View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11721_low_42 (Length: 394)
Name: NF11721_low_42
Description: NF11721
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11721_low_42 |
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Alignment Details
Target: chr2 (Bit Score: 284; Significance: 1e-159; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 284; E-Value: 1e-159
Query Start/End: Original strand, 17 - 383
Target Start/End: Complemental strand, 2484505 - 2484153
Alignment:
| Q |
17 |
caatcaatcagaagaagaaaccaagagggagagatacaatcattcaaaagtatgaagaagagaccaacagagagggacaatcaatcagaaaaactaatga |
116 |
Q |
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|||||||||||||||||||| ||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
2484505 |
caatcaatcagaagaagaaatcaagagggagagatacaatcaatcaaaagaatgaagaagagaccaacagagagggacaatcaatgagaaaaactaatga |
2484406 |
T |
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| Q |
117 |
aggagaaactagttaaacaaagaaacaaatcaaaagagagaacgaatcaaatagagggaagtgaagtgcaatcataaaggggagatatgcagtcaaacag |
216 |
Q |
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|||||||| | ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
2484405 |
gggagaaaccaattaaacaaacaaacaaatcaaaagagagaacgaatcaaatagagggaagtgaagtgcaatcataaaggggagatgtgcagtcaaacag |
2484306 |
T |
|
| Q |
217 |
aaaggaagaaaccaaagagagaaagacaatcaaagtgagaagtcaacataccaaaccaaatgaaccaaaccgaattcaaagtacaaccagaataaccaac |
316 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
2484305 |
aaaggaagaaaccaaagagagaaagacaatcaaagtgagaagtcaacatacca--------------aaccgaattcaaagtacaaccagaataaccaac |
2484220 |
T |
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| Q |
317 |
cttaatcaaaccaccatttaccaaatcttccttgacagccccatcaataatatcaatatcaattcat |
383 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2484219 |
cttaatcaaaccaccatttaccaaatcttccttgacagccccatcaataatatcaatatcaattcat |
2484153 |
T |
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