||||    
T  27493754 aagtaccctgataaataagcaacaggagcaagaaaaatggttgcaaaagcatagcgatatactacaaataccattggactcaaaccctccaaaagtacaa 27493853  T
Q  717 ttcttgtgccaatacccaaacctgcatatataaactctatcaacaccatagccattattggaaggtagtactccatgt 794  Q
    ||||||| |||| |  ||| |||| |||||| |||| |||||| | |||| |||||||||| | ||||||||||||||    
T  27493854 ttcttgtaccaagagtcaagcctgaatatattaactgtatcaataacataaccattattggtaagtagtactccatgt 27493931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 238 - 373
Target Start/End: Original strand, 27491737 - 27491872
Alignment:
Q  238 ttagtaattaccctacaaaggctgctattacaaatgtgactgctggaacaaggttggacatggcacttgcaactgaagcagaagctagaaatataccctc 337  Q
    |||||| ||||||||| || ||||||||||||||||| ||||||||||| || ||| |||| ||||||| |||||||| |||  ||||| ||| ||||      
T  27491737 ttagtagttaccctacgaaagctgctattacaaatgtcactgctggaactagattgcacattgcacttgtaactgaagaagagactagatataaacccca 27491836  T
Q  338 aaaaaataaattttgattcaatgtaatgctgcaaca 373  Q
    | | | ||||||||||| ||| ||||||||||||||    
T  27491837 agatagtaaattttgatccaaggtaatgctgcaaca 27491872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 51; E-Value: 9e-20
Query Start/End: Original strand, 37 - 155
Target Start/End: Original strand, 27491529 - 27491647
Alignment:
Q  37 ttagtagctttggacccttcaacaatgcaatagatactgctccacttatacatatcactgtccccactattttggctatagttctcatacttcgaatatt 136  Q
    |||| ||||||||||||||||| | ||||||  | ||||||||||||| || ||| | ||| || | |||||||||||||||||||| ||||| ||||||    
T  27491529 ttagcagctttggacccttcaatagtgcaatgaacactgctccacttacacctataattgttcctattattttggctatagttctcaaacttctaatatt 27491628  T
Q  137 tactttctccattctgtaa 155  Q
     |||| |||||||||||||    
T  27491629 cacttgctccattctgtaa 27491647  T

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Target: chr2; HSP #4
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 448 - 533
Target Start/End: Original strand, 27493536 - 27493624
Alignment:
Q  448 agaatggaaactaacccaattagtgaggttaagaataacaaagaaaaactccttaaatttaaggaat---aagagccagaatttctcct 533  Q
    ||||| ||||| ||||||| |||||| || | ||||| | ||||||||||| |||||||||||||||   | |||||||||||||||||    
T  27493536 agaatagaaacaaacccaactagtgaagtgatgaatatccaagaaaaactctttaaatttaaggaatgggaggagccagaatttctcct 27493624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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