View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11721_low_43 (Length: 390)
Name: NF11721_low_43
Description: NF11721
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11721_low_43 |
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Alignment Details
Target: chr4 (Bit Score: 314; Significance: 1e-177; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 314; E-Value: 1e-177
Query Start/End: Original strand, 18 - 376
Target Start/End: Original strand, 55336809 - 55337167
Alignment:
| Q |
18 |
gtaatcatgttaatgttgtttagaagtaggttgttccaattttgacgctgttcgcagatgtttttgtgcatttcaattctgtcagatacagaatctaaga |
117 |
Q |
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| T |
55336809 |
gtaatcatgttaatgttgtttagaagtaggttgttccaattttgacgctgttcgccgatgtttttgtgcatttcaattctgtcagatacagaatctaaga |
55336908 |
T |
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| Q |
118 |
tagcatagagttgcacggtgttggagttattgattgtagaattggataaatcatggtgtaaattatgtgtcctattgatgacannnnnnncaagcaataa |
217 |
Q |
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| T |
55336909 |
tagcatagagttgcacggtgttggagttattgattgaagaattggataaatcatggtgtaaattatgtgtcctattgatgacatttttttcaagcaataa |
55337008 |
T |
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| Q |
218 |
tgaaggaactgagtctttgaaggttaaccctccaaccagctttgcagtgggtatcttattcttaggaagtaaagaattgggtcttgggaaatggattgag |
317 |
Q |
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| T |
55337009 |
tgaaggaactgagtctttgaaggttaacccttcaaccagctttgcagtgggtatcctattcttaggaagtaaagaattgggtcttgggaaatggattgag |
55337108 |
T |
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| Q |
318 |
gcattcacatttcctctttatgaagacaagaaagaaaaagaagaagttgaggtgtgcat |
376 |
Q |
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| T |
55337109 |
gcattcacattacctctttttgaagacaagaaagaaaaagaagaagttgaggtgtgcat |
55337167 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 21 - 132
Target Start/End: Original strand, 55331374 - 55331485
Alignment:
| Q |
21 |
atcatgttaatgttgtttagaagtaggttgttccaattttgacgctgttcgcagatgtttttgtgcatttcaattctgtcagatacagaatctaagatag |
120 |
Q |
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| T |
55331374 |
atcatgttgatgttgtttagaagtaggttgttccaattctgtcgctgttggctgaggttgttgtgcatttcgattctgtcggatacagaatctaaaattg |
55331473 |
T |
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| Q |
121 |
catagagttgca |
132 |
Q |
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| T |
55331474 |
catagagttgca |
55331485 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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