View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11721_low_41 (Length: 402)
Name: NF11721_low_41
Description: NF11721
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11721_low_41 |
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Alignment Details
Target: chr4 (Bit Score: 333; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 333; E-Value: 0
Query Start/End: Original strand, 19 - 395
Target Start/End: Complemental strand, 55346595 - 55346219
Alignment:
| Q |
19 |
aaacaatatatgttttgatacgccaaaaacagcttctccaccaaatttataatttgtttcatcttgcaaggtcaactttttattaagcgtcacttcgggg |
118 |
Q |
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| T |
55346595 |
aaacaatatatgttttgatacgccaaaaacagcttctccaccaaatttataatttgtttcatcttgcaaggtcaactttttattaagcgtcacttcgggg |
55346496 |
T |
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| Q |
119 |
aatgaaaggataagattttctctaatgcttgtttatttgatgagtggaaactaatataattaagtggaatccacgacaaattaaaatctccttattaact |
218 |
Q |
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|||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
55346495 |
aatgaaaggataagattttctcaaatgattgtttatttgatgagtggaaactaatataattaagtggaatccacgacaaattaaaatctccttattaact |
55346396 |
T |
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| Q |
219 |
ttgttcaaaaaagaaatctccatattaagttaggaaaagcatatgattattgnnnnnnnngttaggaaaagcatataagatcttatcattgttctaccag |
318 |
Q |
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||||| ||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
55346395 |
ttgttaaaaaaagaaatctccttattaagttaggaaaagcatatgattattgaaaaaaaagttaggaaaagcatataagatcttatcattgttctaccag |
55346296 |
T |
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| Q |
319 |
tgcatgttaaaatggaaaaagatatacaatagtggcgattgtttgaatatccctgcttttcttttgctcctatgcta |
395 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
55346295 |
tgcatgttaaaatggaaaaagatatacaatagtggcgattgtttgaatatccctgcttttcttttgctcttatgcta |
55346219 |
T |
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