View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11721_low_40 (Length: 406)
Name: NF11721_low_40
Description: NF11721
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11721_low_40 |
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Alignment Details
Target: chr4 (Bit Score: 311; Significance: 1e-175; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 311; E-Value: 1e-175
Query Start/End: Original strand, 1 - 387
Target Start/End: Complemental strand, 37820091 - 37819704
Alignment:
| Q |
1 |
ggttatagtatatgttgctgaaaccaaagccaaagatttaacatagaggatttgttgcaaggatcccctgaaaattttgaaaatttgtttgtattcacac |
100 |
Q |
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| T |
37820091 |
ggttatagtatatgttgctgaaaccaaagccaaagatttaacatagaggatttgttgcaaggatcccctgaaaattttgaaaatttgtttgtattcacac |
37819992 |
T |
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| Q |
101 |
ataatcctcacttaaattactgtataaaattaggtacttgtgtaatagaaattttacccaaataatccacaaagaaaagcttggaatagcaccgttccag |
200 |
Q |
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| T |
37819991 |
ataatcctcacttaaattactgtataaaataaggtacctgtgtaatagaaattttacccaaataatccacaaagaaaagcttggaatagcaccgttccag |
37819892 |
T |
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| Q |
201 |
tcaggtttcgcaaactttttctggtgaaacatgacgataaaaattgcagatatatacata-nnnnnnncacaattgtacgaaaatagtaaagtaaattaa |
299 |
Q |
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| T |
37819891 |
tcaggtttcgcaaactttttctggtgaaacatgacgataaaaattgcagatatatacatattttttttcacaattgtacgaaaatagtaaagtaaattaa |
37819792 |
T |
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| Q |
300 |
ttttttcaagttcaatgtgacgacattttgtgtgaaatgaaactgttcccgactcgttcccatgaacttaactcagtcggaagggaca |
387 |
Q |
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| T |
37819791 |
ttttttctacttcaatgtgacgatattttgtgtaaaacggaactgttcccgactctttcccatgaacttaattcagttggcagggaca |
37819704 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 23 - 73
Target Start/End: Complemental strand, 37823629 - 37823579
Alignment:
| Q |
23 |
accaaagccaaagatttaacatagaggatttgttgcaaggatcccctgaaa |
73 |
Q |
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| T |
37823629 |
accaaggccaaagatttaacatataggttttgttgcaaggatcccctgaaa |
37823579 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 140 - 188
Target Start/End: Complemental strand, 37823516 - 37823469
Alignment:
| Q |
140 |
gtgtaatagaaattttacccaaataatccacaaagaaaagcttggaata |
188 |
Q |
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| T |
37823516 |
gtgtattagaaattt-acccaaataacccacaaagaaaagcttggaata |
37823469 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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